Wall clock time and date at job start Mon Mar 30 2020 01:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.50253 * 2 1 4 4 C 1.53117 * 109.50033 * 120.07909 * 2 1 3 5 5 C 1.53119 * 109.16328 * 62.28635 * 4 2 1 6 6 C 1.53031 * 109.27863 * 57.65370 * 5 4 2 7 7 C 1.52997 * 109.46606 * 60.83414 * 6 5 4 8 8 C 1.53003 * 109.46131 * 180.80569 * 6 5 4 9 9 N 1.46848 * 109.52130 * 300.82018 * 6 5 4 10 10 C 1.46910 * 111.00089 * 185.83995 * 9 6 5 11 11 C 1.50694 * 109.47330 * 180.64361 * 10 9 6 12 12 O 1.21297 * 119.99868 * 352.35963 * 11 10 9 13 13 N 1.34771 * 120.00017 * 172.35898 * 11 10 9 14 14 C 1.37099 * 120.00354 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99630 * 359.97438 * 14 13 11 16 16 C 1.38948 * 120.00424 * 180.02562 * 14 13 11 17 17 N 1.31408 * 119.99959 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99756 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.46986 * 90.00312 * 18 16 14 20 20 H 1.48500 * 109.47042 * 210.00276 * 18 16 14 21 21 H 1.48499 * 109.47380 * 330.00182 * 18 16 14 22 22 C 1.46844 * 111.19838 * 61.74648 * 9 6 5 23 23 H 1.08999 * 109.46690 * 299.92481 * 1 2 3 24 24 H 1.08998 * 109.47281 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46949 * 59.91926 * 1 2 3 26 26 H 1.08999 * 109.47224 * 59.99831 * 3 2 1 27 27 H 1.09000 * 109.47066 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47029 * 299.99651 * 3 2 1 29 29 H 1.09002 * 109.51812 * 182.19417 * 4 2 1 30 30 H 1.09002 * 109.52121 * 302.31524 * 4 2 1 31 31 H 1.08998 * 109.49855 * 177.59763 * 5 4 2 32 32 H 1.09004 * 109.49917 * 297.67035 * 5 4 2 33 33 H 1.09009 * 109.46824 * 60.00271 * 7 6 5 34 34 H 1.08991 * 109.47460 * 179.97438 * 7 6 5 35 35 H 1.08994 * 109.47251 * 300.00237 * 7 6 5 36 36 H 1.09001 * 109.47104 * 60.00093 * 8 6 5 37 37 H 1.09007 * 109.46762 * 179.97438 * 8 6 5 38 38 H 1.08997 * 109.47130 * 300.00000 * 8 6 5 39 39 H 1.08997 * 109.47046 * 300.64935 * 10 9 6 40 40 H 1.08999 * 109.46967 * 60.64336 * 10 9 6 41 41 H 0.97003 * 120.00054 * 359.97438 * 13 11 10 42 42 H 0.97008 * 119.99675 * 180.02562 * 17 16 14 43 43 H 1.09004 * 109.46045 * 178.24380 * 22 9 6 44 44 H 1.08998 * 109.46754 * 58.27151 * 22 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0412 -0.7234 1.2490 5 6 1.5750 -2.1814 1.2115 6 6 2.0846 -2.8420 -0.0713 7 6 3.6141 -2.8106 -0.0881 8 6 1.6041 -4.2937 -0.1227 9 7 1.5675 -2.1139 -1.2371 10 6 1.9223 -2.8005 -2.4865 11 6 1.3896 -2.0175 -3.6587 12 8 0.6592 -1.0673 -3.4717 13 7 1.7249 -2.3729 -4.9147 14 6 1.2408 -1.6603 -5.9812 15 1 0.5903 -0.8142 -5.8147 16 6 1.5860 -2.0270 -7.2762 17 7 1.1215 -1.3442 -8.2983 18 14 2.7103 -3.4907 -7.5640 19 1 1.8934 -4.7235 -7.6982 20 1 3.4922 -3.2771 -8.8083 21 1 3.6392 -3.6351 -6.4144 22 6 2.0410 -0.7239 -1.2478 23 1 -0.3633 0.5127 0.8907 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5151 -0.8893 26 1 1.6778 1.9563 0.8900 27 1 3.1309 1.4416 -0.0005 28 1 1.6779 1.9562 -0.8900 29 1 3.1305 -0.6897 1.2692 30 1 1.6451 -0.2360 2.1399 31 1 1.9715 -2.7125 2.0768 32 1 0.4856 -2.2157 1.2313 33 1 3.9981 -3.3519 0.7767 34 1 3.9773 -3.2815 -1.0015 35 1 3.9568 -1.7766 -0.0510 36 1 0.5144 -4.3164 -0.1104 37 1 1.9666 -4.7643 -1.0367 38 1 1.9885 -4.8345 0.7420 39 1 3.0068 -2.8774 -2.5635 40 1 1.4862 -3.7994 -2.4885 41 1 2.3093 -3.1325 -5.0642 42 1 1.3622 -1.6005 -9.2024 43 1 1.6669 -0.2197 -2.1389 44 1 3.1309 -0.7115 -1.2541 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599538704.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:57 Heat of formation + Delta-G solvation = -54.867375 kcal Electronic energy + Delta-G solvation = -22393.127815 eV Core-core repulsion = 19344.452091 eV Total energy + Delta-G solvation = -3048.675724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.62133 -39.82806 -36.62237 -36.05233 -33.83381 -33.71718 -30.06017 -29.33656 -28.50497 -27.70590 -26.44641 -25.26721 -23.98016 -21.36124 -20.78474 -20.09254 -18.45172 -17.83197 -16.86908 -16.68130 -16.30060 -15.88779 -15.49260 -15.30471 -15.21047 -14.97861 -14.66202 -14.34595 -13.99813 -13.81348 -13.61960 -13.12875 -13.02525 -12.91592 -12.70405 -12.61991 -12.57782 -12.42870 -12.40401 -12.25157 -11.98779 -11.97648 -11.53824 -11.48659 -11.19696 -11.08989 -10.88117 -10.26069 -10.09124 -8.99870 -8.41510 -6.01460 1.28369 1.33807 1.42335 1.95453 2.21840 2.66955 3.14600 3.22077 3.75938 3.91550 3.97180 4.03550 4.17841 4.27167 4.34836 4.39091 4.47667 4.57909 4.62773 4.71461 4.78622 4.82376 4.85766 4.91759 4.99036 5.03768 5.06418 5.11386 5.14121 5.19333 5.24934 5.27814 5.38750 5.40962 5.50776 5.54401 5.60870 5.74897 5.93829 6.18572 6.43754 6.60857 6.89273 7.40383 7.98161 8.76230 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024901 B = 0.005583 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.163886 B = 5013.971370 C = 5657.181329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.057 4.057 3 C -0.137 4.137 4 C -0.105 4.105 5 C -0.101 4.101 6 C 0.100 3.900 7 C -0.180 4.180 8 C -0.141 4.141 9 N -0.513 5.513 10 C 0.050 3.950 11 C 0.450 3.550 12 O -0.596 6.596 13 N -0.593 5.593 14 C -0.325 4.325 15 H 0.056 0.944 16 C -0.014 4.014 17 N -0.935 5.935 18 Si 0.962 3.038 19 H -0.256 1.256 20 H -0.275 1.275 21 H -0.235 1.235 22 C 0.052 3.948 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.020 0.980 26 H 0.072 0.928 27 H 0.057 0.943 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.117 0.883 41 H 0.387 0.613 42 H 0.279 0.721 43 H 0.066 0.934 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.449 -6.783 20.757 23.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.058 4.058 3 C -0.195 4.195 4 C -0.142 4.142 5 C -0.138 4.138 6 C 0.011 3.989 7 C -0.238 4.238 8 C -0.199 4.199 9 N -0.237 5.237 10 C -0.081 4.081 11 C 0.238 3.762 12 O -0.480 6.480 13 N -0.235 5.235 14 C -0.454 4.454 15 H 0.074 0.926 16 C -0.213 4.213 17 N -0.576 5.576 18 Si 0.783 3.217 19 H -0.181 1.181 20 H -0.200 1.200 21 H -0.158 1.158 22 C -0.075 4.075 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.039 0.961 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.135 0.865 41 H 0.223 0.777 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 6.419 -6.103 20.705 22.520 hybrid contribution 1.070 -0.234 -1.370 1.755 sum 7.490 -6.337 19.334 21.681 Atomic orbital electron populations 1.21630 0.94768 1.01656 0.99613 1.20522 0.95896 0.94842 0.94503 1.21806 1.00889 0.95244 1.01582 1.21664 1.00604 0.95447 0.96486 1.21622 1.01248 0.95257 0.95710 1.21267 0.92854 0.94368 0.90418 1.22491 0.96462 1.02153 1.02723 1.21941 1.01583 0.93642 1.02688 1.61786 1.59865 1.01703 1.00385 1.21905 0.99518 0.98520 0.88143 1.20870 0.84237 0.86782 0.84319 1.90485 1.40603 1.31819 1.85104 1.42067 1.46055 1.30061 1.05340 1.18989 1.28674 1.12319 0.85406 0.92611 1.26070 0.99511 1.01712 0.93992 1.69805 1.46116 1.42066 0.99591 0.85398 0.78786 0.77944 0.79610 1.18062 1.19962 1.15811 1.22391 0.96025 0.89334 0.99793 0.92176 0.92409 0.96055 0.90856 0.92359 0.94636 0.91514 0.90622 0.89399 0.91768 0.90080 0.92992 0.92708 0.92666 0.92393 0.90028 0.91460 0.86509 0.77741 0.91197 0.91596 0.95712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.56 8.03 71.99 0.58 -2.98 16 2 C -0.06 -1.55 0.77 -52.13 -0.04 -1.59 16 3 C -0.14 -3.43 8.48 71.98 0.61 -2.82 16 4 C -0.10 -2.11 4.48 30.67 0.14 -1.97 16 5 C -0.10 -1.95 4.54 30.64 0.14 -1.81 16 6 C 0.10 2.20 0.68 3.55 0.00 2.21 16 7 C -0.18 -3.49 7.46 71.98 0.54 -2.96 16 8 C -0.14 -2.66 8.05 71.98 0.58 -2.08 16 9 N -0.51 -15.86 3.60 -851.34 -3.07 -18.93 16 10 C 0.05 1.64 4.74 85.55 0.41 2.05 16 11 C 0.45 20.84 7.29 87.66 0.64 21.48 16 12 O -0.60 -33.12 13.43 -3.08 -0.04 -33.16 16 13 N -0.59 -28.67 5.09 -306.99 -1.56 -30.23 16 14 C -0.32 -19.28 10.16 84.04 0.85 -18.43 16 15 H 0.06 3.93 7.39 -2.91 -0.02 3.91 16 16 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 17 N -0.93 -57.02 13.96 21.66 0.30 -56.72 16 18 Si 0.96 39.49 27.74 68.60 1.90 41.39 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 20 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 21 H -0.23 -8.21 6.52 99.48 0.65 -7.56 16 22 C 0.05 1.75 3.45 86.33 0.30 2.05 16 23 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.06 1.82 6.01 -2.39 -0.01 1.80 16 25 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.26 6.56 -2.39 -0.02 1.24 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.39 6.58 -2.38 -0.02 1.37 16 33 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.05 1.05 6.53 -2.39 -0.02 1.03 16 35 H 0.05 1.16 4.80 -2.39 -0.01 1.15 16 36 H 0.05 1.15 8.14 -2.39 -0.02 1.14 16 37 H 0.06 1.08 6.34 -2.38 -0.02 1.07 16 38 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.94 6.43 -2.39 -0.02 1.93 16 40 H 0.12 3.32 6.25 -2.39 -0.01 3.30 16 41 H 0.39 15.69 5.76 -92.71 -0.53 15.15 16 42 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 43 H 0.07 2.93 5.09 -2.39 -0.01 2.91 16 44 H 0.02 0.79 6.19 -2.39 -0.01 0.78 16 Total: -1.00 -72.87 321.84 3.14 -69.74 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.40 Total: 35.10 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.21 Total: -7.20 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -4.33 Total: -105.87 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.04 Total: -33.16 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.90 Total: 41.39 kcal Total: -72.87 3.14 -69.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599538704.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.869 kcal (2) G-P(sol) polarization free energy of solvation -72.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds