Wall clock time and date at job start Mon Mar 30 2020 01:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48499 * 109.47384 * 269.99991 * 3 2 1 5 5 H 1.48500 * 109.47197 * 29.99909 * 3 2 1 6 6 H 1.48502 * 109.47391 * 149.99972 * 3 2 1 7 7 C 1.37877 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99663 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99963 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47186 * 180.02562 * 9 7 2 11 11 C 1.46956 * 111.00293 * 169.99898 * 10 9 7 12 12 C 1.53056 * 109.38342 * 183.17592 * 11 10 9 13 13 N 1.46963 * 109.35944 * 301.62902 * 12 11 10 14 14 C 1.46903 * 110.99595 * 183.16796 * 13 12 11 15 15 C 1.52995 * 109.47274 * 66.17850 * 14 13 12 16 16 C 1.52993 * 109.47377 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.43840 * 303.90748 * 16 15 14 18 18 C 1.54810 * 110.49314 * 181.22129 * 16 15 14 19 19 C 1.54993 * 102.09554 * 220.44765 * 18 16 15 20 20 O 1.44377 * 103.49417 * 37.01797 * 19 18 16 21 21 C 1.43745 * 106.97389 * 319.94476 * 20 19 18 22 22 C 1.46956 * 110.89784 * 59.28921 * 13 12 11 23 23 C 1.46962 * 110.99604 * 293.79709 * 10 9 7 24 24 H 0.97008 * 119.99941 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47474 * 59.99889 * 9 7 2 26 26 H 1.09001 * 109.47284 * 299.99683 * 9 7 2 27 27 H 1.09002 * 109.48806 * 303.15319 * 11 10 9 28 28 H 1.09002 * 109.49141 * 63.19591 * 11 10 9 29 29 H 1.08992 * 109.49038 * 61.57437 * 12 11 10 30 30 H 1.08994 * 109.48641 * 181.64718 * 12 11 10 31 31 H 1.09001 * 109.46898 * 186.18135 * 14 13 12 32 32 H 1.08997 * 109.46990 * 306.17810 * 14 13 12 33 33 H 1.09001 * 109.46970 * 300.00314 * 15 14 13 34 34 H 1.08997 * 109.47145 * 60.00055 * 15 14 13 35 35 H 1.09004 * 110.90221 * 338.64160 * 18 16 15 36 36 H 1.09000 * 110.91001 * 102.24314 * 18 16 15 37 37 H 1.09003 * 110.61355 * 278.51592 * 19 18 16 38 38 H 1.08999 * 110.75362 * 155.58721 * 19 18 16 39 39 H 1.09004 * 109.87738 * 267.08756 * 21 20 19 40 40 H 1.09006 * 110.00481 * 146.00394 * 21 20 19 41 41 H 1.09002 * 109.48806 * 180.71933 * 22 13 12 42 42 H 1.09003 * 109.49203 * 60.65575 * 22 13 12 43 43 H 1.09001 * 109.48625 * 296.77747 * 23 10 9 44 44 H 1.09003 * 109.48941 * 56.82355 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5114 -1.1940 0.0011 10 7 4.0011 -2.5790 0.0010 11 6 5.4506 -2.6251 -0.2367 12 6 5.9074 -4.0842 -0.3083 13 7 5.5601 -4.7655 0.9467 14 6 6.0497 -6.1506 0.9467 15 6 7.5797 -6.1506 0.9472 16 6 8.0897 -7.5930 0.9478 17 1 7.6791 -8.1416 1.7955 18 6 9.6372 -7.6207 0.9792 19 6 9.9615 -8.7729 -0.0054 20 8 8.9592 -8.6288 -1.0345 21 6 7.7263 -8.2942 -0.3755 22 6 4.1106 -4.7194 1.1844 23 6 3.6542 -3.2603 1.2561 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6800 0.8911 26 1 3.8752 -0.6804 -0.8889 27 1 5.6809 -2.1254 -1.1777 28 1 5.9692 -2.1213 0.5790 29 1 5.4097 -4.5807 -1.1411 30 1 6.9868 -4.1204 -0.4553 31 1 5.6860 -6.6645 1.8364 32 1 5.6867 -6.6642 0.0565 33 1 7.9433 -5.6366 0.0574 34 1 7.9427 -5.6369 1.8373 35 1 10.0504 -6.6769 0.6232 36 1 10.0019 -7.8503 1.9804 37 1 9.8668 -9.7392 0.4901 38 1 10.9610 -8.6537 -0.4237 39 1 7.1576 -9.2013 -0.1703 40 1 7.1391 -7.6225 -1.0017 41 1 3.8803 -5.2191 2.1254 42 1 3.5920 -5.2229 0.3685 43 1 4.1524 -2.7640 2.0889 44 1 2.5749 -3.2233 1.4037 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602747884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:04 Heat of formation + Delta-G solvation = -63.130647 kcal Electronic energy + Delta-G solvation = -20914.004926 eV Core-core repulsion = 17864.970880 eV Total energy + Delta-G solvation = -3049.034046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.65869 -39.98921 -37.12237 -34.97369 -34.17724 -31.89749 -31.46518 -30.19548 -28.39557 -26.42993 -24.48031 -24.19605 -23.12326 -22.33910 -21.01690 -20.64743 -18.95096 -17.60764 -17.44986 -16.80900 -16.30557 -16.13087 -15.88680 -15.84427 -15.54136 -15.20811 -15.16515 -14.63299 -14.22326 -14.07332 -13.65030 -13.55701 -13.10574 -12.99808 -12.80665 -12.58505 -12.46518 -12.27832 -12.21650 -12.06839 -11.84101 -11.75023 -11.62983 -11.46968 -11.38222 -11.17267 -10.79135 -10.59371 -9.33224 -9.04390 -8.29706 -6.33332 1.34182 1.35478 1.46460 2.33483 2.87680 3.03022 3.06976 3.20904 3.60301 3.78776 3.94380 4.01106 4.11707 4.17498 4.29618 4.33093 4.33696 4.39715 4.46081 4.54206 4.61253 4.65400 4.69541 4.79540 4.83718 4.87092 4.89597 4.92064 4.94888 4.98009 5.04634 5.10724 5.13621 5.17011 5.29924 5.35584 5.51322 5.93148 5.96831 6.03851 6.16804 6.35925 6.63841 6.72340 7.30468 8.86828 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.048630 B = 0.003189 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.637364 B = 8778.848818 C = 8964.735727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.008 3.992 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.253 1.253 7 C -0.517 4.517 8 H 0.037 0.963 9 C 0.173 3.827 10 N -0.547 5.547 11 C 0.052 3.948 12 C 0.066 3.934 13 N -0.544 5.544 14 C 0.054 3.946 15 C -0.097 4.097 16 C -0.115 4.115 17 H 0.097 0.903 18 C -0.146 4.146 19 C 0.039 3.961 20 O -0.409 6.409 21 C 0.044 3.956 22 C 0.069 3.931 23 C 0.070 3.930 24 H 0.267 0.733 25 H -0.014 1.014 26 H 0.028 0.972 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.030 0.970 43 H 0.025 0.975 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.279 -16.054 3.681 26.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.177 1.177 7 C -0.555 4.555 8 H 0.056 0.944 9 C 0.046 3.954 10 N -0.272 5.272 11 C -0.076 4.076 12 C -0.062 4.062 13 N -0.269 5.269 14 C -0.073 4.073 15 C -0.135 4.135 16 C -0.134 4.134 17 H 0.115 0.885 18 C -0.184 4.184 19 C -0.037 4.037 20 O -0.329 6.329 21 C -0.032 4.032 22 C -0.059 4.059 23 C -0.059 4.059 24 H 0.076 0.924 25 H 0.003 0.997 26 H 0.046 0.954 27 H 0.096 0.904 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.048 0.952 43 H 0.043 0.957 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 21.154 -15.974 3.454 26.732 hybrid contribution -0.590 0.968 0.052 1.135 sum 20.564 -15.006 3.506 25.697 Atomic orbital electron populations 1.70048 1.08095 1.28156 1.52500 1.25847 0.95625 1.03151 0.94290 0.85695 0.79244 0.78574 0.79302 1.18885 1.20604 1.17726 1.21239 0.90992 0.93276 1.50029 0.94431 1.19906 0.94316 0.86333 0.94866 1.62026 1.13180 1.17110 1.34911 1.22234 0.87531 0.97237 1.00636 1.22136 1.00965 0.92911 0.90169 1.62186 1.13385 1.16751 1.34588 1.22229 0.96048 0.87750 1.01268 1.21537 0.93692 0.95427 1.02828 1.22520 0.96354 0.96477 0.98072 0.88482 1.23193 0.94424 0.99552 1.01214 1.23748 0.92854 0.98388 0.88732 1.88849 1.20205 1.91335 1.32476 1.23390 0.86928 0.99105 0.93816 1.22070 0.87544 0.95172 1.01095 1.21949 0.99840 0.94191 0.89893 0.92372 0.99662 0.95363 0.90351 0.95073 0.95079 0.88272 0.89789 0.94891 0.92096 0.90619 0.90600 0.88376 0.91201 0.88167 0.91848 0.90549 0.88805 0.95196 0.95660 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 2 C 0.01 0.49 5.47 84.66 0.46 0.95 16 3 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 4 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.25 -11.24 6.54 99.48 0.65 -10.59 16 7 C -0.52 -30.50 9.03 25.60 0.23 -30.27 16 8 H 0.04 2.47 7.37 -2.91 -0.02 2.44 16 9 C 0.17 8.55 3.79 85.56 0.32 8.87 16 10 N -0.55 -23.51 4.70 -900.26 -4.23 -27.74 16 11 C 0.05 1.76 5.61 86.31 0.48 2.25 16 12 C 0.07 1.83 5.41 86.31 0.47 2.29 16 13 N -0.54 -14.43 4.71 -895.71 -4.22 -18.65 16 14 C 0.05 1.06 4.78 86.30 0.41 1.48 16 15 C -0.10 -1.56 4.37 30.59 0.13 -1.42 16 16 C -0.12 -1.52 3.08 -9.80 -0.03 -1.55 16 17 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 18 C -0.15 -1.65 6.71 31.89 0.21 -1.44 16 19 C 0.04 0.50 7.72 72.66 0.56 1.06 16 20 O -0.41 -8.25 11.52 -148.98 -1.72 -9.97 16 21 C 0.04 0.73 6.93 72.36 0.50 1.23 16 22 C 0.07 2.13 5.61 86.31 0.48 2.62 16 23 C 0.07 2.77 5.43 86.31 0.47 3.24 16 24 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 25 H -0.01 -0.71 7.18 -2.39 -0.02 -0.73 16 26 H 0.03 1.37 7.45 -2.39 -0.02 1.35 16 27 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 28 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 2.23 6.34 -2.39 -0.02 2.22 16 31 H 0.08 1.47 8.03 -2.39 -0.02 1.45 16 32 H 0.03 0.67 6.84 -2.39 -0.02 0.65 16 33 H 0.06 1.07 6.49 -2.39 -0.02 1.06 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.08 0.93 7.87 -2.38 -0.02 0.91 16 36 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.08 1.39 6.70 -2.38 -0.02 1.37 16 41 H 0.09 2.45 8.07 -2.39 -0.02 2.43 16 42 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 2.68 6.79 -2.39 -0.02 2.67 16 Total: -1.00 -68.75 333.97 -2.38 -71.13 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: 0.89 Total: 8.90 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: 4.71 Total: -10.68 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -8.15 Total: -105.88 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -1.72 Total: -9.97 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -68.75 -2.38 -71.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602747884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.003 kcal (2) G-P(sol) polarization free energy of solvation -68.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds