Wall clock time and date at job start Mon Mar 30 2020 01:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48504 * 109.47068 * 269.99427 * 3 2 1 5 5 H 1.48490 * 109.47706 * 29.99805 * 3 2 1 6 6 H 1.48504 * 109.46887 * 150.00284 * 3 2 1 7 7 C 1.37880 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99276 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99950 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47016 * 180.02562 * 9 7 2 11 11 C 1.46963 * 110.99709 * 293.79891 * 10 9 7 12 12 C 1.53050 * 109.36113 * 176.81070 * 11 10 9 13 13 N 1.46954 * 109.36504 * 58.40423 * 12 11 10 14 14 C 1.46896 * 111.00119 * 176.81078 * 13 12 11 15 15 H 1.09004 * 109.53943 * 173.33749 * 14 13 12 16 16 C 1.54200 * 109.54161 * 53.17067 * 14 13 12 17 17 C 1.46283 * 111.99464 * 162.60516 * 16 14 13 18 18 C 1.54122 * 112.19742 * 61.41222 * 17 16 14 19 19 O 1.40325 * 108.70466 * 280.44091 * 18 17 16 20 20 C 1.43991 * 116.57564 * 95.04693 * 19 18 17 21 21 C 1.50624 * 109.53666 * 293.58043 * 14 13 12 22 22 C 1.46956 * 110.88085 * 300.67745 * 13 12 11 23 23 C 1.46954 * 111.00125 * 170.00189 * 10 9 7 24 24 H 0.97006 * 119.99746 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47202 * 59.99931 * 9 7 2 26 26 H 1.08996 * 109.47657 * 299.99870 * 9 7 2 27 27 H 1.08996 * 109.48588 * 296.77948 * 11 10 9 28 28 H 1.09001 * 109.48583 * 56.84830 * 11 10 9 29 29 H 1.09002 * 109.49194 * 298.43258 * 12 11 10 30 30 H 1.08999 * 109.50374 * 178.38205 * 12 11 10 31 31 H 1.09009 * 108.97838 * 283.25290 * 16 14 13 32 32 H 1.09008 * 108.97544 * 41.95583 * 16 14 13 33 33 H 1.08993 * 108.94283 * 182.11591 * 17 16 14 34 34 H 1.09004 * 108.93342 * 300.80662 * 17 16 14 35 35 H 1.08997 * 109.59700 * 40.21077 * 18 17 16 36 36 H 1.09002 * 109.59131 * 160.52247 * 18 17 16 37 37 H 1.08999 * 108.69598 * 78.90873 * 20 19 18 38 38 H 1.09000 * 108.69072 * 197.00661 * 20 19 18 39 39 H 1.08999 * 108.88462 * 330.97611 * 21 14 13 40 40 H 1.09005 * 108.87705 * 89.43275 * 21 14 13 41 41 H 1.08999 * 109.49196 * 299.35500 * 22 13 12 42 42 H 1.09000 * 109.49154 * 179.28829 * 22 13 12 43 43 H 1.09000 * 109.48755 * 303.15901 * 23 10 9 44 44 H 1.09005 * 109.48864 * 63.19860 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0018 11 6 2.9696 -3.6568 -1.2530 12 6 4.0051 -4.7815 -1.1800 13 7 3.3202 -6.0597 -0.9418 14 6 4.2747 -7.1762 -0.9406 15 1 3.7633 -8.0927 -0.6460 16 6 5.4146 -6.8791 0.0545 17 6 6.1614 -8.0862 0.4083 18 6 6.8376 -8.7326 -0.8165 19 8 5.8763 -9.4705 -1.5240 20 6 5.2341 -8.8024 -2.6261 21 6 4.8565 -7.3431 -2.3199 22 6 2.5561 -6.0186 0.3129 23 6 1.5207 -4.8939 0.2400 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5570 -0.8897 26 1 0.6240 -2.5567 0.8902 27 1 2.2911 -3.8406 -2.0860 28 1 3.4777 -2.7038 -1.4007 29 1 4.7001 -4.5837 -0.3639 30 1 4.5537 -4.8327 -2.1205 31 1 6.0982 -6.1583 -0.3944 32 1 4.9904 -6.4463 0.9605 33 1 6.9272 -7.8269 1.1393 34 1 5.4768 -8.8076 0.8545 35 1 7.2482 -7.9549 -1.4604 36 1 7.6384 -9.3938 -0.4854 37 1 5.9071 -8.8167 -3.4834 38 1 4.3274 -9.3489 -2.8855 39 1 4.1249 -7.0064 -3.0544 40 1 5.7489 -6.7227 -2.4036 41 1 3.2346 -5.8348 1.1460 42 1 2.0481 -6.9716 0.4607 43 1 0.9724 -4.8428 1.1806 44 1 0.8255 -5.0915 -0.5760 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601315174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:39 Heat of formation + Delta-G solvation = -59.298851 kcal Electronic energy + Delta-G solvation = -21708.325248 eV Core-core repulsion = 18659.457361 eV Total energy + Delta-G solvation = -3048.867887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18438 -39.49471 -37.18350 -34.97215 -34.06518 -32.90162 -31.81721 -29.68594 -27.44426 -27.02296 -25.20171 -24.62905 -23.31495 -22.00230 -21.22625 -20.01794 -18.50668 -17.77676 -17.68783 -16.82872 -16.31284 -15.95061 -15.87063 -15.78022 -15.50194 -15.21648 -15.01819 -14.78424 -14.21276 -13.87992 -13.76263 -13.35557 -13.22864 -12.99571 -12.73412 -12.51086 -12.47282 -12.32979 -12.15960 -12.08775 -11.92495 -11.77835 -11.58525 -11.41990 -11.20022 -11.14146 -10.63207 -10.36058 -9.25604 -9.02469 -8.21849 -6.32569 1.40252 1.41924 1.53562 2.39306 2.82303 3.04708 3.10379 3.28862 3.63628 3.80510 3.98830 4.06914 4.08876 4.20033 4.24089 4.30111 4.38092 4.44357 4.48280 4.59678 4.61980 4.64993 4.71840 4.82845 4.85323 4.94594 4.97085 5.01150 5.07494 5.12118 5.17276 5.19508 5.22605 5.27207 5.33028 5.35867 5.62415 6.00961 6.09528 6.15200 6.34956 6.49792 6.60948 6.83290 7.37368 8.89567 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036749 B = 0.003888 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.752729 B = 7199.454047 C = 7398.186386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.063 0.937 9 C 0.208 3.792 10 N -0.543 5.543 11 C 0.068 3.932 12 C 0.070 3.930 13 N -0.538 5.538 14 C 0.094 3.906 15 H 0.083 0.917 16 C -0.146 4.146 17 C -0.141 4.141 18 C 0.066 3.934 19 O -0.403 6.403 20 C 0.068 3.932 21 C -0.143 4.143 22 C 0.070 3.930 23 C 0.055 3.945 24 H 0.265 0.735 25 H -0.041 1.041 26 H 0.003 0.997 27 H 0.014 0.986 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.521 -17.718 -3.319 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.268 5.268 11 C -0.061 4.061 12 C -0.058 4.058 13 N -0.262 5.262 14 C -0.014 4.014 15 H 0.101 0.899 16 C -0.185 4.185 17 C -0.179 4.179 18 C -0.011 4.011 19 O -0.322 6.322 20 C -0.008 4.008 21 C -0.181 4.181 22 C -0.058 4.058 23 C -0.074 4.074 24 H 0.074 0.926 25 H -0.023 1.023 26 H 0.021 0.979 27 H 0.032 0.968 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.109 0.891 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 13.310 -17.779 -3.276 22.450 hybrid contribution -0.305 1.548 0.088 1.580 sum 13.005 -16.231 -3.187 21.041 Atomic orbital electron populations 1.70099 1.07824 1.27956 1.51710 1.25945 0.95745 1.03290 0.94695 0.85352 0.78532 0.78070 0.78482 1.19695 1.20702 1.18848 1.21435 0.93564 0.90985 1.50190 0.91891 1.19357 0.90121 0.89098 0.93242 1.62222 1.27165 1.02955 1.34481 1.21997 0.95747 0.98550 0.89760 1.22077 0.94704 0.87842 1.01174 1.62505 1.25880 1.03543 1.34267 1.21420 0.91152 0.93504 0.95307 0.89920 1.21228 0.98371 0.98968 0.99910 1.21013 1.00433 0.97153 0.99347 1.22430 0.90625 0.95932 0.92123 1.87430 1.56075 1.41763 1.46931 1.22964 0.97784 0.91926 0.88128 1.21953 1.01430 0.97575 0.97129 1.22057 0.95208 0.97822 0.90723 1.22154 0.95721 0.89639 0.99877 0.92645 1.02340 0.97908 0.96772 0.91428 0.94235 0.89099 0.92030 0.92957 0.90366 0.91884 0.92440 0.88576 0.91650 0.88957 0.89754 0.91521 0.94196 0.88982 0.91256 0.96180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.18 13.29 21.45 0.28 -56.90 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.52 -30.23 8.47 25.60 0.22 -30.01 16 8 H 0.06 3.55 7.13 -2.91 -0.02 3.53 16 9 C 0.21 11.52 4.72 85.55 0.40 11.92 16 10 N -0.54 -24.47 4.70 -900.26 -4.23 -28.71 16 11 C 0.07 2.73 5.43 86.31 0.47 3.20 16 12 C 0.07 2.13 4.83 86.31 0.42 2.54 16 13 N -0.54 -14.98 4.55 -872.63 -3.97 -18.95 16 14 C 0.09 2.05 1.88 44.55 0.08 2.13 16 15 H 0.08 1.86 7.71 -2.38 -0.02 1.84 16 16 C -0.15 -2.98 3.50 28.93 0.10 -2.88 16 17 C -0.14 -2.39 5.47 28.90 0.16 -2.23 16 18 C 0.07 1.01 6.38 72.36 0.46 1.47 16 19 O -0.40 -7.60 10.17 -143.47 -1.46 -9.06 16 20 C 0.07 1.09 6.67 72.26 0.48 1.57 16 21 C -0.14 -2.60 3.87 30.10 0.12 -2.48 16 22 C 0.07 2.08 5.37 86.31 0.46 2.54 16 23 C 0.05 2.07 5.61 86.31 0.48 2.56 16 24 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 25 H -0.04 -2.48 8.12 -2.38 -0.02 -2.50 16 26 H 0.00 0.17 8.02 -2.39 -0.02 0.15 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.07 2.91 6.79 -2.39 -0.02 2.89 16 29 H 0.04 1.23 6.77 -2.39 -0.02 1.22 16 30 H 0.09 2.36 7.07 -2.39 -0.02 2.34 16 31 H 0.06 1.26 6.90 -2.38 -0.02 1.24 16 32 H 0.05 1.24 6.24 -2.38 -0.01 1.23 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 35 H 0.06 0.81 6.98 -2.39 -0.02 0.80 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.65 7.98 -2.39 -0.02 1.63 16 40 H 0.07 1.15 6.63 -2.38 -0.02 1.13 16 41 H 0.04 1.21 6.51 -2.39 -0.02 1.20 16 42 H 0.09 2.33 8.07 -2.39 -0.02 2.31 16 43 H 0.07 2.60 8.07 -2.39 -0.02 2.58 16 44 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 Total: -1.00 -65.23 325.49 -2.08 -67.31 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.95 Total: 8.86 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 4.32 Total: -9.13 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -7.92 Total: -104.56 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -1.46 Total: -9.06 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -65.23 -2.08 -67.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.011 kcal (2) G-P(sol) polarization free energy of solvation -65.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds