Wall clock time and date at job start Mon Mar 30 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 119.99887 * 2 1 4 4 C 1.53000 * 109.47518 * 270.00062 * 3 2 1 5 5 H 1.09000 * 115.54697 * 330.72548 * 4 3 2 6 6 C 1.53003 * 117.49859 * 116.38976 * 4 3 2 7 7 C 1.52997 * 117.50022 * 185.01313 * 4 3 2 8 8 C 1.53001 * 117.50236 * 0.02562 * 7 4 3 9 9 C 1.53007 * 117.49759 * 145.01978 * 7 4 3 10 10 C 1.34772 * 119.99891 * 180.02562 * 2 1 3 11 11 O 1.21283 * 119.99912 * 179.97438 * 10 2 1 12 12 C 1.50700 * 119.99971 * 0.02562 * 10 2 1 13 13 H 1.09001 * 109.46817 * 319.98961 * 12 10 2 14 14 N 1.46910 * 109.46728 * 199.99907 * 12 10 2 15 15 C 1.52992 * 109.47798 * 79.99728 * 12 10 2 16 16 C 1.52997 * 109.47482 * 185.00026 * 15 12 10 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 H 1.08999 * 109.47148 * 269.99866 * 1 2 3 26 26 H 1.09009 * 109.47280 * 29.99507 * 1 2 3 27 27 H 1.09001 * 109.47444 * 149.99353 * 1 2 3 28 28 H 1.09006 * 109.47491 * 30.00371 * 3 2 1 29 29 H 1.08999 * 109.47041 * 150.00379 * 3 2 1 30 30 H 1.08996 * 117.49767 * 214.98027 * 6 4 3 31 31 H 1.09000 * 117.49865 * 359.97438 * 6 4 3 32 32 H 1.09002 * 109.46740 * 59.99391 * 8 7 4 33 33 H 1.09000 * 109.47415 * 180.02562 * 8 7 4 34 34 H 1.09003 * 109.46805 * 299.99938 * 8 7 4 35 35 H 1.09007 * 109.46637 * 60.00676 * 9 7 4 36 36 H 1.08998 * 109.47150 * 179.97438 * 9 7 4 37 37 H 1.08997 * 109.47338 * 300.00308 * 9 7 4 38 38 H 1.00894 * 110.99558 * 176.04306 * 14 12 10 39 39 H 1.00892 * 110.99957 * 299.99600 * 14 12 10 40 40 H 1.09002 * 109.47103 * 64.99779 * 15 12 10 41 41 H 1.08998 * 109.46862 * 305.00591 * 15 12 10 42 42 H 1.09002 * 109.47153 * 59.99783 * 16 15 12 43 43 H 1.09001 * 109.46832 * 299.99974 * 16 15 12 44 44 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.5429 0.9054 -2.1716 6 6 1.8017 3.0148 -1.9074 7 6 3.3102 2.9590 -1.6578 8 6 3.8478 3.6699 -0.4142 9 6 4.2299 2.9820 -2.8804 10 6 2.1388 -1.1672 -0.0005 11 8 3.3516 -1.1672 -0.0010 12 6 1.3853 -2.4723 -0.0017 13 1 0.5217 -2.3937 0.6588 14 7 2.2675 -3.5474 0.4716 15 6 0.9138 -2.7878 -1.4225 16 6 0.0439 -4.0463 -1.4036 17 6 -0.4211 -4.3567 -2.8031 18 1 -0.1253 -3.7203 -3.6240 19 6 -1.2232 -5.4538 -3.0356 20 7 -1.5829 -6.2290 -2.0360 21 14 -1.7989 -5.8390 -4.7704 22 1 -1.2595 -4.8217 -5.7083 23 1 -1.3112 -7.1846 -5.1664 24 1 -3.2830 -5.8171 -4.8157 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8901 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 1.4645 3.0680 -2.9425 31 1 1.1915 3.5580 -1.1857 32 1 4.4757 2.9834 0.1537 33 1 4.4366 4.5359 -0.7168 34 1 3.0135 3.9971 0.2063 35 1 3.6321 2.8835 -3.7866 36 1 4.7759 3.9250 -2.9066 37 1 4.9363 2.1542 -2.8193 38 1 1.7674 -4.4209 0.5414 39 1 3.0762 -3.6403 -0.1244 40 1 1.7792 -2.9540 -2.0640 41 1 0.3323 -1.9498 -1.8068 42 1 -0.8216 -3.8801 -0.7621 43 1 0.6255 -4.8842 -1.0193 44 1 -2.1476 -7.0006 -2.1996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595995078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:37 Heat of formation + Delta-G solvation = -31.283906 kcal Electronic energy + Delta-G solvation = -21044.545776 eV Core-core repulsion = 17996.892708 eV Total energy + Delta-G solvation = -3047.653068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.01010 -38.55238 -35.51723 -35.19631 -32.85372 -30.09778 -29.86491 -28.20361 -27.43393 -26.73416 -25.42844 -23.40460 -21.41660 -20.42033 -19.01022 -18.63975 -17.27138 -16.39517 -16.13351 -15.36511 -14.98853 -14.50481 -14.39449 -14.20382 -13.98924 -13.73273 -13.38977 -12.99636 -12.87860 -12.58182 -12.55750 -12.28197 -12.19288 -12.11473 -11.97109 -11.67562 -11.56529 -11.25171 -11.04686 -10.92880 -10.66604 -9.97799 -9.95666 -9.91260 -9.70663 -9.25262 -9.13393 -8.52890 -8.44831 -8.15710 -6.09410 -4.12434 2.94810 3.09771 3.25438 3.33576 3.37455 3.62457 4.38554 4.50590 4.59909 4.66826 4.88328 4.91728 5.20224 5.21706 5.26519 5.28925 5.35019 5.46704 5.51529 5.58424 5.62044 5.67389 5.72674 5.74350 5.77283 5.80230 5.82261 5.84395 5.98171 6.10135 6.20500 6.30038 6.53151 6.67115 6.87354 7.41075 7.51379 7.60117 7.66742 7.87898 7.93203 8.30469 8.48304 8.93757 9.52602 11.01500 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021561 B = 0.004095 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.347922 B = 6835.650853 C = 7475.735279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.618 5.618 3 C 0.150 3.850 4 C -0.155 4.155 5 H 0.106 0.894 6 C -0.173 4.173 7 C -0.124 4.124 8 C -0.116 4.116 9 C -0.115 4.115 10 C 0.526 3.474 11 O -0.537 6.537 12 C 0.074 3.926 13 H 0.096 0.904 14 N -0.831 5.831 15 C -0.139 4.139 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.059 3.941 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.055 0.945 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.353 0.647 39 H 0.345 0.655 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 18.185 3.473 19.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.352 5.352 3 C 0.027 3.973 4 C -0.174 4.174 5 H 0.124 0.876 6 C -0.210 4.210 7 C -0.125 4.125 8 C -0.173 4.173 9 C -0.172 4.172 10 C 0.314 3.686 11 O -0.412 6.412 12 C -0.041 4.041 13 H 0.114 0.886 14 N -0.363 5.363 15 C -0.178 4.178 16 C -0.013 4.013 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.169 0.831 39 H 0.158 0.842 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.037 0.963 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.240 18.450 4.202 19.924 hybrid contribution -0.836 -0.719 -2.006 2.289 sum 5.404 17.730 2.196 18.665 Atomic orbital electron populations 1.21974 0.79252 1.04187 1.01853 1.47803 1.07084 1.05583 1.74732 1.20912 0.97574 0.84728 0.94112 1.22923 1.04093 0.91698 0.98714 0.87636 1.23334 0.94612 1.00786 1.02218 1.21561 0.92298 1.00879 0.97772 1.21348 1.00854 0.99615 0.95480 1.21352 0.98693 1.01861 0.95321 1.20921 0.87948 0.85305 0.74413 1.90622 1.14162 1.87327 1.49110 1.21501 0.95078 0.89279 0.98218 0.88606 1.58754 1.10930 1.09295 1.57312 1.22423 1.00636 1.01643 0.93137 1.19106 0.93995 0.90666 0.97501 1.21215 1.30663 1.10671 0.93559 0.92697 1.25010 0.96129 0.96150 0.97014 1.69959 1.36376 1.16130 1.30694 0.86539 0.78469 0.78285 0.84746 1.19771 1.20946 1.20929 0.92687 0.91186 0.89520 0.90804 0.89631 0.88969 0.88906 0.91967 0.92226 0.92495 0.92538 0.92257 0.92077 0.83131 0.84204 0.92739 0.92330 0.96323 0.96391 0.92936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 9.85 59.85 0.59 1.41 16 2 N -0.62 -8.64 2.87 -181.57 -0.52 -9.16 16 3 C 0.15 1.82 4.77 -4.04 -0.02 1.80 16 4 C -0.15 -1.84 5.73 -90.62 -0.52 -2.36 16 5 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 6 C -0.17 -1.67 9.47 -26.73 -0.25 -1.92 16 7 C -0.12 -1.25 2.70 -154.50 -0.42 -1.67 16 8 C -0.12 -1.00 8.86 37.16 0.33 -0.67 16 9 C -0.12 -1.10 9.85 37.16 0.37 -0.73 16 10 C 0.53 9.11 6.93 -10.99 -0.08 9.04 16 11 O -0.54 -10.81 15.83 5.55 0.09 -10.72 16 12 C 0.07 1.30 2.36 -68.86 -0.16 1.14 16 13 H 0.10 1.60 7.21 -51.93 -0.37 1.22 16 14 N -0.83 -14.76 8.94 -5.65 -0.05 -14.81 16 15 C -0.14 -2.75 4.45 -26.74 -0.12 -2.87 16 16 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 17 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.68 8.07 -51.92 -0.42 0.26 16 27 H 0.09 1.14 4.83 -51.93 -0.25 0.89 16 28 H 0.07 0.72 7.81 -51.93 -0.41 0.32 16 29 H 0.09 1.17 7.05 -51.93 -0.37 0.80 16 30 H 0.09 0.88 8.05 -51.93 -0.42 0.46 16 31 H 0.09 0.78 7.94 -51.93 -0.41 0.37 16 32 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 33 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 34 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 35 H 0.06 0.53 7.90 -51.93 -0.41 0.12 16 36 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.35 6.24 7.55 -39.29 -0.30 5.94 16 39 H 0.34 6.21 8.58 -39.30 -0.34 5.87 16 40 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.06 1.11 6.43 -51.93 -0.33 0.78 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 352.69 15.07 5.31 5.31 Total: -1.00 -30.86 352.69 -7.95 -38.81 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -7.68 Total: 8.98 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.83 Total: -9.43 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: 0.16 Total: -49.14 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.09 Total: -10.72 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.86 -7.95 -38.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595995078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.530 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds