Wall clock time and date at job start Mon Mar 30 2020 01:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46504 * 119.99382 * 2 1 4 4 C 1.52996 * 109.47191 * 269.99870 * 3 2 1 5 5 H 1.09001 * 115.55122 * 29.42002 * 4 3 2 6 6 C 1.53000 * 117.50086 * 243.75211 * 4 3 2 7 7 C 1.52998 * 117.50008 * 175.09377 * 4 3 2 8 8 C 1.53003 * 117.49637 * 214.98241 * 7 4 3 9 9 C 1.53001 * 117.49626 * 359.97438 * 7 4 3 10 10 C 1.34768 * 120.00191 * 180.02562 * 2 1 3 11 11 O 1.21283 * 120.00179 * 179.97438 * 10 2 1 12 12 C 1.50703 * 120.00084 * 359.97438 * 10 2 1 13 13 H 1.09002 * 109.47152 * 40.00061 * 12 10 2 14 14 N 1.46899 * 109.47107 * 159.99973 * 12 10 2 15 15 C 1.53002 * 109.46966 * 280.00201 * 12 10 2 16 16 C 1.53003 * 109.46754 * 174.99919 * 15 12 10 17 17 C 1.50702 * 109.46809 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00460 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99585 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00393 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99559 * 180.02562 * 19 17 16 22 22 H 1.48488 * 109.47268 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46804 * 120.00303 * 21 19 17 24 24 H 1.48497 * 109.46914 * 239.99686 * 21 19 17 25 25 H 1.08994 * 109.47132 * 269.99690 * 1 2 3 26 26 H 1.08996 * 109.47561 * 30.00118 * 1 2 3 27 27 H 1.09002 * 109.46729 * 150.00058 * 1 2 3 28 28 H 1.08997 * 109.47521 * 30.00107 * 3 2 1 29 29 H 1.09001 * 109.46828 * 149.99928 * 3 2 1 30 30 H 1.09004 * 117.49805 * 0.02562 * 6 4 3 31 31 H 1.08994 * 117.50203 * 144.99222 * 6 4 3 32 32 H 1.08997 * 109.47308 * 59.99772 * 8 7 4 33 33 H 1.09001 * 109.46694 * 179.97438 * 8 7 4 34 34 H 1.09000 * 109.47166 * 299.99085 * 8 7 4 35 35 H 1.08997 * 109.46899 * 60.00946 * 9 7 4 36 36 H 1.09004 * 109.47078 * 180.02562 * 9 7 4 37 37 H 1.08994 * 109.47360 * 300.00444 * 9 7 4 38 38 H 1.00903 * 110.99833 * 59.99796 * 14 12 10 39 39 H 1.00901 * 111.00152 * 183.95033 * 14 12 10 40 40 H 1.09000 * 109.47059 * 294.99880 * 15 12 10 41 41 H 1.08996 * 109.47073 * 54.99973 * 15 12 10 42 42 H 1.09000 * 109.47306 * 299.99810 * 16 15 12 43 43 H 1.09000 * 109.46927 * 59.99869 * 16 15 12 44 44 H 0.96996 * 119.99734 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.7087 1.3883 -2.1713 6 6 3.9072 1.7961 -1.9084 7 6 3.1069 3.0766 -1.6578 8 6 2.6676 3.8856 -2.8799 9 6 3.4558 3.8966 -0.4141 10 6 2.1390 -1.1671 -0.0005 11 8 3.3518 -1.1671 -0.0010 12 6 1.3855 -2.4723 -0.0005 13 1 0.5218 -2.3932 -0.6608 14 7 2.2676 -3.5469 -0.4748 15 6 0.9141 -2.7890 1.4202 16 6 0.0442 -4.0475 1.4002 17 6 -0.4196 -4.3598 2.7996 18 1 -0.1239 -3.7241 3.6211 19 6 -1.2214 -5.4573 3.0312 20 7 -1.5811 -6.2318 2.0310 21 14 -1.7969 -5.8440 4.7658 22 1 -1.2578 -4.8275 5.7044 23 1 -3.2811 -5.8227 4.8112 24 1 -1.3090 -7.1898 5.1607 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1386 0.5139 30 1 4.6827 1.5373 -1.1874 31 1 4.1206 1.5301 -2.9437 32 1 1.5979 4.0853 -2.8181 33 1 3.2122 4.8295 -2.9056 34 1 2.8797 3.3186 -3.7863 35 1 4.1558 3.3365 0.2058 36 1 3.9119 4.8393 -0.7166 37 1 2.5480 4.0985 0.1544 38 1 3.0765 -3.6402 0.1212 39 1 1.7677 -4.4205 -0.5453 40 1 1.7796 -2.9557 2.0615 41 1 0.3325 -1.9514 1.8052 42 1 -0.8213 -3.8808 0.7589 43 1 0.6259 -4.8851 1.0151 44 1 -2.1449 -7.0040 2.1941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595995080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:43 Heat of formation + Delta-G solvation = -30.903777 kcal Electronic energy + Delta-G solvation = -20911.939478 eV Core-core repulsion = 17864.302893 eV Total energy + Delta-G solvation = -3047.636584 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.99508 -38.52405 -35.49342 -35.20309 -32.84808 -30.12302 -29.85706 -28.17905 -27.42107 -26.73399 -25.48655 -23.47372 -21.31155 -20.37049 -18.96471 -18.73923 -17.34333 -16.37782 -16.07424 -15.35284 -14.80464 -14.64357 -14.39186 -14.19378 -14.02894 -13.71328 -13.43893 -12.95847 -12.88788 -12.60854 -12.52775 -12.40284 -12.26807 -12.12298 -11.97347 -11.64769 -11.46936 -11.27372 -11.05512 -10.89658 -10.66036 -9.97135 -9.92075 -9.89386 -9.73322 -9.24745 -9.13006 -8.52641 -8.44226 -8.14228 -6.08854 -4.11806 2.96981 3.09596 3.25761 3.33882 3.37853 3.63270 4.39143 4.52030 4.57655 4.71160 4.86730 4.90362 5.16716 5.21560 5.27509 5.29926 5.35778 5.38834 5.46783 5.52564 5.59893 5.69586 5.71682 5.72795 5.78178 5.82067 5.83701 5.89766 5.91196 6.14016 6.18590 6.31988 6.53280 6.66342 6.88731 7.41298 7.52336 7.61151 7.67895 7.88573 7.93750 8.31403 8.50165 8.94459 9.53164 11.02077 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.003460 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.843636 B = 8091.144135 C = 8368.921295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.619 5.619 3 C 0.149 3.851 4 C -0.158 4.158 5 H 0.103 0.897 6 C -0.159 4.159 7 C -0.130 4.130 8 C -0.113 4.113 9 C -0.116 4.116 10 C 0.526 3.474 11 O -0.535 6.535 12 C 0.074 3.926 13 H 0.097 0.903 14 N -0.831 5.831 15 C -0.137 4.137 16 C 0.025 3.975 17 C -0.522 4.522 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.284 1.284 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.345 0.655 39 H 0.353 0.647 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.018 0.982 43 H 0.017 0.983 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.456 18.381 -7.373 20.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.353 5.353 3 C 0.026 3.974 4 C -0.177 4.177 5 H 0.121 0.879 6 C -0.196 4.196 7 C -0.131 4.131 8 C -0.170 4.170 9 C -0.173 4.173 10 C 0.315 3.685 11 O -0.411 6.411 12 C -0.041 4.041 13 H 0.114 0.886 14 N -0.363 5.363 15 C -0.177 4.177 16 C -0.012 4.012 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.210 1.210 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.158 0.842 39 H 0.168 0.832 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.080 18.646 -8.074 21.209 hybrid contribution -0.794 -0.790 1.805 2.124 sum 5.286 17.857 -6.268 19.649 Atomic orbital electron populations 1.21900 0.79283 1.03167 1.02423 1.47810 1.07003 1.05670 1.74808 1.20917 0.97757 0.84613 0.94132 1.22877 0.96948 0.99340 0.98560 0.87905 1.23255 0.94431 0.99741 1.02208 1.21627 1.04660 0.89096 0.97704 1.21337 1.01009 0.99232 0.95445 1.21346 1.01239 0.99215 0.95518 1.20878 0.87956 0.85248 0.74419 1.90613 1.14133 1.87273 1.49061 1.21529 0.95020 0.89315 0.98247 0.88574 1.58761 1.10932 1.09311 1.57302 1.22373 1.00590 1.01644 0.93095 1.19100 0.93990 0.90676 0.97466 1.21221 1.30644 1.10631 0.93568 0.92688 1.25015 0.96138 0.96171 0.97016 1.69959 1.36445 1.16126 1.30675 0.86535 0.78456 0.78279 0.84747 1.19759 1.20943 1.20961 0.92044 0.91412 0.90365 0.90524 0.89944 0.88567 0.89192 0.92356 0.92235 0.92571 0.92272 0.92236 0.92230 0.84211 0.83166 0.92805 0.92451 0.96374 0.96438 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.86 9.57 59.85 0.57 1.43 16 2 N -0.62 -8.60 2.87 -181.57 -0.52 -9.12 16 3 C 0.15 1.80 4.77 -4.04 -0.02 1.78 16 4 C -0.16 -1.77 5.73 -90.62 -0.52 -2.29 16 5 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 6 C -0.16 -1.80 9.47 -26.70 -0.25 -2.05 16 7 C -0.13 -1.22 2.70 -154.47 -0.42 -1.63 16 8 C -0.11 -0.90 9.85 37.16 0.37 -0.53 16 9 C -0.12 -0.95 8.86 37.16 0.33 -0.62 16 10 C 0.53 9.10 6.93 -10.99 -0.08 9.03 16 11 O -0.54 -10.70 15.83 5.55 0.09 -10.61 16 12 C 0.07 1.29 2.47 -68.86 -0.17 1.12 16 13 H 0.10 1.60 6.31 -51.93 -0.33 1.27 16 14 N -0.83 -14.79 8.94 -5.65 -0.05 -14.84 16 15 C -0.14 -2.73 4.71 -26.73 -0.13 -2.86 16 16 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 17 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 21 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H 0.06 0.70 7.65 -51.93 -0.40 0.31 16 26 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 27 H 0.08 0.92 5.94 -51.93 -0.31 0.61 16 28 H 0.08 0.77 7.70 -51.93 -0.40 0.37 16 29 H 0.08 1.13 7.16 -51.93 -0.37 0.76 16 30 H 0.10 1.17 7.94 -51.93 -0.41 0.76 16 31 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.41 7.92 -51.93 -0.41 0.00 16 34 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 35 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 36 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 37 H 0.06 0.45 7.83 -51.93 -0.41 0.04 16 38 H 0.34 6.22 8.58 -39.29 -0.34 5.88 16 39 H 0.35 6.25 7.55 -39.29 -0.30 5.96 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.06 1.10 6.94 -51.93 -0.36 0.74 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 353.01 15.07 5.32 5.32 Total: -1.00 -30.98 353.01 -7.99 -38.97 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.69 Total: 8.57 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.86 Total: -9.25 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.16 Total: -49.21 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.98 -7.99 -38.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595995080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.068 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds