Wall clock time and date at job start Mon Mar 30 2020 01:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.50253 * 2 1 4 4 C 1.53117 * 109.50033 * 120.07909 * 2 1 3 5 5 C 1.53119 * 109.16328 * 62.28635 * 4 2 1 6 6 C 1.53031 * 109.27863 * 57.65370 * 5 4 2 7 7 C 1.52997 * 109.46606 * 60.83414 * 6 5 4 8 8 C 1.53003 * 109.46131 * 180.80569 * 6 5 4 9 9 N 1.46848 * 109.52130 * 300.82018 * 6 5 4 10 10 C 1.46910 * 111.00089 * 185.83995 * 9 6 5 11 11 C 1.50694 * 109.47330 * 180.64361 * 10 9 6 12 12 O 1.21297 * 119.99868 * 352.35963 * 11 10 9 13 13 N 1.34771 * 120.00017 * 172.35898 * 11 10 9 14 14 C 1.37099 * 120.00354 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99630 * 359.97438 * 14 13 11 16 16 C 1.38948 * 120.00424 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99959 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99756 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46986 * 90.00312 * 18 16 14 20 20 H 1.48500 * 109.47042 * 210.00276 * 18 16 14 21 21 H 1.48499 * 109.47380 * 330.00182 * 18 16 14 22 22 C 1.46844 * 111.19838 * 61.74648 * 9 6 5 23 23 H 1.08999 * 109.46690 * 299.92481 * 1 2 3 24 24 H 1.08998 * 109.47281 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46949 * 59.91926 * 1 2 3 26 26 H 1.08999 * 109.47224 * 59.99831 * 3 2 1 27 27 H 1.09000 * 109.47066 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47029 * 299.99651 * 3 2 1 29 29 H 1.09002 * 109.51812 * 182.19417 * 4 2 1 30 30 H 1.09002 * 109.52121 * 302.31524 * 4 2 1 31 31 H 1.08998 * 109.49855 * 177.59763 * 5 4 2 32 32 H 1.09004 * 109.49917 * 297.67035 * 5 4 2 33 33 H 1.09009 * 109.46824 * 60.00271 * 7 6 5 34 34 H 1.08991 * 109.47460 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47251 * 300.00237 * 7 6 5 36 36 H 1.09001 * 109.47104 * 60.00093 * 8 6 5 37 37 H 1.09007 * 109.46762 * 179.97438 * 8 6 5 38 38 H 1.08997 * 109.47130 * 300.00000 * 8 6 5 39 39 H 1.08997 * 109.47046 * 300.64935 * 10 9 6 40 40 H 1.08999 * 109.46967 * 60.64336 * 10 9 6 41 41 H 0.97003 * 120.00054 * 359.97438 * 13 11 10 42 42 H 0.97008 * 119.99675 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.46045 * 178.24380 * 22 9 6 44 44 H 1.08998 * 109.46754 * 58.27151 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 1.5750 -2.1814 1.2115 6 6 2.0846 -2.8420 -0.0713 7 6 3.6141 -2.8106 -0.0881 8 6 1.6041 -4.2937 -0.1227 9 7 1.5675 -2.1139 -1.2371 10 6 1.9223 -2.8005 -2.4865 11 6 1.3896 -2.0175 -3.6587 12 8 0.6592 -1.0673 -3.4717 13 7 1.7249 -2.3729 -4.9147 14 6 1.2408 -1.6603 -5.9812 15 1 0.5903 -0.8142 -5.8147 16 6 1.5860 -2.0270 -7.2762 17 7 1.1215 -1.3442 -8.2983 18 14 2.7103 -3.4907 -7.5640 19 1 1.8934 -4.7235 -7.6982 20 1 3.4922 -3.2771 -8.8083 21 1 3.6392 -3.6351 -6.4144 22 6 2.0410 -0.7239 -1.2478 23 1 -0.3633 0.5127 0.8907 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5151 -0.8893 26 1 1.6778 1.9563 0.8900 27 1 3.1309 1.4416 -0.0005 28 1 1.6779 1.9562 -0.8900 29 1 3.1305 -0.6897 1.2692 30 1 1.6451 -0.2360 2.1399 31 1 1.9715 -2.7125 2.0768 32 1 0.4856 -2.2157 1.2313 33 1 3.9981 -3.3519 0.7767 34 1 3.9773 -3.2815 -1.0015 35 1 3.9568 -1.7766 -0.0510 36 1 0.5144 -4.3164 -0.1104 37 1 1.9666 -4.7643 -1.0367 38 1 1.9885 -4.8345 0.7420 39 1 3.0068 -2.8774 -2.5635 40 1 1.4862 -3.7994 -2.4885 41 1 2.3093 -3.1325 -5.0642 42 1 1.3622 -1.6005 -9.2024 43 1 1.6669 -0.2197 -2.1389 44 1 3.1309 -0.7115 -1.2541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599538704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:58 Heat of formation + Delta-G solvation = -33.927184 kcal Electronic energy + Delta-G solvation = -22392.219780 eV Core-core repulsion = 19344.452091 eV Total energy + Delta-G solvation = -3047.767689 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.41608 -38.06954 -35.50433 -34.08812 -32.57125 -31.64938 -29.10450 -27.99222 -27.34733 -26.58753 -24.75777 -24.03568 -22.76717 -19.80727 -19.25148 -18.22896 -17.34460 -16.27872 -15.39265 -15.08766 -14.95527 -14.57593 -14.30874 -13.97543 -13.85583 -13.55854 -13.15737 -12.89815 -12.55345 -12.43303 -12.18614 -11.97047 -11.96566 -11.76324 -11.54369 -11.50322 -11.39341 -11.28641 -10.95045 -10.88985 -10.58969 -10.48421 -10.16082 -10.04074 -9.96225 -9.84448 -9.43340 -8.37335 -8.14626 -7.73980 -6.30145 -3.81006 3.03093 3.07426 3.15505 3.75680 4.00899 4.11313 4.71523 4.77024 4.92925 4.99117 5.09247 5.22885 5.28721 5.36775 5.50186 5.55911 5.60463 5.65215 5.74867 5.75044 5.87428 5.87648 5.91705 5.93318 5.98746 6.01614 6.04433 6.08723 6.18492 6.24324 6.26317 6.32495 6.41886 6.52993 6.56718 6.81624 6.90115 7.40013 7.56163 7.62907 8.17133 8.62012 8.96936 9.44285 9.85900 10.83021 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.005583 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.163886 B = 5013.971370 C = 5657.181329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.057 4.057 3 C -0.140 4.140 4 C -0.111 4.111 5 C -0.102 4.102 6 C 0.104 3.896 7 C -0.184 4.184 8 C -0.142 4.142 9 N -0.498 5.498 10 C 0.038 3.962 11 C 0.451 3.549 12 O -0.556 6.556 13 N -0.591 5.591 14 C -0.303 4.303 15 H 0.120 0.880 16 C 0.042 3.958 17 N -0.882 5.882 18 Si 0.878 3.122 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.270 1.270 22 C 0.047 3.953 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.048 0.952 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.370 0.630 42 H 0.273 0.727 43 H 0.118 0.882 44 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 -3.905 17.970 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.057 4.057 3 C -0.198 4.198 4 C -0.149 4.149 5 C -0.140 4.140 6 C 0.014 3.986 7 C -0.243 4.243 8 C -0.200 4.200 9 N -0.222 5.222 10 C -0.093 4.093 11 C 0.237 3.763 12 O -0.438 6.438 13 N -0.230 5.230 14 C -0.432 4.432 15 H 0.138 0.862 16 C -0.161 4.161 17 N -0.522 5.522 18 Si 0.705 3.295 19 H -0.196 1.196 20 H -0.202 1.202 21 H -0.196 1.196 22 C -0.080 4.080 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.111 0.889 41 H 0.202 0.798 42 H 0.083 0.917 43 H 0.135 0.865 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 3.982 -3.219 17.880 18.599 hybrid contribution 1.938 -1.255 -0.559 2.376 sum 5.920 -4.474 17.321 18.844 Atomic orbital electron populations 1.21711 0.93760 1.02593 1.00319 1.20504 0.96775 0.94177 0.94290 1.21821 1.00318 0.95892 1.01723 1.21711 1.00075 0.95466 0.97646 1.21595 1.01696 0.95282 0.95418 1.21068 0.91939 0.93883 0.91690 1.22536 0.97633 1.02319 1.01764 1.21935 1.02118 0.94523 1.01418 1.61790 1.58855 1.01803 0.99727 1.21975 0.98479 0.98769 0.90094 1.19699 0.85769 0.87449 0.83336 1.90473 1.39102 1.29954 1.84267 1.42239 1.45252 1.29616 1.05934 1.19427 1.28019 1.12637 0.83111 0.86247 1.25025 0.97908 0.97937 0.95256 1.69623 1.44277 1.39534 0.98765 0.86692 0.81043 0.83162 0.78620 1.19601 1.20219 1.19578 1.22614 0.96117 0.88757 1.00557 0.94518 0.91398 0.92430 0.92964 0.93317 0.92246 0.92462 0.92384 0.92221 0.90822 0.92506 0.92645 0.91882 0.91682 0.92461 0.92603 0.93697 0.88910 0.79782 0.91656 0.86451 0.96055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.03 37.16 0.30 -1.56 16 2 C -0.06 -0.79 0.77 -154.42 -0.12 -0.91 16 3 C -0.14 -1.78 8.48 37.16 0.32 -1.46 16 4 C -0.11 -1.30 4.48 -26.61 -0.12 -1.42 16 5 C -0.10 -1.17 4.54 -26.65 -0.12 -1.29 16 6 C 0.10 1.31 0.68 -131.61 -0.09 1.22 16 7 C -0.18 -2.15 7.46 37.16 0.28 -1.88 16 8 C -0.14 -1.61 8.05 37.16 0.30 -1.31 16 9 N -0.50 -7.94 3.60 -220.44 -0.79 -8.74 16 10 C 0.04 0.65 4.74 -4.97 -0.02 0.63 16 11 C 0.45 10.18 7.29 -10.99 -0.08 10.10 16 12 O -0.56 -14.43 13.43 5.54 0.07 -14.35 16 13 N -0.59 -14.08 5.09 -10.96 -0.06 -14.13 16 14 C -0.30 -8.54 10.16 -14.93 -0.15 -8.69 16 15 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 16 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 17 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 18 Si 0.88 19.46 27.74 -169.99 -4.71 14.75 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.27 -5.49 6.52 56.52 0.37 -5.12 16 22 C 0.05 0.77 3.45 -3.84 -0.01 0.76 16 23 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 1.06 6.01 -51.93 -0.31 0.75 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.90 6.58 -51.93 -0.34 0.55 16 33 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 34 H 0.05 0.67 6.53 -51.93 -0.34 0.33 16 35 H 0.06 0.78 4.80 -51.93 -0.25 0.53 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.65 6.34 -51.93 -0.33 0.32 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.71 6.43 -51.93 -0.33 0.38 16 40 H 0.09 1.44 6.25 -51.93 -0.32 1.11 16 41 H 0.37 7.81 5.76 -40.82 -0.24 7.58 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.12 2.44 5.09 -51.93 -0.26 2.17 16 44 H 0.02 0.35 6.19 -51.93 -0.32 0.02 16 LS Contribution 321.84 15.07 4.85 4.85 Total: -1.00 -30.31 321.84 -6.66 -36.97 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -7.17 Total: 10.43 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 0.38 Total: -4.77 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.08 Total: -47.89 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.07 Total: -14.35 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -30.31 -6.66 -36.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.048 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds