Wall clock time and date at job start Mon Mar 30 2020 01:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47068 * 269.99427 * 3 2 1 5 5 H 1.48490 * 109.47706 * 29.99805 * 3 2 1 6 6 H 1.48504 * 109.46887 * 150.00284 * 3 2 1 7 7 C 1.37880 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99276 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99950 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.46963 * 110.99709 * 293.79891 * 10 9 7 12 12 C 1.53050 * 109.36113 * 176.81070 * 11 10 9 13 13 N 1.46954 * 109.36504 * 58.40423 * 12 11 10 14 14 C 1.46896 * 111.00119 * 176.81078 * 13 12 11 15 15 H 1.09004 * 109.53943 * 173.33749 * 14 13 12 16 16 C 1.54200 * 109.54161 * 53.17067 * 14 13 12 17 17 C 1.46283 * 111.99464 * 162.60516 * 16 14 13 18 18 C 1.54122 * 112.19742 * 61.41222 * 17 16 14 19 19 O 1.40325 * 108.70466 * 280.44091 * 18 17 16 20 20 C 1.43991 * 116.57564 * 95.04693 * 19 18 17 21 21 C 1.50624 * 109.53666 * 293.58043 * 14 13 12 22 22 C 1.46956 * 110.88085 * 300.67745 * 13 12 11 23 23 C 1.46954 * 111.00125 * 170.00189 * 10 9 7 24 24 H 0.97006 * 119.99746 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47202 * 59.99931 * 9 7 2 26 26 H 1.08996 * 109.47657 * 299.99870 * 9 7 2 27 27 H 1.08996 * 109.48588 * 296.77948 * 11 10 9 28 28 H 1.09001 * 109.48583 * 56.84830 * 11 10 9 29 29 H 1.09002 * 109.49194 * 298.43258 * 12 11 10 30 30 H 1.08999 * 109.50374 * 178.38205 * 12 11 10 31 31 H 1.09009 * 108.97838 * 283.25290 * 16 14 13 32 32 H 1.09008 * 108.97544 * 41.95583 * 16 14 13 33 33 H 1.08993 * 108.94283 * 182.11591 * 17 16 14 34 34 H 1.09004 * 108.93342 * 300.80662 * 17 16 14 35 35 H 1.08997 * 109.59700 * 40.21077 * 18 17 16 36 36 H 1.09002 * 109.59131 * 160.52247 * 18 17 16 37 37 H 1.08999 * 108.69598 * 78.90873 * 20 19 18 38 38 H 1.09000 * 108.69072 * 197.00661 * 20 19 18 39 39 H 1.08999 * 108.88462 * 330.97611 * 21 14 13 40 40 H 1.09005 * 108.87705 * 89.43275 * 21 14 13 41 41 H 1.08999 * 109.49196 * 299.35500 * 22 13 12 42 42 H 1.09000 * 109.49154 * 179.28829 * 22 13 12 43 43 H 1.09000 * 109.48755 * 303.15901 * 23 10 9 44 44 H 1.09005 * 109.48864 * 63.19860 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 2.9696 -3.6568 -1.2530 12 6 4.0051 -4.7815 -1.1800 13 7 3.3202 -6.0597 -0.9418 14 6 4.2747 -7.1762 -0.9406 15 1 3.7633 -8.0927 -0.6460 16 6 5.4146 -6.8791 0.0545 17 6 6.1614 -8.0862 0.4083 18 6 6.8376 -8.7326 -0.8165 19 8 5.8763 -9.4705 -1.5240 20 6 5.2341 -8.8024 -2.6261 21 6 4.8565 -7.3431 -2.3199 22 6 2.5561 -6.0186 0.3129 23 6 1.5207 -4.8939 0.2400 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.2911 -3.8406 -2.0860 28 1 3.4777 -2.7038 -1.4007 29 1 4.7001 -4.5837 -0.3639 30 1 4.5537 -4.8327 -2.1205 31 1 6.0982 -6.1583 -0.3944 32 1 4.9904 -6.4463 0.9605 33 1 6.9272 -7.8269 1.1393 34 1 5.4768 -8.8076 0.8545 35 1 7.2482 -7.9549 -1.4604 36 1 7.6384 -9.3938 -0.4854 37 1 5.9071 -8.8167 -3.4834 38 1 4.3274 -9.3489 -2.8855 39 1 4.1249 -7.0064 -3.0544 40 1 5.7489 -6.7227 -2.4036 41 1 3.2346 -5.8348 1.1460 42 1 2.0481 -6.9716 0.4607 43 1 0.9724 -4.8428 1.1806 44 1 0.8255 -5.0915 -0.5760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:39 Heat of formation + Delta-G solvation = -38.192267 kcal Electronic energy + Delta-G solvation = -21707.409998 eV Core-core repulsion = 18659.457361 eV Total energy + Delta-G solvation = -3047.952637 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.16915 -38.30636 -35.82763 -33.47531 -32.68085 -31.65660 -30.39028 -27.97450 -26.45643 -25.68862 -23.89139 -23.16285 -21.56567 -21.07321 -20.12435 -18.70763 -16.95978 -16.73628 -16.28838 -15.58990 -15.06794 -14.73304 -14.46381 -14.33490 -14.27996 -13.90312 -13.67992 -13.40876 -13.06537 -12.66924 -12.22356 -12.02512 -11.73255 -11.65715 -11.48668 -11.10066 -10.98521 -10.94278 -10.76875 -10.74261 -10.54247 -10.49050 -10.26545 -10.21132 -9.69327 -9.60204 -9.16402 -8.43597 -8.04347 -7.20585 -6.02196 -4.03613 3.31374 3.37641 3.41791 3.62731 4.09205 4.42562 4.49322 4.65077 4.81635 4.87685 4.95978 5.06396 5.14705 5.27833 5.33296 5.36649 5.41852 5.45167 5.55768 5.66379 5.73137 5.80690 5.81921 5.85624 5.93259 5.97104 6.02844 6.06157 6.14180 6.22497 6.29146 6.47827 6.63108 6.70322 7.19626 7.22545 7.30969 7.37451 7.41076 7.80803 8.10538 8.22666 8.56670 9.03947 9.60562 11.08710 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036749 B = 0.003888 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.752729 B = 7199.454047 C = 7398.186386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.538 5.538 11 C 0.067 3.933 12 C 0.055 3.945 13 N -0.532 5.532 14 C 0.091 3.909 15 H 0.084 0.916 16 C -0.153 4.153 17 C -0.144 4.144 18 C 0.068 3.932 19 O -0.387 6.387 20 C 0.067 3.933 21 C -0.148 4.148 22 C 0.060 3.940 23 C 0.056 3.944 24 H 0.261 0.739 25 H -0.009 1.009 26 H 0.029 0.971 27 H 0.027 0.973 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.061 0.939 41 H 0.041 0.959 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.331 -16.942 -2.972 20.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.263 5.263 11 C -0.062 4.062 12 C -0.073 4.073 13 N -0.255 5.255 14 C -0.018 4.018 15 H 0.102 0.898 16 C -0.192 4.192 17 C -0.182 4.182 18 C -0.010 4.010 19 O -0.306 6.306 20 C -0.010 4.010 21 C -0.186 4.186 22 C -0.068 4.068 23 C -0.073 4.073 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.047 0.953 27 H 0.045 0.955 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.099 0.901 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.059 0.941 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.102 -16.971 -2.925 20.489 hybrid contribution 0.419 1.366 -0.020 1.429 sum 11.521 -15.605 -2.944 19.619 Atomic orbital electron populations 1.69966 1.06062 1.26740 1.51054 1.24991 0.94854 0.99285 0.95477 0.86511 0.79802 0.83167 0.78017 1.20743 1.21251 1.19818 1.21152 0.93416 0.89984 1.49989 0.91979 1.19701 0.90069 0.87327 0.96089 1.62282 1.28067 1.02734 1.33231 1.21995 0.95470 0.97437 0.91275 1.22261 0.96266 0.88751 1.00020 1.62516 1.24946 1.03338 1.34731 1.21378 0.91481 0.95006 0.93903 0.89823 1.21291 0.98656 0.98244 1.00959 1.21048 1.00382 0.98131 0.98687 1.22328 0.90665 0.95480 0.92496 1.87441 1.55638 1.41055 1.46456 1.22925 0.97177 0.92883 0.87976 1.22002 1.01522 0.96498 0.98535 1.22166 0.95942 0.98432 0.90285 1.22064 0.94778 0.90018 1.00400 0.92938 0.99093 0.95258 0.95454 0.89728 0.94042 0.91405 0.92069 0.91383 0.91548 0.91237 0.93109 0.90101 0.93214 0.89389 0.89282 0.92073 0.94110 0.91328 0.91114 0.95212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -14.30 8.47 -34.44 -0.29 -14.59 16 8 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 9 C 0.19 5.11 4.72 -4.98 -0.02 5.09 16 10 N -0.54 -11.80 4.70 -235.90 -1.11 -12.91 16 11 C 0.07 1.33 5.43 -3.76 -0.02 1.31 16 12 C 0.05 0.87 4.83 -3.77 -0.02 0.85 16 13 N -0.53 -7.78 4.55 -227.17 -1.03 -8.81 16 14 C 0.09 1.09 1.88 -68.28 -0.13 0.96 16 15 H 0.08 1.04 7.71 -51.93 -0.40 0.64 16 16 C -0.15 -1.72 3.50 -29.30 -0.10 -1.82 16 17 C -0.14 -1.39 5.47 -29.34 -0.16 -1.55 16 18 C 0.07 0.62 6.38 37.74 0.24 0.86 16 19 O -0.39 -4.17 10.17 -33.69 -0.34 -4.51 16 20 C 0.07 0.62 6.67 37.58 0.25 0.87 16 21 C -0.15 -1.53 3.87 -27.49 -0.11 -1.63 16 22 C 0.06 0.92 5.37 -3.77 -0.02 0.90 16 23 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 26 H 0.03 0.83 8.02 -51.93 -0.42 0.41 16 27 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.79 6.79 -51.93 -0.35 1.43 16 29 H 0.04 0.68 6.77 -51.93 -0.35 0.33 16 30 H 0.07 0.95 7.07 -51.93 -0.37 0.59 16 31 H 0.06 0.70 6.90 -51.92 -0.36 0.34 16 32 H 0.07 0.87 6.24 -51.92 -0.32 0.54 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 35 H 0.05 0.44 6.98 -51.93 -0.36 0.08 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.98 7.98 -51.93 -0.41 0.56 16 40 H 0.06 0.62 6.63 -51.93 -0.34 0.27 16 41 H 0.04 0.64 6.51 -51.93 -0.34 0.30 16 42 H 0.07 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 325.49 15.07 4.91 4.91 Total: -1.00 -29.95 325.49 -10.12 -40.07 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -7.76 Total: -2.98 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -0.50 Total: -6.27 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: -1.41 Total: -47.86 kcal Atomic # 8 Polarization: -4.17 SS G_CDS: -0.34 Total: -4.51 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.95 -10.12 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.879 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds