Wall clock time and date at job start Mon Mar 30 2020 01:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46952 * 110.99858 * 293.80109 * 10 9 7 12 12 C 1.53051 * 109.36275 * 176.81282 * 11 10 9 13 13 N 1.46956 * 109.36658 * 58.40123 * 12 11 10 14 14 C 1.46903 * 111.00102 * 176.81195 * 13 12 11 15 15 C 1.52996 * 109.47065 * 313.79720 * 14 13 12 16 16 C 1.53003 * 109.47140 * 179.97438 * 15 14 13 17 17 H 1.09000 * 110.45100 * 52.39476 * 16 15 14 18 18 C 1.54509 * 110.51098 * 174.99813 * 16 15 14 19 19 C 1.54484 * 104.05823 * 118.64554 * 18 16 15 20 20 O 1.44419 * 104.80431 * 23.98408 * 19 18 16 21 21 C 1.44430 * 105.27257 * 319.48098 * 20 19 18 22 22 C 1.46961 * 110.87957 * 300.67644 * 13 12 11 23 23 C 1.46957 * 111.00078 * 169.99798 * 10 9 7 24 24 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 25 25 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 26 26 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 27 27 H 1.09001 * 109.48698 * 296.77600 * 11 10 9 28 28 H 1.08995 * 109.49098 * 56.84621 * 11 10 9 29 29 H 1.09007 * 109.48975 * 298.43095 * 12 11 10 30 30 H 1.08996 * 109.49029 * 178.36729 * 12 11 10 31 31 H 1.09004 * 109.47020 * 73.79760 * 14 13 12 32 32 H 1.08993 * 109.47106 * 193.79736 * 14 13 12 33 33 H 1.08990 * 109.47367 * 300.00174 * 15 14 13 34 34 H 1.09007 * 109.47085 * 59.99828 * 15 14 13 35 35 H 1.08997 * 110.51582 * 237.28983 * 18 16 15 36 36 H 1.09005 * 110.51006 * 359.86994 * 18 16 15 37 37 H 1.09001 * 110.36583 * 142.81090 * 19 18 16 38 38 H 1.09001 * 110.37494 * 265.14569 * 19 18 16 39 39 H 1.08994 * 110.37576 * 281.68388 * 21 20 19 40 40 H 1.09007 * 110.37108 * 159.34645 * 21 20 19 41 41 H 1.09001 * 109.48899 * 299.35691 * 22 13 12 42 42 H 1.08995 * 109.49032 * 179.28587 * 22 13 12 43 43 H 1.09000 * 109.49358 * 303.16158 * 23 10 9 44 44 H 1.09003 * 109.48519 * 63.19937 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.9687 -3.6562 -1.2558 12 6 4.0041 -4.7810 -1.1841 13 7 3.3194 -6.0593 -0.9460 14 6 4.2740 -7.1759 -0.9460 15 6 5.2153 -7.0421 -2.1446 16 6 6.2099 -8.2047 -2.1443 17 1 5.6832 -9.1566 -2.0763 18 6 7.0916 -8.1633 -3.4124 19 6 8.5268 -7.9938 -2.8663 20 8 8.4741 -8.5178 -1.5216 21 6 7.2166 -8.0555 -0.9821 22 6 2.5564 -6.0188 0.3094 23 6 1.5209 -4.8940 0.2378 24 1 -0.4850 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6240 -2.5568 -0.8903 27 1 2.2895 -3.8397 -2.0884 28 1 3.4766 -2.7033 -1.4035 29 1 4.6998 -4.5836 -0.3685 30 1 4.5517 -4.8317 -2.1252 31 1 4.8550 -7.1572 -0.0238 32 1 3.7307 -8.1183 -1.0141 33 1 4.6344 -7.0608 -3.0666 34 1 5.7586 -6.0996 -2.0765 35 1 7.0028 -9.0955 -3.9701 36 1 6.8174 -7.3158 -4.0408 37 1 9.2320 -8.5660 -3.4691 38 1 8.8056 -6.9402 -2.8525 39 1 7.2945 -7.0114 -0.6793 40 1 6.9154 -8.6750 -0.1373 41 1 3.2355 -5.8354 1.1420 42 1 2.0484 -6.9718 0.4571 43 1 0.9732 -4.8434 1.1788 44 1 0.8250 -5.0913 -0.5777 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602747885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:07 Heat of formation + Delta-G solvation = -64.389770 kcal Electronic energy + Delta-G solvation = -20972.535366 eV Core-core repulsion = 17923.446720 eV Total energy + Delta-G solvation = -3049.088646 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68794 -39.96598 -37.12519 -35.01928 -34.09919 -31.92489 -31.20656 -29.90003 -28.27080 -26.37786 -24.79828 -24.11749 -23.39607 -22.38470 -21.09900 -20.53879 -18.49288 -17.54252 -17.19359 -16.70527 -16.52738 -16.29070 -15.84926 -15.79098 -15.55846 -15.34306 -15.00791 -14.59250 -14.14086 -13.89277 -13.56055 -13.45900 -13.25270 -12.97101 -12.69710 -12.57173 -12.37499 -12.31696 -12.27177 -12.13083 -11.98201 -11.74978 -11.60292 -11.35794 -11.23321 -11.16034 -10.75137 -10.62256 -9.29002 -9.03588 -8.21657 -6.32533 1.40550 1.44082 1.52054 2.39572 2.89310 3.10127 3.11640 3.29663 3.61685 3.77940 3.95241 4.04646 4.11312 4.19618 4.24164 4.34025 4.36884 4.41580 4.46736 4.52832 4.59599 4.64860 4.74462 4.81609 4.85704 4.87170 4.92935 4.97378 5.00697 5.03833 5.07813 5.12977 5.20490 5.26616 5.27890 5.35584 5.62322 5.86247 6.00758 6.07953 6.14432 6.35053 6.61537 6.83188 7.37366 8.89539 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.027480 B = 0.003525 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.676902 B = 7940.591169 C = 8596.045659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.283 1.283 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.526 4.526 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.546 5.546 11 C 0.068 3.932 12 C 0.067 3.933 13 N -0.549 5.549 14 C 0.057 3.943 15 C -0.107 4.107 16 C -0.113 4.113 17 H 0.092 0.908 18 C -0.149 4.149 19 C 0.037 3.963 20 O -0.403 6.403 21 C 0.044 3.956 22 C 0.071 3.929 23 C 0.053 3.947 24 H 0.265 0.735 25 H 0.003 0.997 26 H -0.041 1.041 27 H 0.014 0.986 28 H 0.067 0.933 29 H 0.033 0.967 30 H 0.099 0.901 31 H 0.036 0.964 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.037 0.963 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.663 -17.789 -5.580 23.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.208 1.208 5 H -0.193 1.193 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.271 5.271 11 C -0.061 4.061 12 C -0.061 4.061 13 N -0.274 5.274 14 C -0.070 4.070 15 C -0.145 4.145 16 C -0.132 4.132 17 H 0.110 0.890 18 C -0.186 4.186 19 C -0.039 4.039 20 O -0.323 6.323 21 C -0.033 4.033 22 C -0.057 4.057 23 C -0.075 4.075 24 H 0.074 0.926 25 H 0.021 0.979 26 H -0.024 1.024 27 H 0.033 0.967 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.117 0.883 31 H 0.054 0.946 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 13.669 -17.813 -5.466 23.109 hybrid contribution -0.432 1.294 0.062 1.365 sum 13.237 -16.520 -5.404 21.848 Atomic orbital electron populations 1.70088 1.07823 1.28046 1.51617 1.25953 0.95761 1.03313 0.94673 0.85406 0.78145 0.77705 0.79191 1.20786 1.19287 1.19056 1.21422 0.93588 0.91029 1.50340 0.91874 1.19342 0.90087 0.89063 0.93217 1.62224 1.27294 1.03074 1.34529 1.22002 0.95775 0.98588 0.89735 1.22188 0.94619 0.87943 1.01368 1.62239 1.26804 1.03723 1.34631 1.22213 0.93033 0.94018 0.97741 1.21737 0.96221 0.97812 0.98687 1.22472 0.96098 0.99866 0.94756 0.89012 1.23010 0.94083 1.03924 0.97613 1.23586 0.98013 0.99387 0.82944 1.89089 1.39416 1.74907 1.28883 1.23639 0.82791 0.99684 0.97137 1.22067 0.95414 0.98063 0.90189 1.22168 0.95794 0.89638 0.99924 0.92621 0.97925 1.02355 0.96732 0.91466 0.94853 0.88307 0.94600 0.89599 0.90572 0.91623 0.89764 0.89538 0.88022 0.92088 0.92545 0.88614 0.94488 0.88389 0.91182 0.96137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.52 29.54 68.60 2.03 46.55 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.53 -30.36 8.47 25.60 0.22 -30.15 16 8 H 0.06 3.55 7.13 -2.91 -0.02 3.53 16 9 C 0.21 11.56 4.72 85.55 0.40 11.97 16 10 N -0.55 -24.60 4.70 -900.28 -4.23 -28.83 16 11 C 0.07 2.70 5.43 86.31 0.47 3.17 16 12 C 0.07 2.00 4.93 86.31 0.43 2.43 16 13 N -0.55 -14.85 4.86 -895.71 -4.35 -19.20 16 14 C 0.06 1.11 5.16 86.30 0.45 1.55 16 15 C -0.11 -1.76 3.69 30.59 0.11 -1.65 16 16 C -0.11 -1.60 3.11 -9.78 -0.03 -1.63 16 17 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 18 C -0.15 -1.88 6.74 31.61 0.21 -1.67 16 19 C 0.04 0.54 7.63 72.49 0.55 1.10 16 20 O -0.40 -8.24 11.65 -148.98 -1.74 -9.98 16 21 C 0.04 0.74 6.51 72.48 0.47 1.21 16 22 C 0.07 2.03 5.58 86.31 0.48 2.51 16 23 C 0.05 2.00 5.61 86.31 0.48 2.48 16 24 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 25 H 0.00 0.16 8.03 -2.38 -0.02 0.14 16 26 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 27 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 2.89 6.79 -2.39 -0.02 2.87 16 29 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.10 2.49 5.99 -2.39 -0.01 2.47 16 31 H 0.04 0.69 7.57 -2.39 -0.02 0.67 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.07 1.16 6.08 -2.38 -0.01 1.15 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.09 1.00 7.73 -2.38 -0.02 0.98 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 1.00 7.74 -2.39 -0.02 0.98 16 40 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 44 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -66.89 337.66 -2.36 -69.25 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: 0.94 Total: 7.26 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 4.71 Total: -8.15 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -8.30 Total: -104.92 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: -1.74 Total: -9.98 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -66.89 -2.36 -69.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602747885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.859 kcal (2) G-P(sol) polarization free energy of solvation -66.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds