Wall clock time and date at job start Mon Mar 30 2020 01:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48499 * 109.47384 * 269.99991 * 3 2 1 5 5 H 1.48500 * 109.47197 * 29.99909 * 3 2 1 6 6 H 1.48502 * 109.47391 * 149.99972 * 3 2 1 7 7 C 1.37877 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99663 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99963 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.46956 * 111.00293 * 169.99898 * 10 9 7 12 12 C 1.53056 * 109.38342 * 183.17592 * 11 10 9 13 13 N 1.46963 * 109.35944 * 301.62902 * 12 11 10 14 14 C 1.46903 * 110.99595 * 183.16796 * 13 12 11 15 15 C 1.52995 * 109.47274 * 66.17850 * 14 13 12 16 16 C 1.52993 * 109.47377 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.43840 * 303.90748 * 16 15 14 18 18 C 1.54810 * 110.49314 * 181.22129 * 16 15 14 19 19 C 1.54993 * 102.09554 * 220.44765 * 18 16 15 20 20 O 1.44377 * 103.49417 * 37.01797 * 19 18 16 21 21 C 1.43745 * 106.97389 * 319.94476 * 20 19 18 22 22 C 1.46956 * 110.89784 * 59.28921 * 13 12 11 23 23 C 1.46962 * 110.99604 * 293.79709 * 10 9 7 24 24 H 0.97008 * 119.99941 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47474 * 59.99889 * 9 7 2 26 26 H 1.09001 * 109.47284 * 299.99683 * 9 7 2 27 27 H 1.09002 * 109.48806 * 303.15319 * 11 10 9 28 28 H 1.09002 * 109.49141 * 63.19591 * 11 10 9 29 29 H 1.08992 * 109.49038 * 61.57437 * 12 11 10 30 30 H 1.08994 * 109.48641 * 181.64718 * 12 11 10 31 31 H 1.09001 * 109.46898 * 186.18135 * 14 13 12 32 32 H 1.08997 * 109.46990 * 306.17810 * 14 13 12 33 33 H 1.09001 * 109.46970 * 300.00314 * 15 14 13 34 34 H 1.08997 * 109.47145 * 60.00055 * 15 14 13 35 35 H 1.09004 * 110.90221 * 338.64160 * 18 16 15 36 36 H 1.09000 * 110.91001 * 102.24314 * 18 16 15 37 37 H 1.09003 * 110.61355 * 278.51592 * 19 18 16 38 38 H 1.08999 * 110.75362 * 155.58721 * 19 18 16 39 39 H 1.09004 * 109.87738 * 267.08756 * 21 20 19 40 40 H 1.09006 * 110.00481 * 146.00394 * 21 20 19 41 41 H 1.09002 * 109.48806 * 180.71933 * 22 13 12 42 42 H 1.09003 * 109.49203 * 60.65575 * 22 13 12 43 43 H 1.09001 * 109.48625 * 296.77747 * 23 10 9 44 44 H 1.09003 * 109.48941 * 56.82355 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5114 -1.1940 0.0011 10 7 4.0011 -2.5790 0.0010 11 6 5.4506 -2.6251 -0.2367 12 6 5.9074 -4.0842 -0.3083 13 7 5.5601 -4.7655 0.9467 14 6 6.0497 -6.1506 0.9467 15 6 7.5797 -6.1506 0.9472 16 6 8.0897 -7.5930 0.9478 17 1 7.6791 -8.1416 1.7955 18 6 9.6372 -7.6207 0.9792 19 6 9.9615 -8.7729 -0.0054 20 8 8.9592 -8.6288 -1.0345 21 6 7.7263 -8.2942 -0.3755 22 6 4.1106 -4.7194 1.1844 23 6 3.6542 -3.2603 1.2561 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 5.6809 -2.1254 -1.1777 28 1 5.9692 -2.1213 0.5790 29 1 5.4097 -4.5807 -1.1411 30 1 6.9868 -4.1204 -0.4553 31 1 5.6860 -6.6645 1.8364 32 1 5.6867 -6.6642 0.0565 33 1 7.9433 -5.6366 0.0574 34 1 7.9427 -5.6369 1.8373 35 1 10.0504 -6.6769 0.6232 36 1 10.0019 -7.8503 1.9804 37 1 9.8668 -9.7392 0.4901 38 1 10.9610 -8.6537 -0.4237 39 1 7.1576 -9.2013 -0.1703 40 1 7.1391 -7.6225 -1.0017 41 1 3.8803 -5.2191 2.1254 42 1 3.5920 -5.2229 0.3685 43 1 4.1524 -2.7640 2.0889 44 1 2.5749 -3.2233 1.4037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602747884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:05 Heat of formation + Delta-G solvation = -40.158204 kcal Electronic energy + Delta-G solvation = -20913.008766 eV Core-core repulsion = 17864.970880 eV Total energy + Delta-G solvation = -3048.037887 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.88285 -38.76246 -35.79668 -33.71579 -32.35946 -30.66129 -30.42458 -28.85696 -27.13985 -25.06809 -23.32437 -23.10391 -21.86149 -21.01820 -20.25202 -19.23517 -16.96328 -16.78032 -16.51664 -15.64712 -15.17870 -15.00929 -14.54187 -14.42381 -14.36494 -13.80322 -13.64921 -13.30441 -13.16562 -12.85334 -12.42256 -12.33682 -11.88683 -11.70295 -11.62113 -11.42629 -11.35271 -11.04148 -10.85689 -10.81914 -10.70407 -10.51722 -10.31380 -10.00590 -9.92489 -9.79259 -9.25630 -8.56506 -8.16440 -7.35110 -6.05034 -4.02327 3.29062 3.36412 3.38989 3.66000 3.94500 4.22946 4.42559 4.51627 4.58427 4.77901 4.84660 4.88449 5.04239 5.15978 5.24493 5.27622 5.32560 5.36333 5.45621 5.47443 5.51213 5.56490 5.64611 5.72165 5.74706 5.81210 5.87485 5.98792 6.00391 6.04899 6.19103 6.33451 6.51944 6.58692 6.64349 6.85010 6.98279 7.22374 7.26815 7.60552 7.92412 8.06519 8.66526 9.02862 9.56911 11.08049 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048630 B = 0.003189 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.637364 B = 8778.848818 C = 8964.735727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.509 4.509 8 H 0.080 0.920 9 C 0.163 3.837 10 N -0.530 5.530 11 C 0.054 3.946 12 C 0.059 3.941 13 N -0.541 5.541 14 C 0.053 3.947 15 C -0.107 4.107 16 C -0.121 4.121 17 H 0.083 0.917 18 C -0.150 4.150 19 C 0.045 3.955 20 O -0.380 6.380 21 C 0.048 3.952 22 C 0.058 3.942 23 C 0.067 3.933 24 H 0.263 0.737 25 H -0.011 1.011 26 H 0.023 0.977 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.071 0.929 42 H 0.040 0.960 43 H 0.029 0.971 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.559 -15.747 3.077 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.703 3.297 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.547 4.547 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.255 5.255 11 C -0.075 4.075 12 C -0.069 4.069 13 N -0.265 5.265 14 C -0.075 4.075 15 C -0.144 4.144 16 C -0.140 4.140 17 H 0.102 0.898 18 C -0.188 4.188 19 C -0.032 4.032 20 O -0.299 6.299 21 C -0.029 4.029 22 C -0.070 4.070 23 C -0.061 4.061 24 H 0.073 0.927 25 H 0.007 0.993 26 H 0.041 0.959 27 H 0.089 0.911 28 H 0.048 0.952 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 18.408 -15.638 2.848 24.321 hybrid contribution 0.285 0.985 0.245 1.054 sum 18.693 -14.653 3.093 23.952 Atomic orbital electron populations 1.69896 1.06126 1.26832 1.51144 1.24900 0.94740 0.98873 0.94840 0.86857 0.80314 0.83982 0.78580 1.20159 1.21215 1.19259 1.21031 0.88739 0.94688 1.50274 0.90198 1.20151 0.97036 0.84118 0.95067 1.62106 1.10400 1.19067 1.33900 1.22116 0.90181 0.94888 1.00353 1.22188 0.99577 0.94984 0.90172 1.62176 1.14839 1.14597 1.34934 1.22137 0.94912 0.89779 1.00641 1.21634 0.95186 0.94447 1.03167 1.22561 0.95609 0.97562 0.98311 0.89831 1.23200 0.95279 0.99939 1.00385 1.23547 0.93048 0.97537 0.89041 1.88881 1.19159 1.91128 1.30731 1.23340 0.87252 0.98814 0.93490 1.22231 0.86355 0.98140 1.00227 1.22026 1.01756 0.91692 0.90669 0.92674 0.99325 0.95854 0.91062 0.95156 0.94248 0.90980 0.91031 0.94917 0.91405 0.90737 0.90200 0.90213 0.92357 0.89105 0.92516 0.89522 0.91052 0.94197 0.95301 0.89004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.98 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.51 -14.54 9.03 -34.44 -0.31 -14.85 16 8 H 0.08 2.47 7.37 -52.49 -0.39 2.09 16 9 C 0.16 4.01 3.79 -4.98 -0.02 3.99 16 10 N -0.53 -11.34 4.70 -235.90 -1.11 -12.44 16 11 C 0.05 0.95 5.61 -3.76 -0.02 0.93 16 12 C 0.06 0.87 5.41 -3.76 -0.02 0.85 16 13 N -0.54 -7.71 4.71 -234.46 -1.10 -8.81 16 14 C 0.05 0.59 4.78 -3.82 -0.02 0.57 16 15 C -0.11 -1.00 4.37 -26.74 -0.12 -1.12 16 16 C -0.12 -0.96 3.08 -89.09 -0.27 -1.24 16 17 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 18 C -0.15 -1.06 6.71 -24.72 -0.17 -1.23 16 19 C 0.04 0.34 7.72 38.21 0.29 0.64 16 20 O -0.38 -4.11 11.52 -35.23 -0.41 -4.51 16 21 C 0.05 0.44 6.93 37.73 0.26 0.70 16 22 C 0.06 0.92 5.61 -3.77 -0.02 0.90 16 23 C 0.07 1.31 5.43 -3.76 -0.02 1.29 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 26 H 0.02 0.58 7.45 -51.93 -0.39 0.19 16 27 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.91 6.34 -51.93 -0.33 0.59 16 31 H 0.07 0.74 8.03 -51.93 -0.42 0.32 16 32 H 0.03 0.36 6.84 -51.93 -0.36 0.01 16 33 H 0.07 0.69 6.49 -51.93 -0.34 0.35 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.09 0.84 6.70 -51.93 -0.35 0.49 16 41 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 1.98 6.79 -51.93 -0.35 1.63 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -31.23 333.97 -9.94 -41.17 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -7.93 Total: -3.81 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.53 Total: -6.70 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: -1.44 Total: -48.16 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.41 Total: -4.51 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.23 -9.94 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602747884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.012 kcal (2) G-P(sol) polarization free energy of solvation -31.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds