Wall clock time and date at job start Mon Mar 30 2020 01:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99558 * 2 1 4 4 H 1.48503 * 109.47278 * 239.99669 * 3 2 1 5 5 H 1.48505 * 109.47457 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47415 * 119.99787 * 3 2 1 7 7 C 1.37874 * 120.00473 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00208 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99947 * 0.02562 * 7 2 1 10 10 C 1.52995 * 109.47368 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47414 * 179.97438 * 10 9 7 12 12 C 1.46850 * 111.00333 * 170.00269 * 11 10 9 13 13 C 1.53036 * 109.52384 * 174.16360 * 12 11 10 14 14 C 1.53120 * 109.27700 * 59.18090 * 13 12 11 15 15 N 1.46902 * 109.51794 * 182.43956 * 14 13 12 16 16 C 1.47016 * 111.00171 * 303.63078 * 15 14 13 17 17 C 1.53097 * 109.25896 * 177.60681 * 16 15 14 18 18 O 1.43021 * 109.25638 * 56.85031 * 17 16 15 19 19 C 1.43018 * 113.73847 * 301.33018 * 18 17 16 20 20 C 1.47019 * 110.99599 * 179.97438 * 15 14 13 21 21 C 1.53120 * 109.15972 * 302.34018 * 14 13 12 22 22 C 1.46850 * 110.99945 * 45.79200 * 11 10 9 23 23 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.47262 * 59.99612 * 9 7 2 25 25 H 1.08998 * 109.46706 * 299.99777 * 9 7 2 26 26 H 1.09001 * 109.46815 * 59.99866 * 10 9 7 27 27 H 1.09002 * 109.47193 * 300.00273 * 10 9 7 28 28 H 1.08995 * 109.45831 * 54.14149 * 12 11 10 29 29 H 1.08998 * 109.45719 * 294.17998 * 12 11 10 30 30 H 1.08998 * 109.49982 * 179.12006 * 13 12 11 31 31 H 1.08992 * 109.50379 * 299.23548 * 13 12 11 32 32 H 1.08996 * 109.52458 * 62.25353 * 14 13 12 33 33 H 1.08999 * 109.50377 * 297.54568 * 16 15 14 34 34 H 1.08995 * 109.50303 * 57.67713 * 16 15 14 35 35 H 1.08996 * 109.50793 * 296.92095 * 17 16 15 36 36 H 1.08994 * 109.54218 * 176.80209 * 17 16 15 37 37 H 1.09000 * 109.50371 * 298.73224 * 19 18 17 38 38 H 1.08998 * 109.53893 * 178.62652 * 19 18 17 39 39 H 1.08997 * 109.50615 * 302.32149 * 20 15 14 40 40 H 1.08996 * 109.50912 * 62.41529 * 20 15 14 41 41 H 1.09000 * 109.49976 * 177.59581 * 21 14 13 42 42 H 1.08997 * 109.50809 * 297.71813 * 21 14 13 43 43 H 1.09007 * 109.46080 * 65.82377 * 22 11 10 44 44 H 1.09001 * 109.46443 * 305.85821 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5111 -4.9342 0.0012 12 6 2.4172 -6.0651 -0.2368 13 6 1.6465 -7.3785 -0.0853 14 6 0.4914 -7.4057 -1.0901 15 7 -0.2871 -8.6383 -0.9098 16 6 0.5695 -9.8261 -1.0389 17 6 -0.2679 -11.0825 -0.7853 18 8 -1.3691 -11.1074 -1.6976 19 6 -2.2246 -9.9656 -1.5986 20 6 -1.4074 -8.6976 -1.8600 21 6 -0.4105 -6.1914 -0.8519 22 6 0.4198 -4.9123 -0.9812 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6243 -2.5567 0.8903 26 1 2.8721 -3.6042 0.8905 27 1 2.8722 -3.6042 -0.8894 28 1 3.2317 -6.0362 0.4869 29 1 2.8251 -5.9975 -1.2453 30 1 2.3157 -8.2172 -0.2774 31 1 1.2500 -7.4531 0.9272 32 1 0.8897 -7.3704 -2.1041 33 1 0.9888 -9.8649 -2.0442 34 1 1.3770 -9.7736 -0.3087 35 1 -0.6432 -11.0694 0.2379 36 1 0.3492 -11.9683 -0.9355 37 1 -2.6567 -9.9201 -0.5990 38 1 -3.0227 -10.0429 -2.3370 39 1 -2.0425 -7.8215 -1.7290 40 1 -1.0200 -8.7174 -2.8786 41 1 -1.2109 -6.1820 -1.5918 42 1 -0.8394 -6.2472 0.1485 43 1 0.8371 -4.8503 -1.9863 44 1 -0.2164 -4.0464 -0.7982 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599472559.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:52 Heat of formation + Delta-G solvation = -62.152801 kcal Electronic energy + Delta-G solvation = -21235.077064 eV Core-core repulsion = 18186.085421 eV Total energy + Delta-G solvation = -3048.991644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04180 -39.61917 -37.12902 -35.29568 -33.43029 -32.62137 -31.57662 -30.65873 -27.97847 -26.17473 -25.52840 -24.15185 -23.31401 -21.88476 -21.23417 -20.64140 -18.66297 -17.81032 -17.04465 -16.58077 -16.55256 -16.17648 -15.98002 -15.88701 -15.68660 -15.25860 -15.18559 -14.50501 -14.27649 -14.16024 -13.96452 -13.55712 -13.14766 -12.88173 -12.85820 -12.53241 -12.44889 -12.35700 -12.29870 -12.13818 -11.87256 -11.67305 -11.44394 -11.37026 -11.22409 -10.94636 -10.62990 -10.53275 -9.39613 -9.18636 -8.20888 -6.32266 1.39618 1.42704 1.50635 2.39653 2.66661 2.97549 3.06660 3.12349 3.67167 3.83137 3.94129 4.04012 4.12893 4.20128 4.23718 4.26636 4.34303 4.41653 4.43735 4.49484 4.59511 4.64048 4.68606 4.71496 4.72966 4.81505 4.91607 4.92338 4.98438 5.03380 5.04174 5.11086 5.19414 5.35599 5.44642 5.65591 5.77565 5.97605 6.00114 6.08108 6.19107 6.31731 6.33733 6.84018 7.36696 8.90809 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.047206 B = 0.003328 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.999214 B = 8412.188742 C = 8871.250883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.031 3.969 10 C 0.077 3.923 11 N -0.546 5.546 12 C 0.055 3.945 13 C -0.098 4.098 14 C 0.093 3.907 15 N -0.536 5.536 16 C 0.014 3.986 17 C 0.063 3.937 18 O -0.406 6.406 19 C 0.065 3.935 20 C 0.013 3.987 21 C -0.097 4.097 22 C 0.057 3.943 23 H 0.264 0.736 24 H 0.000 1.000 25 H -0.007 1.007 26 H 0.065 0.935 27 H 0.018 0.982 28 H 0.083 0.917 29 H 0.026 0.974 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.031 0.969 33 H 0.035 0.965 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.020 0.980 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -21.715 -2.965 21.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.050 4.050 11 N -0.271 5.271 12 C -0.073 4.073 13 C -0.136 4.136 14 C -0.015 4.015 15 N -0.262 5.262 16 C -0.114 4.114 17 C -0.014 4.014 18 O -0.325 6.325 19 C -0.011 4.011 20 C -0.115 4.115 21 C -0.135 4.135 22 C -0.072 4.072 23 H 0.073 0.927 24 H 0.019 0.981 25 H 0.012 0.988 26 H 0.083 0.917 27 H 0.036 0.964 28 H 0.101 0.899 29 H 0.044 0.956 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.120 0.880 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.131 0.869 39 H 0.110 0.890 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.038 0.962 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.721 -21.835 -2.159 21.953 hybrid contribution 0.925 1.671 -1.482 2.418 sum 0.204 -20.164 -3.641 20.491 Atomic orbital electron populations 1.70091 1.07761 1.27872 1.51294 1.25951 0.95773 1.03281 0.94587 0.85494 0.78276 0.78048 0.79176 1.19232 1.20760 1.19128 1.21604 0.93531 0.92337 1.51105 0.92244 1.19051 0.94280 0.92080 0.95231 1.21983 0.95781 0.88284 0.98962 1.62031 1.12102 1.03188 1.49781 1.22144 0.95150 0.90514 0.99493 1.21607 0.95964 0.96011 0.99992 1.21583 0.93670 0.89107 0.97121 1.62265 1.10709 1.01787 1.51407 1.22905 0.96811 0.90530 1.01138 1.22801 0.87663 0.97529 0.93363 1.87946 1.40070 1.43349 1.61135 1.22746 0.92241 0.83379 1.02760 1.22873 0.94328 1.00438 0.93857 1.21568 0.97313 0.91916 1.02704 1.22072 0.93907 0.98715 0.92506 0.92718 0.98135 0.98843 0.91696 0.96352 0.89888 0.95566 0.89456 0.90750 0.95070 0.94680 0.88012 0.92021 0.86643 0.92030 0.86930 0.88957 0.94746 0.90844 0.91139 0.96222 0.91918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.44 29.54 68.60 2.03 46.47 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -31.55 9.11 25.60 0.23 -31.32 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.03 1.66 4.22 29.85 0.13 1.78 16 10 C 0.08 3.34 5.21 86.30 0.45 3.79 16 11 N -0.55 -20.08 4.81 -896.37 -4.31 -24.39 16 12 C 0.06 1.57 5.42 86.32 0.47 2.04 16 13 C -0.10 -2.27 4.94 30.65 0.15 -2.12 16 14 C 0.09 2.25 2.00 45.00 0.09 2.34 16 15 N -0.54 -11.34 4.59 -869.50 -4.00 -15.34 16 16 C 0.01 0.24 5.25 86.31 0.45 0.70 16 17 C 0.06 1.00 7.01 72.01 0.50 1.51 16 18 O -0.41 -8.14 10.83 -148.98 -1.61 -9.75 16 19 C 0.07 1.13 7.01 72.02 0.50 1.63 16 20 C 0.01 0.26 5.34 86.31 0.46 0.72 16 21 C -0.10 -2.74 5.08 30.65 0.16 -2.59 16 22 C 0.06 2.03 4.85 86.32 0.42 2.45 16 23 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 24 H 0.00 0.02 6.21 -2.39 -0.01 0.01 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 28 H 0.08 2.20 8.12 -2.39 -0.02 2.18 16 29 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.09 1.58 6.45 -2.39 -0.02 1.57 16 31 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 1.52 6.17 -2.39 -0.01 1.51 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.09 1.76 6.25 -2.39 -0.01 1.75 16 40 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.07 1.88 6.50 -2.39 -0.02 1.86 16 42 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 44 H 0.06 2.67 5.81 -2.39 -0.01 2.66 16 Total: -1.00 -65.55 330.78 -2.18 -67.73 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.95 Total: 10.40 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 4.48 Total: -18.47 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -8.02 Total: -96.37 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -1.61 Total: -9.75 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -65.55 -2.18 -67.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599472559.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.578 kcal (2) G-P(sol) polarization free energy of solvation -65.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds