Wall clock time and date at job start Mon Mar 30 2020 01:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48494 * 109.47116 * 240.00559 * 3 2 1 5 5 H 1.48500 * 109.46585 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46730 * 120.00538 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46957 * 111.00227 * 293.80108 * 10 9 7 12 12 C 1.53051 * 109.36288 * 176.81101 * 11 10 9 13 13 N 1.46948 * 109.36666 * 58.40430 * 12 11 10 14 14 C 1.46894 * 111.00364 * 176.80971 * 13 12 11 15 15 H 1.09000 * 109.63952 * 184.19594 * 14 13 12 16 16 C 1.50285 * 109.63500 * 304.80258 * 14 13 12 17 17 C 1.54602 * 112.95800 * 211.78364 * 16 14 13 18 18 C 1.54351 * 111.45093 * 318.99526 * 17 16 14 19 19 O 1.39952 * 112.57273 * 319.31607 * 18 17 16 20 20 C 1.44227 * 112.36816 * 97.12004 * 19 18 17 21 21 C 1.45988 * 112.10417 * 277.40360 * 20 19 18 22 22 C 1.46957 * 110.87760 * 300.67709 * 13 12 11 23 23 C 1.46952 * 110.99951 * 169.99745 * 10 9 7 24 24 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 26 26 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 27 27 H 1.08994 * 109.48679 * 296.77747 * 11 10 9 28 28 H 1.09002 * 109.48992 * 56.84223 * 11 10 9 29 29 H 1.09000 * 109.49159 * 298.42901 * 12 11 10 30 30 H 1.08999 * 109.48373 * 178.36958 * 12 11 10 31 31 H 1.09011 * 108.78651 * 332.68030 * 16 14 13 32 32 H 1.09004 * 108.79003 * 90.88287 * 16 14 13 33 33 H 1.09003 * 109.08469 * 198.49132 * 17 16 14 34 34 H 1.08996 * 109.08415 * 79.50593 * 17 16 14 35 35 H 1.09001 * 108.86221 * 198.51450 * 18 17 16 36 36 H 1.08999 * 108.86274 * 80.11526 * 18 17 16 37 37 H 1.09000 * 108.95401 * 156.73402 * 20 19 18 38 38 H 1.08998 * 108.95597 * 38.08851 * 20 19 18 39 39 H 1.08993 * 109.03623 * 299.48915 * 21 20 19 40 40 H 1.09001 * 109.02785 * 180.64603 * 21 20 19 41 41 H 1.09004 * 109.49248 * 299.35343 * 22 13 12 42 42 H 1.09002 * 109.48992 * 179.28945 * 22 13 12 43 43 H 1.08999 * 109.49386 * 303.15691 * 23 10 9 44 44 H 1.09000 * 109.48575 * 63.20559 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9688 -3.6562 -1.2558 12 6 4.0043 -4.7810 -1.1841 13 7 3.3196 -6.0592 -0.9459 14 6 4.2742 -7.1758 -0.9458 15 1 3.7359 -8.1179 -0.8421 16 6 5.0537 -7.1738 -2.2307 17 6 5.4602 -8.5924 -2.6917 18 6 5.9220 -9.4616 -1.5027 19 8 6.7129 -8.7508 -0.5929 20 6 5.9523 -8.2626 0.5311 21 6 5.2634 -7.0120 0.2267 22 6 2.5565 -6.0187 0.3094 23 6 1.5210 -4.8940 0.2378 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5568 -0.8903 26 1 0.6247 -2.5571 0.8897 27 1 2.2897 -3.8397 -2.0884 28 1 3.4767 -2.7032 -1.4036 29 1 4.6999 -4.5835 -0.3684 30 1 4.5519 -4.8316 -2.1251 31 1 4.4461 -6.7123 -3.0093 32 1 5.9558 -6.5775 -2.0931 33 1 6.2739 -8.5134 -3.4126 34 1 4.6057 -9.0696 -3.1714 35 1 6.4965 -10.3053 -1.8852 36 1 5.0432 -9.8431 -0.9828 37 1 6.6273 -8.0994 1.3713 38 1 5.2146 -9.0140 0.8126 39 1 6.0016 -6.2539 -0.0344 40 1 4.7159 -6.6837 1.1102 41 1 3.2356 -5.8352 1.1421 42 1 2.0486 -6.9718 0.4571 43 1 0.9734 -4.8434 1.1788 44 1 0.8252 -5.0913 -0.5777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601315175.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:41 Heat of formation + Delta-G solvation = -55.093834 kcal Electronic energy + Delta-G solvation = -21731.678980 eV Core-core repulsion = 18682.993436 eV Total energy + Delta-G solvation = -3048.685544 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28069 -39.56709 -37.18521 -34.91072 -33.88663 -32.96806 -31.88606 -29.73001 -27.93387 -26.64498 -25.02390 -24.47118 -23.45602 -22.50651 -21.00864 -19.98845 -18.50145 -17.88842 -17.41331 -16.82481 -16.23383 -16.11755 -15.85573 -15.78687 -15.66400 -15.35725 -14.88410 -14.70050 -14.10372 -14.01030 -13.67410 -13.35948 -13.24119 -13.07036 -12.72624 -12.58528 -12.44967 -12.20039 -12.17289 -12.10574 -11.87149 -11.76741 -11.54157 -11.40588 -11.17200 -11.15731 -10.62486 -10.48799 -9.25249 -9.02462 -8.21832 -6.32566 1.40112 1.43528 1.51496 2.39266 2.90796 2.99193 3.10231 3.28988 3.62610 3.86814 3.98120 4.10995 4.14406 4.19713 4.24901 4.32872 4.35903 4.41551 4.45638 4.55562 4.64090 4.66026 4.75677 4.76423 4.84338 4.91100 4.97068 4.99782 5.04645 5.14272 5.17192 5.21345 5.24821 5.27176 5.30374 5.36567 5.62214 6.00738 6.09028 6.14750 6.34646 6.37087 6.61512 6.83032 7.37308 8.89318 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036690 B = 0.003899 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.965140 B = 7180.005779 C = 7353.698038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.543 5.543 11 C 0.069 3.931 12 C 0.070 3.930 13 N -0.538 5.538 14 C 0.094 3.906 15 H 0.093 0.907 16 C -0.111 4.111 17 C -0.139 4.139 18 C 0.053 3.947 19 O -0.390 6.390 20 C 0.066 3.934 21 C -0.184 4.184 22 C 0.067 3.933 23 C 0.053 3.947 24 H 0.265 0.735 25 H -0.042 1.042 26 H 0.004 0.996 27 H 0.013 0.987 28 H 0.066 0.934 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.078 0.922 41 H 0.046 0.954 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.188 -19.778 -1.953 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.080 0.920 9 C 0.082 3.918 10 N -0.268 5.268 11 C -0.060 4.060 12 C -0.058 4.058 13 N -0.261 5.261 14 C -0.014 4.014 15 H 0.111 0.889 16 C -0.149 4.149 17 C -0.177 4.177 18 C -0.024 4.024 19 O -0.308 6.308 20 C -0.010 4.010 21 C -0.223 4.223 22 C -0.061 4.061 23 C -0.075 4.075 24 H 0.074 0.926 25 H -0.024 1.024 26 H 0.022 0.978 27 H 0.032 0.968 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.116 0.884 43 H 0.090 0.910 44 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.219 -19.629 -1.979 22.695 hybrid contribution -0.482 1.356 -0.017 1.439 sum 10.737 -18.273 -1.996 21.288 Atomic orbital electron populations 1.70083 1.07787 1.28033 1.51640 1.25930 0.95745 1.03244 0.94679 0.85422 0.78162 0.77809 0.79153 1.19192 1.20733 1.19269 1.21416 0.93550 0.91067 1.50317 0.91971 1.19349 0.90096 0.89055 0.93268 1.62217 1.27209 1.03073 1.34276 1.21975 0.95708 0.98430 0.89844 1.22059 0.94681 0.88043 1.01052 1.62523 1.25780 1.03377 1.34462 1.21448 0.91210 0.94197 0.94595 0.88939 1.21375 0.98817 0.98007 0.96693 1.22556 1.01634 0.94898 0.98622 1.22478 0.95618 0.93821 0.90532 1.87760 1.35400 1.73061 1.34623 1.21505 0.95867 0.94978 0.88681 1.21857 0.99641 1.00094 1.00735 1.22130 0.95217 0.98029 0.90693 1.22177 0.95787 0.89623 0.99943 0.92623 1.02384 0.97768 0.96836 0.91606 0.94482 0.89451 0.91867 0.93019 0.91297 0.90095 0.89224 0.92102 0.88914 0.91337 0.92365 0.90389 0.93601 0.88423 0.91039 0.96258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.23 13.29 21.45 0.28 -56.95 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.53 -30.46 8.47 25.60 0.22 -30.24 16 8 H 0.06 3.52 7.13 -2.91 -0.02 3.50 16 9 C 0.21 11.54 4.72 85.56 0.40 11.94 16 10 N -0.54 -24.40 4.70 -900.29 -4.23 -28.63 16 11 C 0.07 2.82 5.43 86.31 0.47 3.29 16 12 C 0.07 2.19 4.93 86.31 0.43 2.62 16 13 N -0.54 -14.87 4.64 -873.10 -4.05 -18.93 16 14 C 0.09 1.98 2.00 44.47 0.09 2.07 16 15 H 0.09 1.74 7.10 -2.39 -0.02 1.72 16 16 C -0.11 -2.27 3.75 30.26 0.11 -2.15 16 17 C -0.14 -2.18 6.27 31.60 0.20 -1.98 16 18 C 0.05 0.78 6.09 72.44 0.44 1.22 16 19 O -0.39 -7.60 10.35 -140.29 -1.45 -9.05 16 20 C 0.07 1.10 6.11 69.83 0.43 1.53 16 21 C -0.18 -3.72 4.05 28.87 0.12 -3.60 16 22 C 0.07 1.89 5.20 86.31 0.45 2.34 16 23 C 0.05 1.98 5.61 86.31 0.48 2.46 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 26 H 0.00 0.25 8.03 -2.39 -0.02 0.23 16 27 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.07 2.90 6.79 -2.39 -0.02 2.88 16 29 H 0.04 1.20 6.99 -2.39 -0.02 1.18 16 30 H 0.09 2.47 6.48 -2.39 -0.02 2.46 16 31 H 0.06 1.43 7.41 -2.38 -0.02 1.41 16 32 H 0.05 1.16 7.22 -2.38 -0.02 1.15 16 33 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.06 0.75 6.54 -2.39 -0.02 0.74 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.07 0.91 7.35 -2.39 -0.02 0.89 16 39 H 0.06 1.36 6.90 -2.39 -0.02 1.35 16 40 H 0.08 1.64 5.71 -2.39 -0.01 1.63 16 41 H 0.05 1.30 6.14 -2.39 -0.01 1.28 16 42 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.07 2.60 8.07 -2.39 -0.02 2.58 16 44 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -65.83 323.18 -2.17 -68.01 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.96 Total: 8.67 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 4.29 Total: -9.93 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -8.00 Total: -104.50 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -1.45 Total: -9.05 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.83 -2.17 -68.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601315175.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.911 kcal (2) G-P(sol) polarization free energy of solvation -65.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds