Wall clock time and date at job start Mon Mar 30 2020 01:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46809 * 2 1 4 4 C 1.50692 * 109.47072 * 239.99933 * 2 1 3 5 5 H 1.07998 * 120.00250 * 239.99800 * 4 2 1 6 6 C 1.37877 * 119.99822 * 60.00079 * 4 2 1 7 7 N 1.31518 * 120.00251 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00091 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47178 * 59.99842 * 8 6 4 10 10 H 1.48501 * 109.47356 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47237 * 299.99934 * 8 6 4 12 12 C 1.52999 * 109.47158 * 119.99897 * 2 1 3 13 13 N 1.46499 * 109.47209 * 300.00245 * 12 2 1 14 14 C 1.34778 * 119.99958 * 180.02562 * 13 12 2 15 15 O 1.21591 * 120.00119 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00161 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99955 * 185.03058 * 16 14 13 18 18 C 1.52997 * 115.54909 * 64.37418 * 17 16 14 19 19 C 1.53000 * 117.49385 * 210.04083 * 17 16 14 20 20 C 1.52997 * 117.49910 * 278.69878 * 17 16 14 21 21 C 1.53006 * 117.50063 * 359.97438 * 20 17 16 22 22 C 1.53000 * 117.49955 * 145.00248 * 20 17 16 23 23 H 1.09008 * 109.47168 * 299.99832 * 1 2 3 24 24 H 1.08994 * 109.47446 * 59.99789 * 1 2 3 25 25 H 1.09000 * 109.46918 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46877 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47289 * 300.00308 * 3 2 1 28 28 H 1.09000 * 109.46846 * 60.00329 * 3 2 1 29 29 H 0.97002 * 120.00183 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47311 * 180.02562 * 12 2 1 31 31 H 1.09000 * 109.47243 * 60.00154 * 12 2 1 32 32 H 0.96995 * 120.00202 * 359.97438 * 13 12 2 33 33 H 0.97002 * 119.99731 * 5.03506 * 16 14 13 34 34 H 1.08996 * 109.47655 * 54.10406 * 18 17 16 35 35 H 1.08999 * 109.47044 * 174.10648 * 18 17 16 36 36 H 1.09002 * 109.46548 * 294.10523 * 18 17 16 37 37 H 1.09004 * 117.49373 * 215.00390 * 19 17 16 38 38 H 1.08998 * 117.50206 * 359.97438 * 19 17 16 39 39 H 1.08996 * 109.46895 * 59.99826 * 21 20 17 40 40 H 1.09003 * 109.46902 * 180.02562 * 21 20 17 41 41 H 1.09006 * 109.47041 * 300.00153 * 21 20 17 42 42 H 1.09001 * 109.47388 * 59.99487 * 22 20 17 43 43 H 1.08995 * 109.47303 * 179.97438 * 22 20 17 44 44 H 1.09001 * 109.46830 * 299.99503 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4826 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1194 -4.0079 9 1 1.8280 -2.5197 -4.0082 10 1 1.8268 -0.4198 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5768 -1.4794 3.7811 16 7 1.4288 0.1448 4.7700 17 6 1.8718 -0.2880 6.0977 18 6 3.3659 -0.1212 6.3817 19 6 0.9039 -0.0869 7.2655 20 6 1.1645 -1.4933 6.7203 21 6 0.0483 -2.1542 5.9089 22 6 2.0055 -2.4398 7.5793 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 0.7086 1.1614 -3.4843 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 0.9943 0.7582 2.3565 33 1 0.8125 0.8887 4.6829 34 1 3.6584 0.9118 6.1939 35 1 3.5681 -0.3726 7.4228 36 1 3.9356 -0.7842 5.7305 37 1 1.3318 0.1641 8.2362 38 1 -0.0621 0.3676 7.0461 39 1 0.4514 -2.5141 4.9624 40 1 -0.3624 -2.9926 6.4717 41 1 -0.7397 -1.4264 5.7150 42 1 2.4289 -1.8888 8.4191 43 1 1.3755 -3.2461 7.9548 44 1 2.8111 -2.8585 6.9762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596624774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:14 Heat of formation + Delta-G solvation = -21.218752 kcal Electronic energy + Delta-G solvation = -21500.889058 eV Core-core repulsion = 18453.672447 eV Total energy + Delta-G solvation = -3047.216610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.11236 -38.28321 -36.21830 -33.35970 -32.82731 -30.77885 -29.80056 -28.01833 -26.82699 -25.69704 -25.53569 -24.73360 -21.34490 -20.62887 -18.84175 -18.30462 -17.97766 -15.92393 -15.77728 -15.20327 -14.73758 -14.48686 -14.28747 -13.85373 -13.64185 -13.08369 -12.95468 -12.80904 -12.53547 -12.32599 -12.19848 -12.14494 -12.03687 -11.84397 -11.36231 -11.16544 -11.12735 -10.82687 -10.70762 -10.36248 -10.19393 -10.11946 -9.90172 -9.59838 -9.54732 -9.26015 -8.77074 -8.69465 -8.38178 -8.12743 -5.99741 -4.09626 3.04349 3.31857 3.35918 3.40082 3.54624 3.79101 4.40183 4.53428 4.62671 4.72315 4.88377 5.07113 5.26930 5.47843 5.57221 5.63752 5.68682 5.74131 5.79662 5.89268 5.91800 6.01912 6.19829 6.24731 6.31765 6.37326 6.40380 6.54060 6.83081 6.84265 6.85688 6.95261 7.06242 7.15579 7.35664 7.46593 7.58696 7.72076 8.03802 8.15305 8.41288 8.56711 8.90209 9.14773 9.55956 11.01617 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037691 B = 0.003922 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.695980 B = 7137.556710 C = 7221.681857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.152 3.848 13 N -0.735 5.735 14 C 0.701 3.299 15 O -0.591 6.591 16 N -0.724 5.724 17 C 0.134 3.866 18 C -0.122 4.122 19 C -0.173 4.173 20 C -0.120 4.120 21 C -0.109 4.109 22 C -0.112 4.112 23 H 0.005 0.995 24 H 0.084 0.916 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.084 0.916 28 H 0.005 0.995 29 H 0.260 0.740 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.392 0.608 33 H 0.393 0.607 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 0.675 17.739 17.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.029 3.971 13 N -0.390 5.390 14 C 0.401 3.599 15 O -0.469 6.469 16 N -0.379 5.379 17 C 0.046 3.954 18 C -0.180 4.180 19 C -0.210 4.210 20 C -0.121 4.121 21 C -0.166 4.166 22 C -0.169 4.169 23 H 0.024 0.976 24 H 0.103 0.897 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.103 0.897 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.227 0.773 33 H 0.227 0.773 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.935 -0.126 17.624 17.649 hybrid contribution -0.329 0.379 -0.981 1.102 sum -1.264 0.253 16.643 16.693 Atomic orbital electron populations 1.21809 0.97808 0.99090 0.99934 1.18360 0.92772 0.92774 0.90596 1.21809 0.98536 0.98369 0.99940 1.20950 1.31449 1.12084 0.89895 0.92492 1.24875 0.94872 0.94929 0.98813 1.69798 1.36683 1.22778 1.23269 0.86637 0.79245 0.79795 0.82190 1.20290 1.21361 1.20281 1.21546 0.97777 0.95331 0.82407 1.45518 1.55843 1.32976 1.04614 1.16024 0.80562 0.82876 0.80404 1.90867 1.43027 1.27108 1.85890 1.44476 1.52070 1.37720 1.03622 1.20410 0.92576 1.01228 0.81211 1.21493 0.92757 1.02226 1.01536 1.23670 1.00287 0.99840 0.97252 1.21945 0.99909 0.89605 1.00692 1.21236 0.95871 0.99636 0.99872 1.21332 0.99300 0.98160 0.98114 0.97607 0.89698 0.95512 0.95501 0.89704 0.97584 0.92999 0.93069 0.93085 0.77348 0.77296 0.92368 0.91759 0.90680 0.88084 0.88621 0.91490 0.92655 0.92971 0.92632 0.92396 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.51 -13.34 8.01 -34.44 -0.28 -13.61 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.71 9.35 55.43 0.52 -23.20 16 8 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.15 3.31 4.50 -4.04 -0.02 3.29 16 13 N -0.74 -13.37 4.96 -65.23 -0.32 -13.70 16 14 C 0.70 12.54 7.85 -86.91 -0.68 11.86 16 15 O -0.59 -12.65 15.13 5.29 0.08 -12.57 16 16 N -0.72 -9.87 4.87 -52.42 -0.26 -10.12 16 17 C 0.13 1.66 2.25 -131.82 -0.30 1.36 16 18 C -0.12 -1.47 9.06 37.16 0.34 -1.13 16 19 C -0.17 -1.65 9.44 -26.69 -0.25 -1.90 16 20 C -0.12 -1.40 2.70 -154.47 -0.42 -1.82 16 21 C -0.11 -1.37 9.19 37.16 0.34 -1.03 16 22 C -0.11 -1.15 8.72 37.16 0.32 -0.83 16 23 H 0.00 0.10 6.86 -51.92 -0.36 -0.26 16 24 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 29 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.39 6.44 6.18 -40.82 -0.25 6.19 16 33 H 0.39 4.39 8.85 -40.82 -0.36 4.02 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.62 6.97 -51.93 -0.36 0.26 16 36 H 0.07 1.11 7.29 -51.93 -0.38 0.74 16 37 H 0.10 0.80 8.05 -51.93 -0.42 0.38 16 38 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 39 H 0.07 1.05 7.42 -51.93 -0.39 0.67 16 40 H 0.05 0.61 7.93 -51.93 -0.41 0.19 16 41 H 0.05 0.61 7.90 -51.93 -0.41 0.20 16 42 H 0.05 0.47 7.28 -51.93 -0.38 0.10 16 43 H 0.06 0.54 7.92 -51.93 -0.41 0.13 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -28.85 343.31 -7.95 -36.80 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -7.61 Total: 7.97 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -0.51 Total: -6.18 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.06 Total: -47.02 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: 0.08 Total: -12.57 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.85 -7.95 -36.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596624774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.580 kcal (2) G-P(sol) polarization free energy of solvation -28.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds