Wall clock time and date at job start Mon Mar 30 2020 01:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46952 * 110.99858 * 293.80109 * 10 9 7 12 12 C 1.53051 * 109.36275 * 176.81282 * 11 10 9 13 13 N 1.46956 * 109.36658 * 58.40123 * 12 11 10 14 14 C 1.46903 * 111.00102 * 176.81195 * 13 12 11 15 15 C 1.52996 * 109.47065 * 313.79720 * 14 13 12 16 16 C 1.53003 * 109.47140 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.45100 * 52.39476 * 16 15 14 18 18 C 1.54509 * 110.51098 * 174.99813 * 16 15 14 19 19 C 1.54484 * 104.05823 * 118.64554 * 18 16 15 20 20 O 1.44419 * 104.80431 * 23.98408 * 19 18 16 21 21 C 1.44430 * 105.27257 * 319.48098 * 20 19 18 22 22 C 1.46961 * 110.87957 * 300.67644 * 13 12 11 23 23 C 1.46957 * 111.00078 * 169.99798 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09001 * 109.48698 * 296.77600 * 11 10 9 28 28 H 1.08995 * 109.49098 * 56.84621 * 11 10 9 29 29 H 1.09007 * 109.48975 * 298.43095 * 12 11 10 30 30 H 1.08996 * 109.49029 * 178.36729 * 12 11 10 31 31 H 1.09004 * 109.47020 * 73.79760 * 14 13 12 32 32 H 1.08993 * 109.47106 * 193.79736 * 14 13 12 33 33 H 1.08990 * 109.47367 * 300.00174 * 15 14 13 34 34 H 1.09007 * 109.47085 * 59.99828 * 15 14 13 35 35 H 1.08997 * 110.51582 * 237.28983 * 18 16 15 36 36 H 1.09005 * 110.51006 * 359.86994 * 18 16 15 37 37 H 1.09001 * 110.36583 * 142.81090 * 19 18 16 38 38 H 1.09001 * 110.37494 * 265.14569 * 19 18 16 39 39 H 1.08994 * 110.37576 * 281.68388 * 21 20 19 40 40 H 1.09007 * 110.37108 * 159.34645 * 21 20 19 41 41 H 1.09001 * 109.48899 * 299.35691 * 22 13 12 42 42 H 1.08995 * 109.49032 * 179.28587 * 22 13 12 43 43 H 1.09000 * 109.49358 * 303.16158 * 23 10 9 44 44 H 1.09003 * 109.48519 * 63.19937 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.9687 -3.6562 -1.2558 12 6 4.0041 -4.7810 -1.1841 13 7 3.3194 -6.0593 -0.9460 14 6 4.2740 -7.1759 -0.9460 15 6 5.2153 -7.0421 -2.1446 16 6 6.2099 -8.2047 -2.1443 17 1 5.6832 -9.1566 -2.0763 18 6 7.0916 -8.1633 -3.4124 19 6 8.5268 -7.9938 -2.8663 20 8 8.4741 -8.5178 -1.5216 21 6 7.2166 -8.0555 -0.9821 22 6 2.5564 -6.0188 0.3094 23 6 1.5209 -4.8940 0.2378 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 2.2895 -3.8397 -2.0884 28 1 3.4766 -2.7033 -1.4035 29 1 4.6998 -4.5836 -0.3685 30 1 4.5517 -4.8317 -2.1252 31 1 4.8550 -7.1572 -0.0238 32 1 3.7307 -8.1183 -1.0141 33 1 4.6344 -7.0608 -3.0666 34 1 5.7586 -6.0996 -2.0765 35 1 7.0028 -9.0955 -3.9701 36 1 6.8174 -7.3158 -4.0408 37 1 9.2320 -8.5660 -3.4691 38 1 8.8056 -6.9402 -2.8525 39 1 7.2945 -7.0114 -0.6793 40 1 6.9154 -8.6750 -0.1373 41 1 3.2355 -5.8354 1.1420 42 1 2.0484 -6.9718 0.4571 43 1 0.9732 -4.8434 1.1788 44 1 0.8250 -5.0913 -0.5777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602747885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:07 Heat of formation + Delta-G solvation = -42.593805 kcal Electronic energy + Delta-G solvation = -20971.590222 eV Core-core repulsion = 17923.446720 eV Total energy + Delta-G solvation = -3048.143502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.86604 -38.71989 -35.74049 -33.66725 -32.37819 -30.61211 -30.22898 -28.57382 -26.87662 -24.90231 -23.41744 -23.20675 -21.88548 -21.16696 -20.30471 -19.13053 -16.75901 -16.32266 -16.13238 -15.76251 -15.56360 -14.78049 -14.58714 -14.47943 -14.20260 -13.89571 -13.61651 -13.34701 -12.99855 -12.76888 -12.41873 -11.98183 -11.90335 -11.72026 -11.39575 -11.33992 -11.08124 -10.93825 -10.83683 -10.72547 -10.63064 -10.57203 -10.29484 -10.22905 -10.03991 -9.68013 -9.18279 -8.43249 -8.11024 -7.21737 -6.02259 -4.03816 3.33285 3.37353 3.40176 3.70299 4.04582 4.29651 4.42421 4.47027 4.67368 4.80611 4.94051 4.97993 5.11048 5.17098 5.23206 5.33083 5.37429 5.43243 5.49508 5.52299 5.57936 5.59330 5.65213 5.71287 5.82486 5.83990 5.89971 6.02057 6.06241 6.09567 6.22831 6.44700 6.52722 6.60913 6.69358 7.20012 7.26064 7.36294 7.39263 7.80250 8.10066 8.22063 8.56201 9.03455 9.60304 11.08626 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.003525 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.676902 B = 7940.591169 C = 8596.045659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.067 3.933 12 C 0.053 3.947 13 N -0.540 5.540 14 C 0.055 3.945 15 C -0.115 4.115 16 C -0.120 4.120 17 H 0.084 0.916 18 C -0.152 4.152 19 C 0.043 3.957 20 O -0.379 6.379 21 C 0.048 3.952 22 C 0.062 3.938 23 C 0.056 3.944 24 H 0.262 0.738 25 H 0.029 0.971 26 H -0.009 1.009 27 H 0.028 0.972 28 H 0.085 0.915 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.038 0.962 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.972 -16.862 -5.095 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.213 1.213 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.062 4.062 12 C -0.075 4.075 13 N -0.265 5.265 14 C -0.073 4.073 15 C -0.152 4.152 16 C -0.139 4.139 17 H 0.102 0.898 18 C -0.189 4.189 19 C -0.033 4.033 20 O -0.298 6.298 21 C -0.029 4.029 22 C -0.067 4.067 23 C -0.073 4.073 24 H 0.071 0.929 25 H 0.047 0.953 26 H 0.009 0.991 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.055 0.945 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.099 0.901 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.108 0.892 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 11.959 -16.855 -4.976 21.257 hybrid contribution 0.121 1.067 -0.083 1.077 sum 12.080 -15.788 -5.059 20.513 Atomic orbital electron populations 1.69952 1.06070 1.26876 1.50935 1.24994 0.94862 0.99296 0.95450 0.86561 0.79441 0.82772 0.78630 1.21349 1.20183 1.20275 1.21119 0.93398 0.89993 1.50169 0.92004 1.19693 0.90044 0.87289 0.96083 1.62281 1.28157 1.02758 1.33249 1.21997 0.95475 0.97435 0.91272 1.22348 0.96239 0.88762 1.00138 1.62249 1.25762 1.03444 1.35050 1.22126 0.93287 0.95055 0.96804 1.21822 0.96435 0.97497 0.99466 1.22542 0.96547 1.00126 0.94690 0.89802 1.23010 0.94887 1.03113 0.97918 1.23416 0.97098 0.99071 0.83750 1.89113 1.38650 1.74486 1.27565 1.23571 0.82899 0.99889 0.96551 1.22150 0.96177 0.98496 0.89836 1.22059 0.94760 0.90011 1.00439 0.92865 0.95269 0.99088 0.95388 0.89660 0.94508 0.90774 0.95076 0.91048 0.90578 0.91117 0.90721 0.90150 0.89288 0.92240 0.92006 0.89192 0.94352 0.91286 0.91056 0.95172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.86 13.29 55.43 0.74 -26.13 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.51 -14.34 8.47 -34.44 -0.29 -14.63 16 8 H 0.06 1.72 7.13 -52.49 -0.37 1.34 16 9 C 0.19 5.13 4.72 -4.98 -0.02 5.10 16 10 N -0.54 -11.86 4.70 -235.91 -1.11 -12.97 16 11 C 0.07 1.32 5.43 -3.77 -0.02 1.30 16 12 C 0.05 0.83 4.93 -3.77 -0.02 0.81 16 13 N -0.54 -7.88 4.86 -234.46 -1.14 -9.02 16 14 C 0.06 0.62 5.16 -3.82 -0.02 0.60 16 15 C -0.11 -1.10 3.69 -26.73 -0.10 -1.20 16 16 C -0.12 -1.01 3.11 -89.05 -0.28 -1.29 16 17 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.15 -1.15 6.74 -25.16 -0.17 -1.32 16 19 C 0.04 0.36 7.63 37.94 0.29 0.65 16 20 O -0.38 -4.18 11.65 -35.23 -0.41 -4.59 16 21 C 0.05 0.45 6.51 37.93 0.25 0.69 16 22 C 0.06 0.94 5.58 -3.76 -0.02 0.92 16 23 C 0.06 1.05 5.61 -3.77 -0.02 1.03 16 24 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.03 0.82 8.03 -51.92 -0.42 0.41 16 26 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 27 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.09 1.80 6.79 -51.93 -0.35 1.44 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.01 5.99 -51.93 -0.31 0.70 16 31 H 0.03 0.35 7.57 -51.93 -0.39 -0.05 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.72 6.08 -51.93 -0.32 0.40 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.57 7.73 -51.93 -0.40 0.17 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.60 7.74 -51.93 -0.40 0.19 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 337.66 15.07 5.09 5.09 Total: -1.00 -30.61 337.66 -10.39 -41.00 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -8.02 Total: -4.16 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.52 Total: -5.86 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: -1.51 Total: -48.12 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.41 Total: -4.59 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.61 -10.39 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602747885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.590 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds