Wall clock time and date at job start Mon Mar 30 2020 01:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46504 * 119.99382 * 2 1 4 4 C 1.52996 * 109.47191 * 269.99870 * 3 2 1 5 5 H 1.09001 * 115.55122 * 29.42002 * 4 3 2 6 6 C 1.53000 * 117.50086 * 243.75211 * 4 3 2 7 7 C 1.52998 * 117.50008 * 175.09377 * 4 3 2 8 8 C 1.53003 * 117.49637 * 214.98241 * 7 4 3 9 9 C 1.53001 * 117.49626 * 359.97438 * 7 4 3 10 10 C 1.34768 * 120.00191 * 180.02562 * 2 1 3 11 11 O 1.21283 * 120.00179 * 179.97438 * 10 2 1 12 12 C 1.50703 * 120.00084 * 359.97438 * 10 2 1 13 13 H 1.09002 * 109.47152 * 40.00061 * 12 10 2 14 14 N 1.46899 * 109.47107 * 159.99973 * 12 10 2 15 15 C 1.53002 * 109.46966 * 280.00201 * 12 10 2 16 16 C 1.53003 * 109.46754 * 174.99919 * 15 12 10 17 17 C 1.50702 * 109.46809 * 179.97438 * 16 15 12 18 18 H 1.07997 * 120.00460 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99585 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00393 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99559 * 180.02562 * 19 17 16 22 22 H 1.48488 * 109.47268 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46804 * 120.00303 * 21 19 17 24 24 H 1.48497 * 109.46914 * 239.99686 * 21 19 17 25 25 H 1.08994 * 109.47132 * 269.99690 * 1 2 3 26 26 H 1.08996 * 109.47561 * 30.00118 * 1 2 3 27 27 H 1.09002 * 109.46729 * 150.00058 * 1 2 3 28 28 H 1.08997 * 109.47521 * 30.00107 * 3 2 1 29 29 H 1.09001 * 109.46828 * 149.99928 * 3 2 1 30 30 H 1.09004 * 117.49805 * 0.02562 * 6 4 3 31 31 H 1.08994 * 117.50203 * 144.99222 * 6 4 3 32 32 H 1.08997 * 109.47308 * 59.99772 * 8 7 4 33 33 H 1.09001 * 109.46694 * 179.97438 * 8 7 4 34 34 H 1.09000 * 109.47166 * 299.99085 * 8 7 4 35 35 H 1.08997 * 109.46899 * 60.00946 * 9 7 4 36 36 H 1.09004 * 109.47078 * 180.02562 * 9 7 4 37 37 H 1.08994 * 109.47360 * 300.00444 * 9 7 4 38 38 H 1.00903 * 110.99833 * 59.99796 * 14 12 10 39 39 H 1.00901 * 111.00152 * 183.95033 * 14 12 10 40 40 H 1.09000 * 109.47059 * 294.99880 * 15 12 10 41 41 H 1.08996 * 109.47073 * 54.99973 * 15 12 10 42 42 H 1.09000 * 109.47306 * 299.99810 * 16 15 12 43 43 H 1.09000 * 109.46927 * 59.99869 * 16 15 12 44 44 H 0.96996 * 119.99734 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 1 1.7087 1.3883 -2.1713 6 6 3.9072 1.7961 -1.9084 7 6 3.1069 3.0766 -1.6578 8 6 2.6676 3.8856 -2.8799 9 6 3.4558 3.8966 -0.4141 10 6 2.1390 -1.1671 -0.0005 11 8 3.3518 -1.1671 -0.0010 12 6 1.3855 -2.4723 -0.0005 13 1 0.5218 -2.3932 -0.6608 14 7 2.2676 -3.5469 -0.4748 15 6 0.9141 -2.7890 1.4202 16 6 0.0442 -4.0475 1.4002 17 6 -0.4196 -4.3598 2.7996 18 1 -0.1239 -3.7241 3.6211 19 6 -1.2214 -5.4573 3.0312 20 7 -1.5811 -6.2318 2.0310 21 14 -1.7969 -5.8440 4.7658 22 1 -1.2578 -4.8275 5.7044 23 1 -3.2811 -5.8227 4.8112 24 1 -1.3090 -7.1898 5.1607 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3634 0.8899 -0.5138 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0284 0.5138 29 1 3.1499 1.1386 0.5139 30 1 4.6827 1.5373 -1.1874 31 1 4.1206 1.5301 -2.9437 32 1 1.5979 4.0853 -2.8181 33 1 3.2122 4.8295 -2.9056 34 1 2.8797 3.3186 -3.7863 35 1 4.1558 3.3365 0.2058 36 1 3.9119 4.8393 -0.7166 37 1 2.5480 4.0985 0.1544 38 1 3.0765 -3.6402 0.1212 39 1 1.7677 -4.4205 -0.5453 40 1 1.7796 -2.9557 2.0615 41 1 0.3325 -1.9514 1.8052 42 1 -0.8213 -3.8808 0.7589 43 1 0.6259 -4.8851 1.0151 44 1 -2.1449 -7.0040 2.1941 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595995080.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:42 Heat of formation + Delta-G solvation = -50.195997 kcal Electronic energy + Delta-G solvation = -20912.776051 eV Core-core repulsion = 17864.302893 eV Total energy + Delta-G solvation = -3048.473158 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.23135 -39.46591 -37.08653 -36.39592 -34.84275 -31.69263 -30.95224 -29.05765 -28.35293 -27.91141 -26.97627 -25.08144 -22.57033 -21.81909 -20.15560 -19.62491 -18.81230 -18.21051 -17.35695 -16.54268 -16.37690 -15.93346 -15.75869 -15.30227 -15.27392 -14.81465 -14.68319 -14.32793 -14.05837 -13.77225 -13.72695 -13.52789 -13.30472 -13.19093 -13.00952 -12.89915 -12.79568 -12.59681 -12.49832 -12.38306 -11.99594 -11.79360 -11.69559 -11.28368 -10.76898 -10.73044 -10.56503 -10.47714 -9.70416 -9.57931 -8.21460 -6.31747 1.38697 1.40437 1.52155 1.61659 1.96945 2.40021 2.78191 3.12215 3.55016 3.68075 3.75132 3.84520 3.91452 4.03846 4.19230 4.21071 4.34669 4.38837 4.52937 4.55841 4.64811 4.75732 4.80064 4.81448 4.88104 4.92631 4.97310 5.05929 5.07102 5.09074 5.09564 5.22725 5.29501 5.46765 5.48649 5.59646 5.65337 5.80501 6.04557 6.21230 6.37326 6.46437 6.83655 7.19027 7.37433 8.89504 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035713 B = 0.003460 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.843636 B = 8091.144135 C = 8368.921295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.148 3.852 4 C -0.165 4.165 5 H 0.101 0.899 6 C -0.178 4.178 7 C -0.108 4.108 8 C -0.113 4.113 9 C -0.118 4.118 10 C 0.523 3.477 11 O -0.569 6.569 12 C 0.080 3.920 13 H 0.108 0.892 14 N -0.831 5.831 15 C -0.119 4.119 16 C 0.032 3.968 17 C -0.543 4.543 18 H 0.054 0.946 19 C 0.006 3.994 20 N -0.926 5.926 21 Si 0.959 3.041 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.281 1.281 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.343 0.657 39 H 0.352 0.648 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.003 0.997 43 H 0.001 0.999 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.561 20.314 -6.962 21.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.344 5.344 3 C 0.026 3.974 4 C -0.185 4.185 5 H 0.119 0.881 6 C -0.215 4.215 7 C -0.108 4.108 8 C -0.170 4.170 9 C -0.175 4.175 10 C 0.311 3.689 11 O -0.448 6.448 12 C -0.035 4.035 13 H 0.126 0.874 14 N -0.362 5.362 15 C -0.159 4.159 16 C -0.005 4.005 17 C -0.581 4.581 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.566 5.566 21 Si 0.784 3.216 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.207 1.207 25 H 0.083 0.917 26 H 0.118 0.882 27 H 0.092 0.908 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.156 0.844 39 H 0.167 0.833 40 H 0.059 0.941 41 H 0.085 0.915 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.164 20.616 -7.667 22.593 hybrid contribution -0.519 -1.364 1.646 2.200 sum 4.645 19.251 -6.021 20.699 Atomic orbital electron populations 1.22107 0.77514 1.04613 1.03082 1.47874 1.08154 1.05316 1.73024 1.21047 0.97196 0.84191 0.94947 1.22817 0.96581 1.01283 0.97771 0.88097 1.23247 0.94324 1.02258 1.01716 1.21744 1.02028 0.88351 0.98703 1.21376 1.01783 0.99452 0.94422 1.21399 1.01717 0.99464 0.94932 1.20757 0.87512 0.85996 0.74628 1.90599 1.15402 1.87797 1.50967 1.21457 0.95429 0.89762 0.96828 0.87439 1.58775 1.10889 1.09406 1.57154 1.22109 0.99279 0.99877 0.94613 1.18952 0.93768 0.92047 0.95750 1.21633 1.30778 1.10839 0.94871 0.92774 1.25861 0.96289 0.96060 1.01086 1.70066 1.37132 1.16648 1.32797 0.85487 0.78151 0.78077 0.79870 1.18995 1.20163 1.20656 0.91699 0.88198 0.90803 0.87794 0.91898 0.90153 0.89353 0.91392 0.90891 0.92849 0.93151 0.90805 0.91079 0.84448 0.83315 0.94093 0.91461 0.97825 0.98113 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.42 9.57 127.77 1.22 2.64 16 2 N -0.61 -16.19 2.87 -846.75 -2.43 -18.62 16 3 C 0.15 3.38 4.77 86.38 0.41 3.79 16 4 C -0.17 -3.49 5.73 -10.80 -0.06 -3.55 16 5 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 6 C -0.18 -3.99 9.47 30.62 0.29 -3.70 16 7 C -0.11 -1.82 2.70 -52.16 -0.14 -1.96 16 8 C -0.11 -1.51 9.85 71.98 0.71 -0.80 16 9 C -0.12 -1.67 8.86 71.98 0.64 -1.03 16 10 C 0.52 17.93 6.93 87.66 0.61 18.54 16 11 O -0.57 -23.04 15.83 -3.04 -0.05 -23.09 16 12 C 0.08 2.80 2.47 44.17 0.11 2.91 16 13 H 0.11 3.51 6.31 -2.39 -0.02 3.50 16 14 N -0.83 -29.97 8.94 -171.79 -1.54 -31.50 16 15 C -0.12 -4.73 4.71 30.60 0.14 -4.58 16 16 C 0.03 1.57 4.74 29.85 0.14 1.71 16 17 C -0.54 -29.82 9.11 25.60 0.23 -29.59 16 18 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 19 C 0.01 0.31 5.46 84.66 0.46 0.77 16 20 N -0.93 -54.19 13.29 21.45 0.28 -53.91 16 21 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 25 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 26 H 0.10 1.44 8.07 -2.39 -0.02 1.42 16 27 H 0.07 1.61 5.94 -2.39 -0.01 1.60 16 28 H 0.10 1.79 7.70 -2.39 -0.02 1.77 16 29 H 0.06 1.71 7.16 -2.39 -0.02 1.69 16 30 H 0.08 2.04 7.94 -2.39 -0.02 2.02 16 31 H 0.09 1.95 8.05 -2.39 -0.02 1.93 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.07 0.79 7.92 -2.39 -0.02 0.78 16 34 H 0.05 0.75 7.90 -2.39 -0.02 0.73 16 35 H 0.05 0.81 7.90 -2.39 -0.02 0.79 16 36 H 0.07 0.85 7.92 -2.39 -0.02 0.83 16 37 H 0.07 0.86 7.83 -2.39 -0.02 0.84 16 38 H 0.34 12.64 8.58 -89.69 -0.77 11.87 16 39 H 0.35 12.73 7.55 -89.69 -0.68 12.05 16 40 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.07 2.52 6.94 -2.39 -0.02 2.50 16 42 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.00 0.03 6.87 -2.39 -0.02 0.01 16 44 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -66.16 353.01 2.60 -63.56 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.46 Total: 33.11 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 4.77 Total: -14.85 kcal Atomic # 7 Polarization: -100.35 SS G_CDS: -3.68 Total: -104.03 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.05 Total: -23.09 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -66.16 2.60 -63.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595995080.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.368 kcal (2) G-P(sol) polarization free energy of solvation -66.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds