Wall clock time and date at job start Mon Mar 30 2020 01:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47015 * 2 1 4 4 C 1.50700 * 109.47227 * 240.00095 * 2 1 3 5 5 H 1.07997 * 120.00056 * 240.00644 * 4 2 1 6 6 C 1.37881 * 119.99728 * 59.99721 * 4 2 1 7 7 N 1.31511 * 120.00044 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47278 * 90.00271 * 8 6 4 10 10 H 1.48497 * 109.46758 * 210.00378 * 8 6 4 11 11 H 1.48498 * 109.47132 * 330.00179 * 8 6 4 12 12 N 1.46896 * 109.47072 * 119.99930 * 2 1 3 13 13 C 1.46900 * 111.00077 * 204.90143 * 12 2 1 14 14 H 1.09000 * 109.47084 * 323.41901 * 13 12 2 15 15 C 1.52996 * 109.46979 * 83.42422 * 13 12 2 16 16 C 1.50707 * 109.46862 * 203.41769 * 13 12 2 17 17 O 1.21274 * 120.00221 * 344.18912 * 16 13 12 18 18 N 1.34772 * 119.99620 * 164.19012 * 16 13 12 19 19 C 1.46932 * 120.63470 * 5.20750 * 18 16 13 20 20 C 1.52752 * 109.01148 * 233.58804 * 19 18 16 21 21 C 1.53045 * 109.38263 * 305.58406 * 20 19 18 22 22 C 1.52998 * 109.44957 * 181.25629 * 21 20 19 23 23 C 1.53041 * 109.53668 * 61.24110 * 21 20 19 24 24 C 1.46929 * 120.63205 * 185.49041 * 18 16 13 25 25 H 1.08999 * 109.47011 * 60.50836 * 1 2 3 26 26 H 1.09004 * 109.46863 * 300.51432 * 1 2 3 27 27 H 1.08992 * 109.47158 * 180.51343 * 1 2 3 28 28 H 0.97006 * 119.99662 * 179.97438 * 7 6 4 29 29 H 1.00908 * 111.00147 * 80.94645 * 12 2 1 30 30 H 1.09008 * 109.46739 * 305.53153 * 15 13 12 31 31 H 1.08994 * 109.47699 * 65.53531 * 15 13 12 32 32 H 1.09004 * 109.47088 * 185.53917 * 15 13 12 33 33 H 1.09004 * 109.58318 * 353.42292 * 19 18 16 34 34 H 1.09004 * 109.58610 * 113.83966 * 19 18 16 35 35 H 1.08999 * 109.56267 * 185.55276 * 20 19 18 36 36 H 1.08996 * 109.36709 * 65.49810 * 20 19 18 37 37 H 1.09000 * 109.46275 * 301.21965 * 21 20 19 38 38 H 1.09007 * 109.47045 * 299.93761 * 22 21 20 39 39 H 1.08999 * 109.47412 * 59.93744 * 22 21 20 40 40 H 1.09002 * 109.47050 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.49812 * 178.68057 * 23 21 20 42 42 H 1.09003 * 109.51948 * 58.60232 * 23 21 20 43 43 H 1.08999 * 109.58658 * 246.15863 * 24 18 16 44 44 H 1.09000 * 109.58381 * 6.43999 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1122 11 1 3.6293 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 3.3679 -0.2332 1.5589 14 1 3.9406 -0.0420 0.6514 15 6 3.2663 1.0545 2.3788 16 6 4.0593 -1.2950 2.3750 17 8 3.4139 -2.1922 2.8742 18 7 5.3947 -1.2474 2.5499 19 6 6.1753 -0.1079 2.0488 20 6 7.3094 -0.6300 1.1688 21 6 8.1290 -1.6574 1.9531 22 6 9.2842 -2.1584 1.0838 23 6 7.2345 -2.8369 2.3416 24 6 6.0987 -2.3370 3.2398 25 1 -0.3633 0.5059 -0.8945 26 1 -0.3633 0.5218 0.8854 27 1 -0.3633 -1.0275 0.0092 28 1 0.7095 1.1618 -3.4844 29 1 2.0005 -1.6933 1.0723 30 1 2.6809 1.7907 1.8279 31 1 2.7798 0.8419 3.3306 32 1 4.2660 1.4486 2.5617 33 1 5.5309 0.5466 1.4618 34 1 6.5938 0.4461 2.8891 35 1 7.9525 0.1986 0.8724 36 1 6.8897 -1.1013 0.2801 37 1 8.5282 -1.1920 2.8543 38 1 8.8853 -2.6243 0.1827 39 1 9.9214 -1.3185 0.8070 40 1 9.8684 -2.8898 1.6423 41 1 7.8243 -3.5789 2.8797 42 1 6.8154 -3.2879 1.4421 43 1 6.5109 -1.9686 4.1792 44 1 5.4032 -3.1519 3.4405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:12 Heat of formation + Delta-G solvation = -50.966805 kcal Electronic energy + Delta-G solvation = -21818.715836 eV Core-core repulsion = 18770.209253 eV Total energy + Delta-G solvation = -3048.506583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.15511 -37.75201 -35.80477 -33.95583 -32.91446 -31.32243 -30.21335 -28.28262 -27.14210 -25.04796 -24.27226 -23.34927 -22.16924 -20.42192 -19.74804 -18.70660 -16.95462 -16.49570 -15.75144 -15.21577 -14.86657 -14.71361 -14.40765 -14.14740 -13.68212 -13.62973 -13.33783 -12.88071 -12.65641 -12.29440 -11.99989 -11.96139 -11.79096 -11.72851 -11.32862 -11.25274 -11.17323 -11.00533 -10.96583 -10.77020 -10.53173 -10.48840 -10.25727 -10.09909 -9.97513 -9.15587 -9.05846 -8.49351 -8.41201 -7.29265 -6.01437 -4.14172 3.00885 3.17455 3.25601 3.32700 3.35233 4.38062 4.58242 4.60078 4.68188 4.92279 5.06456 5.20875 5.21423 5.28400 5.31496 5.38326 5.49698 5.52724 5.65754 5.69246 5.76602 5.79683 5.86371 5.90779 6.00024 6.01953 6.03548 6.14217 6.30624 6.41130 6.67301 6.68489 6.90888 7.19056 7.30883 7.46739 7.61438 7.74340 8.08871 8.15584 8.29655 8.51763 8.67702 8.98834 9.53803 10.99251 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.005882 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.848381 B = 4759.268237 C = 5696.088676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.207 3.793 3 H 0.035 0.965 4 C -0.546 4.546 5 H 0.052 0.948 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.672 5.672 13 C 0.074 3.926 14 H 0.069 0.931 15 C -0.134 4.134 16 C 0.519 3.481 17 O -0.533 6.533 18 N -0.617 5.617 19 C 0.104 3.896 20 C -0.134 4.134 21 C -0.091 4.091 22 C -0.147 4.147 23 C -0.130 4.130 24 C 0.112 3.888 25 H 0.082 0.918 26 H 0.014 0.986 27 H 0.025 0.975 28 H 0.261 0.739 29 H 0.339 0.661 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.043 -1.197 8.757 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.100 3.900 3 H 0.053 0.947 4 C -0.585 4.585 5 H 0.070 0.930 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.305 5.305 13 C -0.039 4.039 14 H 0.087 0.913 15 C -0.192 4.192 16 C 0.308 3.692 17 O -0.409 6.409 18 N -0.352 5.352 19 C -0.019 4.019 20 C -0.172 4.172 21 C -0.110 4.110 22 C -0.204 4.204 23 C -0.168 4.168 24 C -0.011 4.011 25 H 0.101 0.899 26 H 0.033 0.967 27 H 0.044 0.956 28 H 0.071 0.929 29 H 0.158 0.842 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 14.266 -1.130 9.326 17.082 hybrid contribution 0.990 -0.904 -1.755 2.209 sum 15.256 -2.034 7.571 17.153 Atomic orbital electron populations 1.21666 0.97516 0.99105 0.99985 1.19228 0.92621 0.94080 0.84109 0.94725 1.21856 1.31966 1.12723 0.91968 0.93010 1.24912 0.94810 0.94809 0.98847 1.69884 1.36317 1.22655 1.23464 0.86666 0.79258 0.79564 0.82934 1.20580 1.21149 1.20125 1.60899 1.18313 1.11049 1.40234 1.21345 0.92665 0.93206 0.96700 0.91331 1.21786 1.00803 0.96217 1.00376 1.21175 0.81138 0.86750 0.80164 1.90636 1.64310 1.36995 1.48941 1.48123 1.06741 1.21852 1.58504 1.21759 0.93799 0.88446 0.97863 1.21948 0.97015 0.99170 0.99054 1.21111 0.95288 0.95929 0.98653 1.21828 0.97727 1.00947 0.99899 1.21987 0.96621 0.97660 1.00520 1.21497 0.94325 0.90907 0.94337 0.89945 0.96694 0.95621 0.92865 0.84203 0.91085 0.92331 0.93077 0.88699 0.91618 0.90688 0.91091 0.91191 0.92608 0.92671 0.92815 0.91035 0.91422 0.92068 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.30 37.16 0.35 -2.78 16 2 C 0.21 5.23 2.38 -68.87 -0.16 5.06 16 3 H 0.03 0.93 6.98 -51.93 -0.36 0.56 16 4 C -0.55 -14.82 8.25 -34.44 -0.28 -15.10 16 5 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 6 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 7 N -0.88 -24.85 11.32 55.43 0.63 -24.23 16 8 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.67 -15.23 5.83 -102.17 -0.60 -15.82 16 13 C 0.07 1.43 1.98 -68.86 -0.14 1.29 16 14 H 0.07 1.38 6.56 -51.93 -0.34 1.04 16 15 C -0.13 -2.20 9.09 37.16 0.34 -1.86 16 16 C 0.52 9.55 6.86 -10.98 -0.08 9.47 16 17 O -0.53 -11.51 15.42 5.56 0.09 -11.42 16 18 N -0.62 -8.88 2.98 -173.03 -0.52 -9.40 16 19 C 0.10 1.21 5.45 -3.93 -0.02 1.19 16 20 C -0.13 -1.39 5.34 -26.83 -0.14 -1.54 16 21 C -0.09 -0.84 2.68 -90.58 -0.24 -1.09 16 22 C -0.15 -1.22 9.19 37.16 0.34 -0.88 16 23 C -0.13 -1.35 5.36 -26.61 -0.14 -1.49 16 24 C 0.11 1.39 6.42 -3.71 -0.02 1.36 16 25 H 0.08 2.22 6.06 -51.93 -0.31 1.90 16 26 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 29 H 0.34 8.14 7.48 -39.29 -0.29 7.85 16 30 H 0.07 1.24 7.25 -51.92 -0.38 0.86 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.67 6.27 -51.93 -0.33 0.35 16 33 H 0.09 1.18 4.67 -51.93 -0.24 0.94 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.51 8.14 -51.92 -0.42 0.08 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.27 7.04 -51.93 -0.37 0.91 16 LS Contribution 338.24 15.07 5.10 5.10 Total: -1.00 -29.94 338.24 -8.29 -38.23 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.66 Total: 6.00 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: -0.30 Total: -4.57 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.48 Total: -49.45 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.09 Total: -11.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.94 -8.29 -38.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.739 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds