Wall clock time and date at job start Mon Mar 30 2020 01:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 120.00244 * 2 1 4 4 C 1.53001 * 109.47077 * 269.99944 * 3 2 1 5 5 H 1.08995 * 115.54996 * 330.58901 * 4 3 2 6 6 C 1.53000 * 117.49819 * 116.24850 * 4 3 2 7 7 C 1.53000 * 117.50000 * 184.91021 * 4 3 2 8 8 C 1.53001 * 117.49537 * 0.02562 * 7 4 3 9 9 C 1.52996 * 117.49931 * 145.01839 * 7 4 3 10 10 C 1.34772 * 119.99491 * 179.97438 * 2 1 3 11 11 O 1.21287 * 119.99711 * 180.02562 * 10 2 1 12 12 C 1.50699 * 120.00370 * 0.02562 * 10 2 1 13 13 H 1.09002 * 109.46959 * 39.99927 * 12 10 2 14 14 N 1.46901 * 109.47121 * 160.00169 * 12 10 2 15 15 C 1.53000 * 109.47083 * 279.99712 * 12 10 2 16 16 C 1.53005 * 109.46867 * 174.99799 * 15 12 10 17 17 C 1.50697 * 109.46774 * 180.02562 * 16 15 12 18 18 H 1.08004 * 120.00429 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99805 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00106 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00034 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47149 * 89.99814 * 21 19 17 23 23 H 1.48502 * 109.47152 * 209.99949 * 21 19 17 24 24 H 1.48507 * 109.47065 * 329.99972 * 21 19 17 25 25 H 1.09003 * 109.47301 * 270.00606 * 1 2 3 26 26 H 1.09005 * 109.46875 * 29.99780 * 1 2 3 27 27 H 1.08998 * 109.47226 * 150.00069 * 1 2 3 28 28 H 1.09006 * 109.47086 * 29.99995 * 3 2 1 29 29 H 1.08992 * 109.47048 * 149.99968 * 3 2 1 30 30 H 1.08994 * 117.50116 * 214.97990 * 6 4 3 31 31 H 1.09001 * 117.50006 * 359.97438 * 6 4 3 32 32 H 1.08999 * 109.47280 * 59.99540 * 8 7 4 33 33 H 1.09004 * 109.47175 * 179.97438 * 8 7 4 34 34 H 1.08998 * 109.47188 * 299.99352 * 8 7 4 35 35 H 1.09007 * 109.46957 * 60.00394 * 9 7 4 36 36 H 1.09003 * 109.47116 * 180.02562 * 9 7 4 37 37 H 1.09001 * 109.47165 * 300.00893 * 9 7 4 38 38 H 1.00898 * 111.00245 * 59.99841 * 14 12 10 39 39 H 1.00904 * 111.00313 * 183.95658 * 14 12 10 40 40 H 1.08990 * 109.47170 * 295.00011 * 15 12 10 41 41 H 1.09001 * 109.46952 * 55.00087 * 15 12 10 42 42 H 1.09000 * 109.47443 * 300.00098 * 16 15 12 43 43 H 1.09001 * 109.47099 * 60.00379 * 16 15 12 44 44 H 0.97002 * 119.99985 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.5453 0.9052 -2.1712 6 6 1.7992 3.0130 -1.9085 7 6 3.3084 2.9602 -1.6579 8 6 3.8442 3.6723 -0.4142 9 6 4.2287 2.9843 -2.8799 10 6 2.1388 -1.1672 0.0005 11 8 3.3517 -1.1673 0.0010 12 6 1.3853 -2.4723 0.0005 13 1 0.5221 -2.3934 -0.6604 14 7 2.2677 -3.5472 -0.4726 15 6 0.9129 -2.7884 1.4210 16 6 0.0429 -4.0469 1.4009 17 6 -0.4229 -4.3579 2.7999 18 1 -0.1284 -3.7214 3.6212 19 6 -1.2253 -5.4550 3.0314 20 7 -1.5844 -6.2298 2.0313 21 14 -1.8021 -5.8410 4.7657 22 1 -3.0932 -5.1537 5.0224 23 1 -1.9844 -7.3075 4.9119 24 1 -0.7873 -5.3686 5.7416 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5139 29 1 3.1499 1.1383 0.5138 30 1 1.4626 3.0649 -2.9438 31 1 1.1873 3.5551 -1.1875 32 1 4.4729 2.9871 0.1543 33 1 4.4325 4.5387 -0.7167 34 1 3.0091 3.9985 0.2058 35 1 3.6316 2.8844 -3.7864 36 1 4.7738 3.9278 -2.9057 37 1 4.9364 2.1576 -2.8181 38 1 3.0761 -3.6404 0.1240 39 1 1.7678 -4.4209 -0.5431 40 1 1.7778 -2.9549 2.0629 41 1 0.3310 -1.9506 1.8053 42 1 -0.8221 -3.8804 0.7589 43 1 0.6247 -4.8847 1.0166 44 1 -2.1492 -7.0015 2.1941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595995079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:40 Heat of formation + Delta-G solvation = -31.105204 kcal Electronic energy + Delta-G solvation = -20895.504697 eV Core-core repulsion = 17847.859378 eV Total energy + Delta-G solvation = -3047.645319 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00849 -38.57455 -35.50227 -35.19495 -32.84926 -30.11439 -29.85528 -28.22188 -27.45636 -26.74342 -25.40216 -23.43920 -21.47742 -20.38923 -18.94851 -18.72493 -17.28009 -16.38513 -16.15847 -15.43267 -14.89891 -14.52560 -14.37493 -14.21722 -14.00806 -13.70697 -13.41517 -13.01298 -12.88897 -12.60512 -12.51956 -12.37563 -12.24617 -12.12304 -12.00764 -11.69017 -11.52821 -11.27180 -11.04178 -10.89654 -10.68263 -10.00078 -9.96330 -9.91332 -9.71633 -9.25923 -9.13471 -8.53700 -8.43877 -8.14893 -6.08642 -4.11689 2.95402 3.08760 3.26678 3.33618 3.37031 3.58972 4.39168 4.47588 4.56781 4.64079 4.86964 4.88831 5.17083 5.19507 5.23709 5.27642 5.33395 5.44154 5.48104 5.55020 5.60928 5.65844 5.70539 5.72795 5.75918 5.79574 5.81703 5.90668 5.95616 6.06371 6.17204 6.31809 6.53436 6.66443 6.88637 7.40489 7.52093 7.60965 7.67267 7.88566 7.93374 8.31433 8.48400 8.94296 9.53203 11.02251 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035596 B = 0.003458 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.420808 B = 8094.646180 C = 8354.767718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.618 5.618 3 C 0.149 3.851 4 C -0.154 4.154 5 H 0.105 0.895 6 C -0.173 4.173 7 C -0.124 4.124 8 C -0.117 4.117 9 C -0.115 4.115 10 C 0.525 3.475 11 O -0.537 6.537 12 C 0.074 3.926 13 H 0.097 0.903 14 N -0.831 5.831 15 C -0.137 4.137 16 C 0.025 3.975 17 C -0.523 4.523 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 H 0.060 0.940 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.345 0.655 39 H 0.353 0.647 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.018 0.982 43 H 0.017 0.983 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.622 18.239 -7.364 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.352 5.352 3 C 0.026 3.974 4 C -0.173 4.173 5 H 0.123 0.877 6 C -0.210 4.210 7 C -0.125 4.125 8 C -0.174 4.174 9 C -0.172 4.172 10 C 0.314 3.686 11 O -0.413 6.413 12 C -0.041 4.041 13 H 0.115 0.885 14 N -0.363 5.363 15 C -0.177 4.177 16 C -0.012 4.012 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.247 18.498 -8.066 21.125 hybrid contribution -0.841 -0.717 1.812 2.122 sum 5.406 17.781 -6.255 19.609 Atomic orbital electron populations 1.21896 0.79209 1.03233 1.02338 1.47809 1.07088 1.05600 1.74689 1.20913 0.97650 0.84763 0.94070 1.22912 1.04066 0.91618 0.98709 0.87676 1.23347 0.94658 1.00892 1.02115 1.21575 0.92275 1.00861 0.97797 1.21353 1.00912 0.99634 0.95472 1.21346 0.98664 1.01907 0.95247 1.20912 0.87956 0.85304 0.74451 1.90624 1.14145 1.87312 1.49177 1.21530 0.95016 0.89270 0.98300 0.88524 1.58761 1.10967 1.09312 1.57298 1.22373 1.00596 1.01658 0.93078 1.19094 0.93979 0.90666 0.97454 1.21183 1.30716 1.10663 0.93588 0.92741 1.25011 0.96139 0.96142 0.97015 1.69949 1.36325 1.16176 1.30759 0.86590 0.79104 0.77503 0.84800 1.20613 1.21153 1.19888 0.92101 0.91355 0.90370 0.90755 0.89622 0.89043 0.88874 0.91934 0.92215 0.92441 0.92604 0.92243 0.92067 0.84198 0.83142 0.92791 0.92440 0.96375 0.96435 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.88 9.56 59.85 0.57 1.45 16 2 N -0.62 -8.60 2.87 -181.57 -0.52 -9.12 16 3 C 0.15 1.80 4.77 -4.04 -0.02 1.78 16 4 C -0.15 -1.73 5.73 -90.62 -0.52 -2.25 16 5 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 6 C -0.17 -1.56 9.47 -26.69 -0.25 -1.81 16 7 C -0.12 -1.19 2.70 -154.47 -0.42 -1.61 16 8 C -0.12 -0.99 8.86 37.16 0.33 -0.66 16 9 C -0.11 -1.02 9.85 37.16 0.37 -0.65 16 10 C 0.53 9.10 6.93 -10.99 -0.08 9.02 16 11 O -0.54 -10.82 15.83 5.55 0.09 -10.73 16 12 C 0.07 1.29 2.47 -68.86 -0.17 1.12 16 13 H 0.10 1.61 6.31 -51.93 -0.33 1.28 16 14 N -0.83 -14.78 8.94 -5.65 -0.05 -14.83 16 15 C -0.14 -2.73 4.71 -26.73 -0.13 -2.86 16 16 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 17 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -25.98 13.29 55.43 0.74 -25.25 16 21 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 26 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 27 H 0.08 0.93 5.94 -51.93 -0.31 0.62 16 28 H 0.07 0.74 7.81 -51.93 -0.41 0.34 16 29 H 0.09 1.18 7.05 -51.93 -0.37 0.81 16 30 H 0.09 0.78 8.05 -51.93 -0.42 0.36 16 31 H 0.09 0.75 7.94 -51.93 -0.41 0.33 16 32 H 0.06 0.57 7.84 -51.93 -0.41 0.17 16 33 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 34 H 0.06 0.44 7.90 -51.93 -0.41 0.03 16 35 H 0.05 0.47 7.90 -51.92 -0.41 0.06 16 36 H 0.06 0.45 7.92 -51.93 -0.41 0.04 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.34 6.22 8.58 -39.29 -0.34 5.88 16 39 H 0.35 6.24 7.55 -39.29 -0.30 5.95 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.06 1.10 6.94 -51.93 -0.36 0.74 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 44 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -30.98 353.01 -7.99 -38.97 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.69 Total: 8.51 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -0.86 Total: -9.09 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.16 Total: -49.20 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.98 -7.99 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595995079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.867 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds