Wall clock time and date at job start Mon Mar 30 2020 01:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 120.00244 * 2 1 4 4 C 1.53001 * 109.47077 * 269.99944 * 3 2 1 5 5 H 1.08995 * 115.54996 * 330.58901 * 4 3 2 6 6 C 1.53000 * 117.49819 * 116.24850 * 4 3 2 7 7 C 1.53000 * 117.50000 * 184.91021 * 4 3 2 8 8 C 1.53001 * 117.49537 * 0.02562 * 7 4 3 9 9 C 1.52996 * 117.49931 * 145.01839 * 7 4 3 10 10 C 1.34772 * 119.99491 * 179.97438 * 2 1 3 11 11 O 1.21287 * 119.99711 * 180.02562 * 10 2 1 12 12 C 1.50699 * 120.00370 * 0.02562 * 10 2 1 13 13 H 1.09002 * 109.46959 * 39.99927 * 12 10 2 14 14 N 1.46901 * 109.47121 * 160.00169 * 12 10 2 15 15 C 1.53000 * 109.47083 * 279.99712 * 12 10 2 16 16 C 1.53005 * 109.46867 * 174.99799 * 15 12 10 17 17 C 1.50697 * 109.46774 * 180.02562 * 16 15 12 18 18 H 1.08004 * 120.00429 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99805 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00106 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00034 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47149 * 89.99814 * 21 19 17 23 23 H 1.48502 * 109.47152 * 209.99949 * 21 19 17 24 24 H 1.48507 * 109.47065 * 329.99972 * 21 19 17 25 25 H 1.09003 * 109.47301 * 270.00606 * 1 2 3 26 26 H 1.09005 * 109.46875 * 29.99780 * 1 2 3 27 27 H 1.08998 * 109.47226 * 150.00069 * 1 2 3 28 28 H 1.09006 * 109.47086 * 29.99995 * 3 2 1 29 29 H 1.08992 * 109.47048 * 149.99968 * 3 2 1 30 30 H 1.08994 * 117.50116 * 214.97990 * 6 4 3 31 31 H 1.09001 * 117.50006 * 359.97438 * 6 4 3 32 32 H 1.08999 * 109.47280 * 59.99540 * 8 7 4 33 33 H 1.09004 * 109.47175 * 179.97438 * 8 7 4 34 34 H 1.08998 * 109.47188 * 299.99352 * 8 7 4 35 35 H 1.09007 * 109.46957 * 60.00394 * 9 7 4 36 36 H 1.09003 * 109.47116 * 180.02562 * 9 7 4 37 37 H 1.09001 * 109.47165 * 300.00893 * 9 7 4 38 38 H 1.00898 * 111.00245 * 59.99841 * 14 12 10 39 39 H 1.00904 * 111.00313 * 183.95658 * 14 12 10 40 40 H 1.08990 * 109.47170 * 295.00011 * 15 12 10 41 41 H 1.09001 * 109.46952 * 55.00087 * 15 12 10 42 42 H 1.09000 * 109.47443 * 300.00098 * 16 15 12 43 43 H 1.09001 * 109.47099 * 60.00379 * 16 15 12 44 44 H 0.97002 * 119.99985 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4425 5 1 2.5453 0.9052 -2.1712 6 6 1.7992 3.0130 -1.9085 7 6 3.3084 2.9602 -1.6579 8 6 3.8442 3.6723 -0.4142 9 6 4.2287 2.9843 -2.8799 10 6 2.1388 -1.1672 0.0005 11 8 3.3517 -1.1673 0.0010 12 6 1.3853 -2.4723 0.0005 13 1 0.5221 -2.3934 -0.6604 14 7 2.2677 -3.5472 -0.4726 15 6 0.9129 -2.7884 1.4210 16 6 0.0429 -4.0469 1.4009 17 6 -0.4229 -4.3579 2.7999 18 1 -0.1284 -3.7214 3.6212 19 6 -1.2253 -5.4550 3.0314 20 7 -1.5844 -6.2298 2.0313 21 14 -1.8021 -5.8410 4.7657 22 1 -3.0932 -5.1537 5.0224 23 1 -1.9844 -7.3075 4.9119 24 1 -0.7873 -5.3686 5.7416 25 1 -0.3634 0.0001 1.0277 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6085 2.0284 0.5139 29 1 3.1499 1.1383 0.5138 30 1 1.4626 3.0649 -2.9438 31 1 1.1873 3.5551 -1.1875 32 1 4.4729 2.9871 0.1543 33 1 4.4325 4.5387 -0.7167 34 1 3.0091 3.9985 0.2058 35 1 3.6316 2.8844 -3.7864 36 1 4.7738 3.9278 -2.9057 37 1 4.9364 2.1576 -2.8181 38 1 3.0761 -3.6404 0.1240 39 1 1.7678 -4.4209 -0.5431 40 1 1.7778 -2.9549 2.0629 41 1 0.3310 -1.9506 1.8053 42 1 -0.8221 -3.8804 0.7589 43 1 0.6247 -4.8847 1.0166 44 1 -2.1492 -7.0015 2.1941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595995079.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:39 Heat of formation + Delta-G solvation = -50.477305 kcal Electronic energy + Delta-G solvation = -20896.344734 eV Core-core repulsion = 17847.859378 eV Total energy + Delta-G solvation = -3048.485356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.24371 -39.48532 -37.10044 -36.38717 -34.84531 -31.69630 -30.95804 -29.08074 -28.36621 -28.01244 -26.88411 -25.01318 -22.60565 -21.88283 -20.11890 -19.65094 -18.77121 -18.17541 -17.42346 -16.60368 -16.37450 -16.00208 -15.76398 -15.30817 -15.17837 -14.82990 -14.63764 -14.36515 -14.01880 -13.85598 -13.72472 -13.55980 -13.30895 -13.19664 -13.03087 -12.88235 -12.80774 -12.58281 -12.52275 -12.37704 -12.00384 -11.78763 -11.69880 -11.30182 -10.81462 -10.73319 -10.55807 -10.44586 -9.71078 -9.59015 -8.21241 -6.31658 1.39719 1.40721 1.51174 1.59293 1.96500 2.40149 2.80126 3.12371 3.50412 3.71617 3.74351 3.84182 3.90554 4.03366 4.19242 4.19482 4.27688 4.37827 4.53057 4.63221 4.68081 4.75043 4.76840 4.81636 4.86589 4.94063 4.97224 5.03770 5.04721 5.07483 5.09102 5.23238 5.28841 5.45417 5.46518 5.60200 5.65240 5.80383 6.03711 6.21195 6.36058 6.45914 6.83516 7.16908 7.37474 8.89535 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035596 B = 0.003458 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.420808 B = 8094.646180 C = 8354.767718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.610 5.610 3 C 0.150 3.850 4 C -0.173 4.173 5 H 0.078 0.922 6 C -0.152 4.152 7 C -0.127 4.127 8 C -0.116 4.116 9 C -0.116 4.116 10 C 0.522 3.478 11 O -0.572 6.572 12 C 0.080 3.920 13 H 0.108 0.892 14 N -0.831 5.831 15 C -0.119 4.119 16 C 0.032 3.968 17 C -0.544 4.544 18 H 0.054 0.946 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.270 1.270 23 H -0.283 1.283 24 H -0.268 1.268 25 H 0.065 0.935 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.049 0.951 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.046 0.954 38 H 0.343 0.657 39 H 0.352 0.648 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.003 0.997 43 H 0.001 0.999 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 20.293 -6.864 21.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.342 5.342 3 C 0.028 3.972 4 C -0.192 4.192 5 H 0.096 0.904 6 C -0.188 4.188 7 C -0.127 4.127 8 C -0.173 4.173 9 C -0.173 4.173 10 C 0.310 3.690 11 O -0.451 6.451 12 C -0.035 4.035 13 H 0.126 0.874 14 N -0.363 5.363 15 C -0.159 4.159 16 C -0.005 4.005 17 C -0.582 4.582 18 H 0.073 0.927 19 C -0.193 4.193 20 N -0.566 5.566 21 Si 0.784 3.216 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.193 1.193 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.082 0.918 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.065 0.935 38 H 0.156 0.844 39 H 0.167 0.833 40 H 0.059 0.941 41 H 0.086 0.914 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.320 20.589 -7.571 22.573 hybrid contribution -0.562 -1.325 1.610 2.160 sum 4.758 19.264 -5.961 20.719 Atomic orbital electron populations 1.22100 0.77466 1.04615 1.03017 1.47871 1.08225 1.05285 1.72836 1.21032 0.96998 0.84324 0.94875 1.22706 1.07085 0.91958 0.97449 0.90399 1.23416 0.94215 0.98341 1.02874 1.21735 0.93088 0.99487 0.98422 1.21370 1.01315 0.99659 0.94965 1.21368 0.98528 1.02139 0.95255 1.20793 0.87488 0.86079 0.74633 1.90606 1.15485 1.87857 1.51193 1.21457 0.95410 0.89700 0.96904 0.87406 1.58773 1.10927 1.09408 1.57159 1.22109 0.99294 0.99906 0.94566 1.18947 0.93752 0.92031 0.95755 1.21607 1.30850 1.10886 0.94904 0.92750 1.25861 0.96286 0.96022 1.01098 1.70060 1.37013 1.16682 1.32884 0.85540 0.78891 0.77316 0.79861 1.19566 1.20859 1.19293 0.91674 0.88222 0.90859 0.87915 0.91765 0.88377 0.87094 0.93194 0.90921 0.91323 0.92268 0.90695 0.93535 0.84435 0.83276 0.94073 0.91423 0.97835 0.98112 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 9.56 127.77 1.22 2.68 16 2 N -0.61 -16.32 2.87 -846.74 -2.43 -18.75 16 3 C 0.15 3.43 4.77 86.38 0.41 3.84 16 4 C -0.17 -3.69 5.73 -10.79 -0.06 -3.75 16 5 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 6 C -0.15 -2.30 9.47 30.62 0.29 -2.01 16 7 C -0.13 -2.21 2.70 -52.16 -0.14 -2.35 16 8 C -0.12 -1.74 8.86 71.98 0.64 -1.10 16 9 C -0.12 -1.92 9.85 71.98 0.71 -1.21 16 10 C 0.52 18.07 6.93 87.66 0.61 18.68 16 11 O -0.57 -23.53 15.83 -3.05 -0.05 -23.57 16 12 C 0.08 2.82 2.47 44.17 0.11 2.93 16 13 H 0.11 3.55 6.31 -2.39 -0.02 3.53 16 14 N -0.83 -30.11 8.94 -171.80 -1.54 -31.64 16 15 C -0.12 -4.74 4.71 30.60 0.14 -4.59 16 16 C 0.03 1.59 4.74 29.85 0.14 1.73 16 17 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 18 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 19 C 0.01 0.33 5.46 84.66 0.46 0.79 16 20 N -0.93 -54.24 13.29 21.45 0.28 -53.96 16 21 Si 0.96 43.25 29.54 68.60 2.03 45.27 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 H 0.06 1.34 7.65 -2.39 -0.02 1.32 16 26 H 0.10 1.48 8.07 -2.38 -0.02 1.46 16 27 H 0.07 1.62 5.94 -2.39 -0.01 1.61 16 28 H 0.10 1.75 7.81 -2.38 -0.02 1.73 16 29 H 0.06 1.76 7.05 -2.39 -0.02 1.74 16 30 H 0.10 1.38 8.05 -2.39 -0.02 1.36 16 31 H 0.11 1.31 7.94 -2.39 -0.02 1.30 16 32 H 0.05 0.88 7.84 -2.39 -0.02 0.86 16 33 H 0.07 0.90 7.92 -2.39 -0.02 0.88 16 34 H 0.07 0.86 7.90 -2.39 -0.02 0.84 16 35 H 0.06 0.92 7.90 -2.38 -0.02 0.90 16 36 H 0.07 1.00 7.92 -2.39 -0.02 0.98 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.34 12.70 8.58 -89.70 -0.77 11.93 16 39 H 0.35 12.77 7.55 -89.69 -0.68 12.09 16 40 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.07 2.53 6.94 -2.39 -0.02 2.51 16 42 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 43 H 0.00 0.03 6.87 -2.39 -0.02 0.01 16 44 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -66.59 353.01 2.60 -63.99 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: -0.46 Total: 32.70 kcal Atomic # 6 Polarization: -18.80 SS G_CDS: 4.76 Total: -14.04 kcal Atomic # 7 Polarization: -100.67 SS G_CDS: -3.68 Total: -104.35 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -66.59 2.60 -63.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595995079.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.514 kcal (2) G-P(sol) polarization free energy of solvation -66.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds