Wall clock time and date at job start Mon Mar 30 2020 01:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46957 * 111.00227 * 293.80108 * 10 9 7 12 12 C 1.53051 * 109.36288 * 176.81101 * 11 10 9 13 13 N 1.46948 * 109.36666 * 58.40430 * 12 11 10 14 14 C 1.46894 * 111.00364 * 176.80971 * 13 12 11 15 15 H 1.09000 * 109.63952 * 184.19594 * 14 13 12 16 16 C 1.50285 * 109.63500 * 304.80258 * 14 13 12 17 17 C 1.54602 * 112.95800 * 211.78364 * 16 14 13 18 18 C 1.54351 * 111.45093 * 318.99526 * 17 16 14 19 19 O 1.39952 * 112.57273 * 319.31607 * 18 17 16 20 20 C 1.44227 * 112.36816 * 97.12004 * 19 18 17 21 21 C 1.45988 * 112.10417 * 277.40360 * 20 19 18 22 22 C 1.46957 * 110.87760 * 300.67709 * 13 12 11 23 23 C 1.46952 * 110.99951 * 169.99745 * 10 9 7 24 24 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 27 27 H 1.08994 * 109.48679 * 296.77747 * 11 10 9 28 28 H 1.09002 * 109.48992 * 56.84223 * 11 10 9 29 29 H 1.09000 * 109.49159 * 298.42901 * 12 11 10 30 30 H 1.08999 * 109.48373 * 178.36958 * 12 11 10 31 31 H 1.09011 * 108.78651 * 332.68030 * 16 14 13 32 32 H 1.09004 * 108.79003 * 90.88287 * 16 14 13 33 33 H 1.09003 * 109.08469 * 198.49132 * 17 16 14 34 34 H 1.08996 * 109.08415 * 79.50593 * 17 16 14 35 35 H 1.09001 * 108.86221 * 198.51450 * 18 17 16 36 36 H 1.08999 * 108.86274 * 80.11526 * 18 17 16 37 37 H 1.09000 * 108.95401 * 156.73402 * 20 19 18 38 38 H 1.08998 * 108.95597 * 38.08851 * 20 19 18 39 39 H 1.08993 * 109.03623 * 299.48915 * 21 20 19 40 40 H 1.09001 * 109.02785 * 180.64603 * 21 20 19 41 41 H 1.09004 * 109.49248 * 299.35343 * 22 13 12 42 42 H 1.09002 * 109.48992 * 179.28945 * 22 13 12 43 43 H 1.08999 * 109.49386 * 303.15691 * 23 10 9 44 44 H 1.09000 * 109.48575 * 63.20559 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9688 -3.6562 -1.2558 12 6 4.0043 -4.7810 -1.1841 13 7 3.3196 -6.0592 -0.9459 14 6 4.2742 -7.1758 -0.9458 15 1 3.7359 -8.1179 -0.8421 16 6 5.0537 -7.1738 -2.2307 17 6 5.4602 -8.5924 -2.6917 18 6 5.9220 -9.4616 -1.5027 19 8 6.7129 -8.7508 -0.5929 20 6 5.9523 -8.2626 0.5311 21 6 5.2634 -7.0120 0.2267 22 6 2.5565 -6.0187 0.3094 23 6 1.5210 -4.8940 0.2378 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.2897 -3.8397 -2.0884 28 1 3.4767 -2.7032 -1.4036 29 1 4.6999 -4.5835 -0.3684 30 1 4.5519 -4.8316 -2.1251 31 1 4.4461 -6.7123 -3.0093 32 1 5.9558 -6.5775 -2.0931 33 1 6.2739 -8.5134 -3.4126 34 1 4.6057 -9.0696 -3.1714 35 1 6.4965 -10.3053 -1.8852 36 1 5.0432 -9.8431 -0.9828 37 1 6.6273 -8.0994 1.3713 38 1 5.2146 -9.0140 0.8126 39 1 6.0016 -6.2539 -0.0344 40 1 4.7159 -6.6837 1.1102 41 1 3.2356 -5.8352 1.1421 42 1 2.0486 -6.9718 0.4571 43 1 0.9734 -4.8434 1.1788 44 1 0.8252 -5.0913 -0.5777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601315175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:42 Heat of formation + Delta-G solvation = -33.691695 kcal Electronic energy + Delta-G solvation = -21730.750914 eV Core-core repulsion = 18682.993436 eV Total energy + Delta-G solvation = -3047.757478 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.28647 -38.37050 -35.80024 -33.29362 -32.69265 -31.68746 -30.46584 -28.08935 -26.76637 -25.27599 -23.79784 -23.08487 -21.99623 -21.23686 -19.90633 -18.72326 -16.90010 -16.64575 -16.27474 -15.40794 -15.29752 -14.87762 -14.55089 -14.42084 -14.19663 -13.96745 -13.49048 -13.28867 -13.10587 -12.65407 -12.38666 -12.00631 -11.77064 -11.64650 -11.34944 -11.07139 -11.00694 -10.92848 -10.78361 -10.75155 -10.48316 -10.45505 -10.25005 -10.21724 -9.77958 -9.63663 -9.17665 -8.42570 -8.04910 -7.20833 -6.01608 -4.03143 3.34016 3.37947 3.40892 3.68415 4.06983 4.43119 4.48126 4.73879 4.82210 4.91651 4.96945 4.99243 5.16407 5.22961 5.33772 5.35437 5.41936 5.44388 5.56809 5.60813 5.68107 5.72742 5.77840 5.89991 5.93107 6.01634 6.04439 6.06324 6.14526 6.21687 6.29681 6.46323 6.63139 6.71682 7.05888 7.22037 7.29979 7.37295 7.40776 7.80984 8.10642 8.22693 8.56836 9.04182 9.61036 11.09269 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036690 B = 0.003899 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.965140 B = 7180.005779 C = 7353.698038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.067 3.933 12 C 0.054 3.946 13 N -0.530 5.530 14 C 0.090 3.910 15 H 0.077 0.923 16 C -0.113 4.113 17 C -0.143 4.143 18 C 0.058 3.942 19 O -0.372 6.372 20 C 0.067 3.933 21 C -0.193 4.193 22 C 0.057 3.943 23 C 0.056 3.944 24 H 0.262 0.738 25 H -0.009 1.009 26 H 0.029 0.971 27 H 0.027 0.973 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.050 0.950 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 -18.367 -2.057 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.062 4.062 12 C -0.074 4.074 13 N -0.253 5.253 14 C -0.019 4.019 15 H 0.095 0.905 16 C -0.151 4.151 17 C -0.181 4.181 18 C -0.020 4.020 19 O -0.290 6.290 20 C -0.010 4.010 21 C -0.232 4.232 22 C -0.071 4.071 23 C -0.073 4.073 24 H 0.071 0.929 25 H 0.009 0.991 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.089 0.911 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 9.690 -18.184 -2.081 20.709 hybrid contribution 0.024 0.972 0.038 0.974 sum 9.714 -17.211 -2.042 19.869 Atomic orbital electron populations 1.69950 1.06066 1.26866 1.50981 1.24987 0.94853 0.99281 0.95451 0.86565 0.79443 0.82792 0.78637 1.20265 1.21356 1.20196 1.21119 0.93401 0.89988 1.50123 0.92003 1.19695 0.90056 0.87318 0.96071 1.62280 1.28085 1.02694 1.33252 1.21999 0.95465 0.97485 0.91229 1.22282 0.96242 0.88584 1.00278 1.62542 1.24866 1.03391 1.34545 1.21384 0.91462 0.95087 0.93924 0.90468 1.21411 0.99671 0.96658 0.97359 1.22573 1.01050 0.96205 0.98297 1.22328 0.94995 0.93757 0.90872 1.87770 1.34437 1.72784 1.34010 1.21463 0.95401 0.95383 0.88713 1.21934 1.00222 0.99591 1.01413 1.22204 0.95999 0.98423 0.90429 1.22058 0.94754 0.90058 1.00394 0.92878 0.99095 0.95282 0.95438 0.89670 0.94154 0.91036 0.90805 0.91918 0.91533 0.91297 0.90648 0.93317 0.89684 0.93137 0.90794 0.90051 0.93874 0.91427 0.91113 0.95225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.35 8.47 -34.44 -0.29 -14.64 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.35 16 9 C 0.19 5.12 4.72 -4.98 -0.02 5.09 16 10 N -0.54 -11.77 4.70 -235.91 -1.11 -12.88 16 11 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 12 C 0.05 0.86 4.93 -3.77 -0.02 0.85 16 13 N -0.53 -7.75 4.64 -227.32 -1.05 -8.81 16 14 C 0.09 1.06 2.00 -68.40 -0.14 0.93 16 15 H 0.08 0.87 7.10 -51.93 -0.37 0.50 16 16 C -0.11 -1.26 3.75 -27.24 -0.10 -1.37 16 17 C -0.14 -1.31 6.27 -25.18 -0.16 -1.47 16 18 C 0.06 0.52 6.09 37.87 0.23 0.75 16 19 O -0.37 -4.11 10.35 -32.80 -0.34 -4.45 16 20 C 0.07 0.65 6.11 33.83 0.21 0.86 16 21 C -0.19 -2.15 4.05 -29.39 -0.12 -2.27 16 22 C 0.06 0.86 5.20 -3.77 -0.02 0.84 16 23 C 0.06 1.04 5.61 -3.77 -0.02 1.02 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 26 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.82 6.79 -51.93 -0.35 1.46 16 29 H 0.04 0.67 6.99 -51.93 -0.36 0.30 16 30 H 0.07 1.04 6.48 -51.93 -0.34 0.70 16 31 H 0.07 0.89 7.41 -51.92 -0.38 0.51 16 32 H 0.06 0.75 7.22 -51.93 -0.38 0.37 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.05 0.39 6.54 -51.93 -0.34 0.05 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.43 7.35 -51.93 -0.38 0.05 16 39 H 0.07 0.92 6.90 -51.93 -0.36 0.56 16 40 H 0.08 0.95 5.71 -51.93 -0.30 0.66 16 41 H 0.04 0.65 6.14 -51.93 -0.32 0.33 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 43 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 323.18 15.07 4.87 4.87 Total: -1.00 -30.07 323.18 -10.09 -40.15 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -7.60 Total: -2.82 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -0.57 Total: -6.61 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -1.43 Total: -47.86 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.34 Total: -4.45 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.07 -10.09 -40.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.463 kcal (2) G-P(sol) polarization free energy of solvation -30.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds