Wall clock time and date at job start Mon Mar 30 2020 01:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46496 * 119.99887 * 2 1 4 4 C 1.53000 * 109.47518 * 270.00062 * 3 2 1 5 5 H 1.09000 * 115.54697 * 330.72548 * 4 3 2 6 6 C 1.53003 * 117.49859 * 116.38976 * 4 3 2 7 7 C 1.52997 * 117.50022 * 185.01313 * 4 3 2 8 8 C 1.53001 * 117.50236 * 0.02562 * 7 4 3 9 9 C 1.53007 * 117.49759 * 145.01978 * 7 4 3 10 10 C 1.34772 * 119.99891 * 180.02562 * 2 1 3 11 11 O 1.21283 * 119.99912 * 179.97438 * 10 2 1 12 12 C 1.50700 * 119.99971 * 0.02562 * 10 2 1 13 13 H 1.09001 * 109.46817 * 319.98961 * 12 10 2 14 14 N 1.46910 * 109.46728 * 199.99907 * 12 10 2 15 15 C 1.52992 * 109.47798 * 79.99728 * 12 10 2 16 16 C 1.52997 * 109.47482 * 185.00026 * 15 12 10 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47432 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46890 * 120.00210 * 21 19 17 24 24 H 1.48501 * 109.47062 * 240.00257 * 21 19 17 25 25 H 1.08999 * 109.47148 * 269.99866 * 1 2 3 26 26 H 1.09009 * 109.47280 * 29.99507 * 1 2 3 27 27 H 1.09001 * 109.47444 * 149.99353 * 1 2 3 28 28 H 1.09006 * 109.47491 * 30.00371 * 3 2 1 29 29 H 1.08999 * 109.47041 * 150.00379 * 3 2 1 30 30 H 1.08996 * 117.49767 * 214.98027 * 6 4 3 31 31 H 1.09000 * 117.49865 * 359.97438 * 6 4 3 32 32 H 1.09002 * 109.46740 * 59.99391 * 8 7 4 33 33 H 1.09000 * 109.47415 * 180.02562 * 8 7 4 34 34 H 1.09003 * 109.46805 * 299.99938 * 8 7 4 35 35 H 1.09007 * 109.46637 * 60.00676 * 9 7 4 36 36 H 1.08998 * 109.47150 * 179.97438 * 9 7 4 37 37 H 1.08997 * 109.47338 * 300.00308 * 9 7 4 38 38 H 1.00894 * 110.99558 * 176.04306 * 14 12 10 39 39 H 1.00892 * 110.99957 * 299.99600 * 14 12 10 40 40 H 1.09002 * 109.47103 * 64.99779 * 15 12 10 41 41 H 1.08998 * 109.46862 * 305.00591 * 15 12 10 42 42 H 1.09002 * 109.47153 * 59.99783 * 16 15 12 43 43 H 1.09001 * 109.46832 * 299.99974 * 16 15 12 44 44 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4525 1.7105 -1.4425 5 1 2.5429 0.9054 -2.1716 6 6 1.8017 3.0148 -1.9074 7 6 3.3102 2.9590 -1.6578 8 6 3.8478 3.6699 -0.4142 9 6 4.2299 2.9820 -2.8804 10 6 2.1388 -1.1672 -0.0005 11 8 3.3516 -1.1672 -0.0010 12 6 1.3853 -2.4723 -0.0017 13 1 0.5217 -2.3937 0.6588 14 7 2.2675 -3.5474 0.4716 15 6 0.9138 -2.7878 -1.4225 16 6 0.0439 -4.0463 -1.4036 17 6 -0.4211 -4.3567 -2.8031 18 1 -0.1253 -3.7203 -3.6240 19 6 -1.2232 -5.4538 -3.0356 20 7 -1.5829 -6.2290 -2.0360 21 14 -1.7989 -5.8390 -4.7704 22 1 -1.2595 -4.8217 -5.7083 23 1 -1.3112 -7.1846 -5.1664 24 1 -3.2830 -5.8171 -4.8157 25 1 -0.3633 0.0000 1.0277 26 1 -0.3634 0.8901 -0.5138 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6084 2.0284 0.5139 29 1 3.1499 1.1384 0.5138 30 1 1.4645 3.0680 -2.9425 31 1 1.1915 3.5580 -1.1857 32 1 4.4757 2.9834 0.1537 33 1 4.4366 4.5359 -0.7168 34 1 3.0135 3.9971 0.2063 35 1 3.6321 2.8835 -3.7866 36 1 4.7759 3.9250 -2.9066 37 1 4.9363 2.1542 -2.8193 38 1 1.7674 -4.4209 0.5414 39 1 3.0762 -3.6403 -0.1244 40 1 1.7792 -2.9540 -2.0640 41 1 0.3323 -1.9498 -1.8068 42 1 -0.8216 -3.8801 -0.7621 43 1 0.6255 -4.8842 -1.0193 44 1 -2.1476 -7.0006 -2.1996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595995078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:37 Heat of formation + Delta-G solvation = -50.613773 kcal Electronic energy + Delta-G solvation = -21045.383982 eV Core-core repulsion = 17996.892708 eV Total energy + Delta-G solvation = -3048.491274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.25419 -39.49436 -37.12273 -36.38674 -34.85170 -31.71223 -30.95975 -29.09008 -28.37689 -27.99536 -26.91388 -25.00152 -22.50306 -21.99982 -20.14485 -19.62769 -18.77487 -18.18969 -17.39544 -16.59265 -16.40270 -16.04475 -15.80334 -15.33264 -15.16630 -14.77099 -14.67475 -14.36937 -14.05834 -13.80123 -13.74188 -13.47507 -13.30978 -13.26308 -13.04421 -12.89527 -12.78863 -12.61751 -12.50849 -12.40618 -12.01331 -11.79577 -11.71382 -11.29383 -10.82880 -10.73756 -10.57231 -10.44710 -9.71700 -9.58662 -8.22122 -6.32439 1.38070 1.39784 1.51345 1.58427 1.97324 2.39352 2.79355 3.11549 3.50393 3.69924 3.75518 3.83596 3.89779 4.09031 4.18446 4.22010 4.24339 4.34930 4.52885 4.61177 4.67598 4.72106 4.76151 4.81243 4.85517 4.92740 4.95729 5.03084 5.04275 5.06785 5.08967 5.22484 5.27729 5.45213 5.46023 5.60264 5.64333 5.79853 6.03504 6.20299 6.36127 6.45680 6.82639 7.16776 7.36722 8.88830 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.021561 B = 0.004095 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.347922 B = 6835.650853 C = 7475.735279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.610 5.610 3 C 0.152 3.848 4 C -0.176 4.176 5 H 0.072 0.928 6 C -0.154 4.154 7 C -0.124 4.124 8 C -0.115 4.115 9 C -0.117 4.117 10 C 0.522 3.478 11 O -0.572 6.572 12 C 0.081 3.919 13 H 0.108 0.892 14 N -0.830 5.830 15 C -0.120 4.120 16 C 0.032 3.968 17 C -0.544 4.544 18 H 0.053 0.947 19 C 0.007 3.993 20 N -0.925 5.925 21 Si 0.958 3.042 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.275 1.275 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.352 0.648 39 H 0.342 0.658 40 H 0.039 0.961 41 H 0.067 0.933 42 H 0.004 0.996 43 H 0.001 0.999 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.751 20.284 3.196 21.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.343 5.343 3 C 0.029 3.971 4 C -0.195 4.195 5 H 0.090 0.910 6 C -0.191 4.191 7 C -0.125 4.125 8 C -0.172 4.172 9 C -0.175 4.175 10 C 0.310 3.690 11 O -0.451 6.451 12 C -0.034 4.034 13 H 0.126 0.874 14 N -0.362 5.362 15 C -0.160 4.160 16 C -0.005 4.005 17 C -0.582 4.582 18 H 0.071 0.929 19 C -0.192 4.192 20 N -0.565 5.565 21 Si 0.784 3.216 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.201 1.201 25 H 0.094 0.906 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.124 0.876 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.132 0.868 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.167 0.833 39 H 0.155 0.845 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.023 0.977 43 H 0.020 0.980 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.350 20.583 3.925 21.627 hybrid contribution -0.571 -1.343 -1.912 2.405 sum 4.780 19.240 2.014 19.927 Atomic orbital electron populations 1.22156 0.77513 1.04605 1.03379 1.47867 1.08217 1.05288 1.72895 1.21036 0.97157 0.84346 0.94517 1.22735 1.07176 0.91878 0.97730 0.90950 1.23403 0.94426 0.98453 1.02770 1.21720 0.92901 0.99401 0.98465 1.21367 1.01375 0.99633 0.94782 1.21382 0.98577 1.02195 0.95302 1.20802 0.87482 0.86084 0.74595 1.90604 1.15491 1.87871 1.51121 1.21422 0.95471 0.89733 0.96753 0.87441 1.58770 1.10866 1.09388 1.57127 1.22155 0.99253 0.99902 0.94657 1.18954 0.93777 0.91996 0.95786 1.21617 1.30839 1.10886 0.94844 0.92899 1.25846 0.96259 0.96016 1.01068 1.70064 1.37044 1.16643 1.32791 0.85498 0.78194 0.78079 0.79876 1.19112 1.20590 1.20093 0.90563 0.88640 0.91237 0.87567 0.91462 0.88853 0.86797 0.92995 0.90923 0.91114 0.92623 0.90517 0.93537 0.83256 0.84466 0.94210 0.91445 0.97716 0.98028 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.37 9.85 127.77 1.26 2.63 16 2 N -0.61 -16.34 2.87 -846.76 -2.43 -18.78 16 3 C 0.15 3.45 4.77 86.38 0.41 3.86 16 4 C -0.18 -4.00 5.73 -10.79 -0.06 -4.06 16 5 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 6 C -0.15 -2.57 9.47 30.60 0.29 -2.28 16 7 C -0.12 -2.29 2.70 -52.18 -0.14 -2.43 16 8 C -0.11 -1.71 8.86 71.98 0.64 -1.07 16 9 C -0.12 -2.14 9.85 71.98 0.71 -1.43 16 10 C 0.52 18.10 6.93 87.66 0.61 18.71 16 11 O -0.57 -23.49 15.83 -3.04 -0.05 -23.54 16 12 C 0.08 2.86 2.36 44.16 0.10 2.97 16 13 H 0.11 3.52 7.21 -2.39 -0.02 3.51 16 14 N -0.83 -30.00 8.94 -171.79 -1.54 -31.53 16 15 C -0.12 -4.81 4.45 30.59 0.14 -4.68 16 16 C 0.03 1.58 4.74 29.85 0.14 1.72 16 17 C -0.54 -29.95 9.11 25.60 0.23 -29.72 16 18 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 19 C 0.01 0.37 5.46 84.66 0.46 0.84 16 20 N -0.93 -54.11 13.29 21.45 0.28 -53.82 16 21 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 25 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 1.54 8.07 -2.38 -0.02 1.52 16 27 H 0.07 1.73 4.83 -2.39 -0.01 1.72 16 28 H 0.11 1.72 7.81 -2.38 -0.02 1.70 16 29 H 0.07 1.80 7.05 -2.39 -0.02 1.78 16 30 H 0.09 1.56 8.05 -2.39 -0.02 1.54 16 31 H 0.11 1.44 7.94 -2.39 -0.02 1.43 16 32 H 0.05 0.89 7.83 -2.39 -0.02 0.87 16 33 H 0.07 0.90 7.92 -2.39 -0.02 0.88 16 34 H 0.07 0.85 7.90 -2.39 -0.02 0.84 16 35 H 0.05 1.00 7.90 -2.38 -0.02 0.98 16 36 H 0.08 1.11 7.92 -2.39 -0.02 1.09 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.35 12.74 7.55 -89.70 -0.68 12.06 16 39 H 0.34 12.69 8.58 -89.70 -0.77 11.92 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 2.56 6.43 -2.39 -0.02 2.55 16 42 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.00 0.08 6.87 -2.39 -0.02 0.06 16 44 H 0.26 14.54 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -66.65 352.69 2.62 -64.03 By element: Atomic # 1 Polarization: 33.67 SS G_CDS: -0.46 Total: 33.21 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.79 Total: -14.95 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -3.68 Total: -104.13 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -66.65 2.62 -64.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595995078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.412 kcal (2) G-P(sol) polarization free energy of solvation -66.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds