Wall clock time and date at job start Mon Mar 30 2020 01:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99558 * 2 1 4 4 H 1.48503 * 109.47278 * 239.99669 * 3 2 1 5 5 H 1.48505 * 109.47457 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47415 * 119.99787 * 3 2 1 7 7 C 1.37874 * 120.00473 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47368 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47414 * 179.97438 * 10 9 7 12 12 C 1.46850 * 111.00333 * 170.00269 * 11 10 9 13 13 C 1.53036 * 109.52384 * 174.16360 * 12 11 10 14 14 C 1.53120 * 109.27700 * 59.18090 * 13 12 11 15 15 N 1.46902 * 109.51794 * 182.43956 * 14 13 12 16 16 C 1.47016 * 111.00171 * 303.63078 * 15 14 13 17 17 C 1.53097 * 109.25896 * 177.60681 * 16 15 14 18 18 O 1.43021 * 109.25638 * 56.85031 * 17 16 15 19 19 C 1.43018 * 113.73847 * 301.33018 * 18 17 16 20 20 C 1.47019 * 110.99599 * 179.97438 * 15 14 13 21 21 C 1.53120 * 109.15972 * 302.34018 * 14 13 12 22 22 C 1.46850 * 110.99945 * 45.79200 * 11 10 9 23 23 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47262 * 59.99612 * 9 7 2 25 25 H 1.08998 * 109.46706 * 299.99777 * 9 7 2 26 26 H 1.09001 * 109.46815 * 59.99866 * 10 9 7 27 27 H 1.09002 * 109.47193 * 300.00273 * 10 9 7 28 28 H 1.08995 * 109.45831 * 54.14149 * 12 11 10 29 29 H 1.08998 * 109.45719 * 294.17998 * 12 11 10 30 30 H 1.08998 * 109.49982 * 179.12006 * 13 12 11 31 31 H 1.08992 * 109.50379 * 299.23548 * 13 12 11 32 32 H 1.08996 * 109.52458 * 62.25353 * 14 13 12 33 33 H 1.08999 * 109.50377 * 297.54568 * 16 15 14 34 34 H 1.08995 * 109.50303 * 57.67713 * 16 15 14 35 35 H 1.08996 * 109.50793 * 296.92095 * 17 16 15 36 36 H 1.08994 * 109.54218 * 176.80209 * 17 16 15 37 37 H 1.09000 * 109.50371 * 298.73224 * 19 18 17 38 38 H 1.08998 * 109.53893 * 178.62652 * 19 18 17 39 39 H 1.08997 * 109.50615 * 302.32149 * 20 15 14 40 40 H 1.08996 * 109.50912 * 62.41529 * 20 15 14 41 41 H 1.09000 * 109.49976 * 177.59581 * 21 14 13 42 42 H 1.08997 * 109.50809 * 297.71813 * 21 14 13 43 43 H 1.09007 * 109.46080 * 65.82377 * 22 11 10 44 44 H 1.09001 * 109.46443 * 305.85821 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5111 -4.9342 0.0012 12 6 2.4172 -6.0651 -0.2368 13 6 1.6465 -7.3785 -0.0853 14 6 0.4914 -7.4057 -1.0901 15 7 -0.2871 -8.6383 -0.9098 16 6 0.5695 -9.8261 -1.0389 17 6 -0.2679 -11.0825 -0.7853 18 8 -1.3691 -11.1074 -1.6976 19 6 -2.2246 -9.9656 -1.5986 20 6 -1.4074 -8.6976 -1.8600 21 6 -0.4105 -6.1914 -0.8519 22 6 0.4198 -4.9123 -0.9812 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6243 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8905 27 1 2.8722 -3.6042 -0.8894 28 1 3.2317 -6.0362 0.4869 29 1 2.8251 -5.9975 -1.2453 30 1 2.3157 -8.2172 -0.2774 31 1 1.2500 -7.4531 0.9272 32 1 0.8897 -7.3704 -2.1041 33 1 0.9888 -9.8649 -2.0442 34 1 1.3770 -9.7736 -0.3087 35 1 -0.6432 -11.0694 0.2379 36 1 0.3492 -11.9683 -0.9355 37 1 -2.6567 -9.9201 -0.5990 38 1 -3.0227 -10.0429 -2.3370 39 1 -2.0425 -7.8215 -1.7290 40 1 -1.0200 -8.7174 -2.8786 41 1 -1.2109 -6.1820 -1.5918 42 1 -0.8394 -6.2472 0.1485 43 1 0.8371 -4.8503 -1.9863 44 1 -0.2164 -4.0464 -0.7982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599472559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:53 Heat of formation + Delta-G solvation = -40.782716 kcal Electronic energy + Delta-G solvation = -21234.150388 eV Core-core repulsion = 18186.085421 eV Total energy + Delta-G solvation = -3048.064967 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.09024 -38.46341 -35.98324 -33.41242 -31.89323 -31.72150 -30.45745 -28.99182 -26.84776 -24.60160 -24.40165 -22.75999 -22.16631 -20.70999 -19.97135 -19.33936 -17.04327 -16.42600 -16.26922 -15.42669 -15.13296 -15.10041 -14.72025 -14.61850 -14.40464 -14.15489 -13.83695 -13.16995 -13.02024 -12.66852 -12.60709 -12.22472 -11.87790 -11.61498 -11.49268 -11.20345 -11.11664 -10.92287 -10.89223 -10.61221 -10.57319 -10.36982 -10.14381 -9.86886 -9.81898 -9.30033 -9.08303 -8.50330 -8.34762 -7.68402 -6.01145 -4.03498 3.32671 3.37071 3.39459 3.53259 3.70218 4.38013 4.53855 4.63204 4.74304 4.79425 4.94275 4.97052 5.10066 5.15309 5.28501 5.32171 5.34768 5.39888 5.47841 5.54281 5.60675 5.63612 5.73409 5.77672 5.83787 5.93821 5.96177 6.11689 6.29482 6.32413 6.38766 6.53145 6.61512 6.82544 6.92219 6.94197 6.95056 7.51684 7.61941 7.79351 7.85151 8.04379 8.42139 9.02891 9.60182 11.10185 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047206 B = 0.003328 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.999214 B = 8412.188742 C = 8871.250883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.021 3.979 10 C 0.062 3.938 11 N -0.538 5.538 12 C 0.057 3.943 13 C -0.107 4.107 14 C 0.086 3.914 15 N -0.531 5.531 16 C 0.014 3.986 17 C 0.064 3.936 18 O -0.389 6.389 19 C 0.064 3.936 20 C 0.014 3.986 21 C -0.107 4.107 22 C 0.053 3.947 23 H 0.261 0.739 24 H 0.020 0.980 25 H 0.025 0.975 26 H 0.062 0.938 27 H 0.018 0.982 28 H 0.072 0.928 29 H 0.024 0.976 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.035 0.965 33 H 0.039 0.961 34 H 0.090 0.910 35 H 0.059 0.941 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.040 0.960 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.023 0.977 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.236 -20.538 -2.853 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.064 4.064 11 N -0.263 5.263 12 C -0.072 4.072 13 C -0.145 4.145 14 C -0.021 4.021 15 N -0.256 5.256 16 C -0.114 4.114 17 C -0.013 4.013 18 O -0.308 6.308 19 C -0.013 4.013 20 C -0.114 4.114 21 C -0.145 4.145 22 C -0.076 4.076 23 H 0.071 0.929 24 H 0.038 0.962 25 H 0.044 0.956 26 H 0.081 0.919 27 H 0.037 0.963 28 H 0.091 0.909 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.108 0.892 35 H 0.078 0.922 36 H 0.113 0.887 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.042 0.958 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.825 -20.630 -2.048 20.812 hybrid contribution 1.306 1.347 -1.514 2.411 sum -0.519 -19.283 -3.562 19.617 Atomic orbital electron populations 1.69950 1.06013 1.26737 1.50589 1.24989 0.94848 0.99186 0.95265 0.86649 0.79576 0.83110 0.78601 1.20324 1.21261 1.20195 1.21152 0.92978 0.91042 1.50980 0.92822 1.19238 0.94106 0.90488 0.97760 1.22312 0.97022 0.88168 0.98938 1.62057 1.11516 1.03500 1.49186 1.22024 0.95176 0.90969 0.99068 1.21671 0.95837 0.96564 1.00441 1.21744 0.93946 0.89106 0.97341 1.62276 1.10422 1.01862 1.51035 1.22830 0.96607 0.90973 1.01015 1.22663 0.87939 0.97127 0.93543 1.87963 1.39455 1.42845 1.60525 1.22671 0.92226 0.84297 1.02069 1.22832 0.94484 0.99729 0.94367 1.21695 0.97262 0.92729 1.02858 1.22180 0.94216 0.98189 0.92987 0.92916 0.96204 0.95633 0.91916 0.96344 0.90925 0.95792 0.92219 0.90162 0.94655 0.94281 0.89171 0.92233 0.88692 0.92183 0.88589 0.88992 0.94214 0.92080 0.90192 0.95837 0.88454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.55 4.22 -27.88 -0.12 0.43 16 10 C 0.06 1.33 5.21 -3.83 -0.02 1.31 16 11 N -0.54 -9.83 4.81 -234.67 -1.13 -10.96 16 12 C 0.06 0.85 5.42 -3.83 -0.02 0.83 16 13 C -0.11 -1.36 4.94 -26.65 -0.13 -1.49 16 14 C 0.09 1.10 2.00 -67.59 -0.14 0.97 16 15 N -0.53 -6.09 4.59 -226.18 -1.04 -7.13 16 16 C 0.01 0.14 5.25 -3.71 -0.02 0.12 16 17 C 0.06 0.59 7.01 37.21 0.26 0.85 16 18 O -0.39 -4.29 10.83 -35.23 -0.38 -4.67 16 19 C 0.06 0.61 7.01 37.21 0.26 0.87 16 20 C 0.01 0.15 5.34 -3.71 -0.02 0.13 16 21 C -0.11 -1.53 5.08 -26.65 -0.14 -1.66 16 22 C 0.05 0.92 4.85 -3.83 -0.02 0.90 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.02 0.53 6.21 -51.93 -0.32 0.21 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 27 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 28 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 29 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.64 6.45 -51.93 -0.34 0.31 16 31 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.82 6.17 -51.93 -0.32 0.50 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.09 0.93 6.25 -51.93 -0.32 0.60 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.79 6.50 -51.93 -0.34 0.45 16 42 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.41 8.14 -51.92 -0.42 -0.01 16 44 H 0.10 1.94 5.81 -51.93 -0.30 1.64 16 LS Contribution 330.78 15.07 4.98 4.98 Total: -1.00 -30.27 330.78 -10.18 -40.44 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -7.82 Total: -3.00 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.51 Total: -10.30 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: -1.43 Total: -44.09 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: -0.38 Total: -4.67 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.27 -10.18 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599472559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.339 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds