Wall clock time and date at job start Mon Mar 30 2020 01:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46809 * 2 1 4 4 C 1.50692 * 109.47072 * 239.99933 * 2 1 3 5 5 H 1.07998 * 120.00250 * 239.99800 * 4 2 1 6 6 C 1.37877 * 119.99822 * 60.00079 * 4 2 1 7 7 N 1.31518 * 120.00251 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00091 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47178 * 59.99842 * 8 6 4 10 10 H 1.48501 * 109.47356 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47237 * 299.99934 * 8 6 4 12 12 C 1.52999 * 109.47158 * 119.99897 * 2 1 3 13 13 N 1.46499 * 109.47209 * 300.00245 * 12 2 1 14 14 C 1.34778 * 119.99958 * 180.02562 * 13 12 2 15 15 O 1.21591 * 120.00119 * 359.97438 * 14 13 12 16 16 N 1.34780 * 120.00161 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99955 * 185.03058 * 16 14 13 18 18 C 1.52997 * 115.54909 * 64.37418 * 17 16 14 19 19 C 1.53000 * 117.49385 * 210.04083 * 17 16 14 20 20 C 1.52997 * 117.49910 * 278.69878 * 17 16 14 21 21 C 1.53006 * 117.50063 * 359.97438 * 20 17 16 22 22 C 1.53000 * 117.49955 * 145.00248 * 20 17 16 23 23 H 1.09008 * 109.47168 * 299.99832 * 1 2 3 24 24 H 1.08994 * 109.47446 * 59.99789 * 1 2 3 25 25 H 1.09000 * 109.46918 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46877 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47289 * 300.00308 * 3 2 1 28 28 H 1.09000 * 109.46846 * 60.00329 * 3 2 1 29 29 H 0.97002 * 120.00183 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47311 * 180.02562 * 12 2 1 31 31 H 1.09000 * 109.47243 * 60.00154 * 12 2 1 32 32 H 0.96995 * 120.00202 * 359.97438 * 13 12 2 33 33 H 0.97002 * 119.99731 * 5.03506 * 16 14 13 34 34 H 1.08996 * 109.47655 * 54.10406 * 18 17 16 35 35 H 1.08999 * 109.47044 * 174.10648 * 18 17 16 36 36 H 1.09002 * 109.46548 * 294.10523 * 18 17 16 37 37 H 1.09004 * 117.49373 * 215.00390 * 19 17 16 38 38 H 1.08998 * 117.50206 * 359.97438 * 19 17 16 39 39 H 1.08996 * 109.46895 * 59.99826 * 21 20 17 40 40 H 1.09003 * 109.46902 * 180.02562 * 21 20 17 41 41 H 1.09006 * 109.47041 * 300.00153 * 21 20 17 42 42 H 1.09001 * 109.47388 * 59.99487 * 22 20 17 43 43 H 1.08995 * 109.47303 * 179.97438 * 22 20 17 44 44 H 1.09001 * 109.46830 * 299.99503 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4826 7 7 0.9427 0.8297 -2.6033 8 14 2.3224 -1.1194 -4.0079 9 1 1.8280 -2.5197 -4.0082 10 1 1.8268 -0.4198 -5.2204 11 1 3.8074 -1.1189 -4.0078 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5768 -1.4794 3.7811 16 7 1.4288 0.1448 4.7700 17 6 1.8718 -0.2880 6.0977 18 6 3.3659 -0.1212 6.3817 19 6 0.9039 -0.0869 7.2655 20 6 1.1645 -1.4933 6.7203 21 6 0.0483 -2.1542 5.9089 22 6 2.0055 -2.4398 7.5793 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 0.7086 1.1614 -3.4843 30 1 3.1300 -0.7208 1.2495 31 1 1.6767 -1.7489 1.2493 32 1 0.9943 0.7582 2.3565 33 1 0.8125 0.8887 4.6829 34 1 3.6584 0.9118 6.1939 35 1 3.5681 -0.3726 7.4228 36 1 3.9356 -0.7842 5.7305 37 1 1.3318 0.1641 8.2362 38 1 -0.0621 0.3676 7.0461 39 1 0.4514 -2.5141 4.9624 40 1 -0.3624 -2.9926 6.4717 41 1 -0.7397 -1.4264 5.7150 42 1 2.4289 -1.8888 8.4191 43 1 1.3755 -3.2461 7.9548 44 1 2.8111 -2.8585 6.9762 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596624774.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:13 Heat of formation + Delta-G solvation = -38.634956 kcal Electronic energy + Delta-G solvation = -21501.644281 eV Core-core repulsion = 18453.672447 eV Total energy + Delta-G solvation = -3047.971834 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33360 -39.53022 -37.95345 -34.97882 -34.23178 -32.51504 -30.87025 -28.86331 -27.77199 -27.56045 -27.42297 -26.54437 -22.59283 -21.70898 -20.58229 -19.62014 -19.25017 -17.75257 -17.04367 -16.59790 -16.50334 -15.84620 -15.48290 -15.27193 -14.74959 -14.70874 -14.47772 -14.13224 -13.92852 -13.61984 -13.27490 -13.18899 -13.15129 -13.08239 -12.91399 -12.67223 -12.63167 -12.60081 -12.24765 -12.13018 -11.98783 -11.47941 -11.34470 -11.18468 -11.03054 -10.72204 -10.64515 -10.38897 -10.00842 -9.50470 -8.01629 -6.17300 1.44594 1.45396 1.52135 1.79044 2.27340 2.46711 2.76832 3.21856 3.38233 3.66835 3.82423 3.97261 4.21305 4.42348 4.53843 4.56686 4.71859 4.73458 4.80378 4.82642 4.88689 4.91560 5.00439 5.04660 5.06306 5.06638 5.09342 5.12169 5.20530 5.29337 5.34923 5.39874 5.45580 5.66556 5.67395 5.67610 5.77070 6.11799 6.15458 6.22585 6.44378 6.86541 7.23778 7.50291 7.74661 8.97148 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037691 B = 0.003922 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.695980 B = 7137.556710 C = 7221.681857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.051 3.949 3 C -0.117 4.117 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.172 3.828 13 N -0.729 5.729 14 C 0.700 3.300 15 O -0.630 6.630 16 N -0.706 5.706 17 C 0.103 3.897 18 C -0.117 4.117 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.105 4.105 22 C -0.110 4.110 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.016 0.984 26 H 0.016 0.984 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.260 0.740 30 H 0.032 0.968 31 H 0.032 0.968 32 H 0.403 0.597 33 H 0.408 0.592 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.128 0.872 38 H 0.110 0.890 39 H 0.026 0.974 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.402 1.762 19.861 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.051 3.949 3 C -0.175 4.175 4 C -0.568 4.568 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.047 3.953 13 N -0.385 5.385 14 C 0.401 3.599 15 O -0.510 6.510 16 N -0.361 5.361 17 C 0.015 3.985 18 C -0.175 4.175 19 C -0.171 4.171 20 C -0.140 4.140 21 C -0.163 4.163 22 C -0.167 4.167 23 H 0.055 0.945 24 H 0.081 0.919 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.240 0.760 33 H 0.245 0.755 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.056 0.944 37 H 0.146 0.854 38 H 0.128 0.872 39 H 0.045 0.955 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.838 1.003 19.781 19.892 hybrid contribution -0.065 0.025 -1.582 1.584 sum -1.903 1.027 18.199 18.327 Atomic orbital electron populations 1.21638 0.97075 0.98510 1.00285 1.18361 0.93281 0.93056 0.90231 1.21639 0.97792 0.97817 1.00283 1.21235 1.31799 1.12198 0.91609 0.93852 1.25440 0.95116 0.95593 1.00907 1.69900 1.36917 1.23263 1.23655 0.85826 0.78631 0.78817 0.79584 1.20297 1.20714 1.20277 1.21050 0.96440 0.94483 0.83310 1.45218 1.56141 1.33164 1.03979 1.16148 0.80215 0.82579 0.81001 1.90847 1.44775 1.28958 1.86468 1.44300 1.51375 1.37299 1.03135 1.20731 0.93456 1.03094 0.81239 1.21439 0.92274 1.01516 1.02265 1.23769 0.99776 0.96848 0.96668 1.22065 0.99855 0.90725 1.01308 1.21178 0.96327 1.00438 0.98311 1.21326 0.98631 0.98525 0.98198 0.94546 0.91896 0.96505 0.96485 0.91891 0.94552 0.93013 0.94965 0.95005 0.76043 0.75543 0.91972 0.89158 0.94408 0.85419 0.87171 0.95535 0.91331 0.92225 0.90366 0.91475 0.94051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.08 71.98 0.58 -4.70 16 2 C 0.05 2.42 0.50 -52.93 -0.03 2.40 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.53 -28.49 8.01 25.60 0.21 -28.29 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.56 5.15 84.65 0.44 1.99 16 7 N -0.90 -48.20 9.35 21.45 0.20 -48.00 16 8 Si 0.94 43.00 29.54 68.60 2.03 45.03 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.17 7.60 4.50 86.38 0.39 7.98 16 13 N -0.73 -26.17 4.96 -478.53 -2.37 -28.55 16 14 C 0.70 24.93 7.85 179.05 1.40 26.34 16 15 O -0.63 -27.74 15.13 -4.00 -0.06 -27.80 16 16 N -0.71 -18.12 4.87 -438.01 -2.13 -20.26 16 17 C 0.10 2.32 2.25 3.60 0.01 2.32 16 18 C -0.12 -2.65 9.06 71.98 0.65 -2.00 16 19 C -0.13 -1.98 9.44 30.62 0.29 -1.69 16 20 C -0.14 -2.93 2.70 -52.16 -0.14 -3.07 16 21 C -0.11 -2.53 9.19 71.98 0.66 -1.86 16 22 C -0.11 -2.06 8.72 71.98 0.63 -1.43 16 23 H 0.04 1.37 6.86 -2.38 -0.02 1.35 16 24 H 0.06 3.13 6.07 -2.39 -0.01 3.12 16 25 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 28 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 29 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 30 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.40 12.50 6.18 -92.71 -0.57 11.92 16 33 H 0.41 7.99 8.85 -92.71 -0.82 7.17 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.09 1.51 6.97 -2.39 -0.02 1.50 16 36 H 0.04 1.13 7.29 -2.39 -0.02 1.12 16 37 H 0.13 1.30 8.05 -2.38 -0.02 1.28 16 38 H 0.11 1.38 8.05 -2.39 -0.02 1.36 16 39 H 0.03 0.84 7.42 -2.39 -0.02 0.82 16 40 H 0.07 1.41 7.93 -2.39 -0.02 1.39 16 41 H 0.06 1.29 7.90 -2.38 -0.02 1.27 16 42 H 0.08 1.08 7.28 -2.39 -0.02 1.06 16 43 H 0.07 1.11 7.92 -2.39 -0.02 1.09 16 44 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -63.97 343.31 2.92 -61.06 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: -0.41 Total: 25.24 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 5.67 Total: -6.72 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -4.31 Total: -96.80 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.06 Total: -27.80 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -63.97 2.92 -61.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596624774.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.420 kcal (2) G-P(sol) polarization free energy of solvation -63.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds