Wall clock time and date at job start Mon Mar 30 2020 01:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47015 * 2 1 4 4 C 1.50700 * 109.47227 * 240.00095 * 2 1 3 5 5 H 1.07997 * 120.00056 * 240.00644 * 4 2 1 6 6 C 1.37881 * 119.99728 * 59.99721 * 4 2 1 7 7 N 1.31511 * 120.00044 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99703 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47278 * 90.00271 * 8 6 4 10 10 H 1.48497 * 109.46758 * 210.00378 * 8 6 4 11 11 H 1.48498 * 109.47132 * 330.00179 * 8 6 4 12 12 N 1.46896 * 109.47072 * 119.99930 * 2 1 3 13 13 C 1.46900 * 111.00077 * 204.90143 * 12 2 1 14 14 H 1.09000 * 109.47084 * 323.41901 * 13 12 2 15 15 C 1.52996 * 109.46979 * 83.42422 * 13 12 2 16 16 C 1.50707 * 109.46862 * 203.41769 * 13 12 2 17 17 O 1.21274 * 120.00221 * 344.18912 * 16 13 12 18 18 N 1.34772 * 119.99620 * 164.19012 * 16 13 12 19 19 C 1.46932 * 120.63470 * 5.20750 * 18 16 13 20 20 C 1.52752 * 109.01148 * 233.58804 * 19 18 16 21 21 C 1.53045 * 109.38263 * 305.58406 * 20 19 18 22 22 C 1.52998 * 109.44957 * 181.25629 * 21 20 19 23 23 C 1.53041 * 109.53668 * 61.24110 * 21 20 19 24 24 C 1.46929 * 120.63205 * 185.49041 * 18 16 13 25 25 H 1.08999 * 109.47011 * 60.50836 * 1 2 3 26 26 H 1.09004 * 109.46863 * 300.51432 * 1 2 3 27 27 H 1.08992 * 109.47158 * 180.51343 * 1 2 3 28 28 H 0.97006 * 119.99662 * 179.97438 * 7 6 4 29 29 H 1.00908 * 111.00147 * 80.94645 * 12 2 1 30 30 H 1.09008 * 109.46739 * 305.53153 * 15 13 12 31 31 H 1.08994 * 109.47699 * 65.53531 * 15 13 12 32 32 H 1.09004 * 109.47088 * 185.53917 * 15 13 12 33 33 H 1.09004 * 109.58318 * 353.42292 * 19 18 16 34 34 H 1.09004 * 109.58610 * 113.83966 * 19 18 16 35 35 H 1.08999 * 109.56267 * 185.55276 * 20 19 18 36 36 H 1.08996 * 109.36709 * 65.49810 * 20 19 18 37 37 H 1.09000 * 109.46275 * 301.21965 * 21 20 19 38 38 H 1.09007 * 109.47045 * 299.93761 * 22 21 20 39 39 H 1.08999 * 109.47412 * 59.93744 * 22 21 20 40 40 H 1.09002 * 109.47050 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.49812 * 178.68057 * 23 21 20 42 42 H 1.09003 * 109.51948 * 58.60232 * 23 21 20 43 43 H 1.08999 * 109.58658 * 246.15863 * 24 18 16 44 44 H 1.09000 * 109.58381 * 6.43999 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3214 -1.1203 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4866 -0.1412 -5.1122 11 1 3.6293 -1.7583 -3.7122 12 7 2.0197 -0.6925 1.1994 13 6 3.3679 -0.2332 1.5589 14 1 3.9406 -0.0420 0.6514 15 6 3.2663 1.0545 2.3788 16 6 4.0593 -1.2950 2.3750 17 8 3.4139 -2.1922 2.8742 18 7 5.3947 -1.2474 2.5499 19 6 6.1753 -0.1079 2.0488 20 6 7.3094 -0.6300 1.1688 21 6 8.1290 -1.6574 1.9531 22 6 9.2842 -2.1584 1.0838 23 6 7.2345 -2.8369 2.3416 24 6 6.0987 -2.3370 3.2398 25 1 -0.3633 0.5059 -0.8945 26 1 -0.3633 0.5218 0.8854 27 1 -0.3633 -1.0275 0.0092 28 1 0.7095 1.1618 -3.4844 29 1 2.0005 -1.6933 1.0723 30 1 2.6809 1.7907 1.8279 31 1 2.7798 0.8419 3.3306 32 1 4.2660 1.4486 2.5617 33 1 5.5309 0.5466 1.4618 34 1 6.5938 0.4461 2.8891 35 1 7.9525 0.1986 0.8724 36 1 6.8897 -1.1013 0.2801 37 1 8.5282 -1.1920 2.8543 38 1 8.8853 -2.6243 0.1827 39 1 9.9214 -1.3185 0.8070 40 1 9.8684 -2.8898 1.6423 41 1 7.8243 -3.5789 2.8797 42 1 6.8154 -3.2879 1.4421 43 1 6.5109 -1.9686 4.1792 44 1 5.4032 -3.1519 3.4405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:11 Heat of formation + Delta-G solvation = -69.816809 kcal Electronic energy + Delta-G solvation = -21819.533234 eV Core-core repulsion = 18770.209253 eV Total energy + Delta-G solvation = -3049.323980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.42930 -38.92175 -37.58294 -35.18096 -34.63648 -32.64758 -31.67541 -29.27582 -28.83373 -27.17862 -25.49366 -24.28044 -23.38054 -21.94181 -21.13100 -19.92960 -18.75216 -18.09175 -17.19864 -16.71128 -16.54808 -15.83222 -15.43329 -15.27931 -15.11780 -14.80580 -14.59724 -14.33974 -14.07160 -13.59984 -13.54902 -13.26665 -13.06974 -12.96141 -12.83310 -12.78156 -12.67791 -12.50340 -12.26132 -12.20581 -12.02034 -11.96127 -11.82321 -11.37985 -11.32128 -11.15630 -10.58375 -10.52833 -9.65319 -9.16677 -8.09854 -6.31243 1.35759 1.38226 1.46572 1.57713 1.98085 2.37826 3.11382 3.48023 3.58501 3.78414 3.85335 3.92269 4.12911 4.24432 4.33003 4.36534 4.46893 4.53875 4.70823 4.74233 4.78180 4.83829 4.86188 4.90821 4.95465 4.96206 5.08732 5.09121 5.14913 5.20544 5.22282 5.33588 5.36126 5.43940 5.52562 5.59674 5.64044 6.01370 6.11495 6.24732 6.38276 6.69233 6.91056 7.16286 7.40101 8.88386 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017400 B = 0.005882 C = 0.004914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.848381 B = 4759.268237 C = 5696.088676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.214 3.786 3 H 0.018 0.982 4 C -0.561 4.561 5 H 0.041 0.959 6 C 0.026 3.974 7 N -0.907 5.907 8 Si 0.949 3.051 9 H -0.278 1.278 10 H -0.277 1.277 11 H -0.274 1.274 12 N -0.673 5.673 13 C 0.073 3.927 14 H 0.058 0.942 15 C -0.125 4.125 16 C 0.516 3.484 17 O -0.575 6.575 18 N -0.608 5.608 19 C 0.097 3.903 20 C -0.132 4.132 21 C -0.087 4.087 22 C -0.144 4.144 23 C -0.124 4.124 24 C 0.108 3.892 25 H 0.063 0.937 26 H 0.028 0.972 27 H 0.020 0.980 28 H 0.265 0.735 29 H 0.328 0.672 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.040 0.960 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.042 0.958 43 H 0.088 0.912 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.547 -0.816 9.285 19.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.106 3.894 3 H 0.036 0.964 4 C -0.600 4.600 5 H 0.059 0.941 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.774 3.226 9 H -0.204 1.204 10 H -0.202 1.202 11 H -0.199 1.199 12 N -0.305 5.305 13 C -0.041 4.041 14 H 0.076 0.924 15 C -0.183 4.183 16 C 0.305 3.695 17 O -0.454 6.454 18 N -0.342 5.342 19 C -0.025 4.025 20 C -0.170 4.170 21 C -0.105 4.105 22 C -0.202 4.202 23 C -0.162 4.162 24 C -0.014 4.014 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.039 0.961 28 H 0.074 0.926 29 H 0.146 0.854 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.117 0.883 35 H 0.116 0.884 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.061 0.939 43 H 0.107 0.893 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.820 -0.726 9.859 19.510 hybrid contribution 0.267 -1.006 -1.889 2.157 sum 17.087 -1.733 7.970 18.934 Atomic orbital electron populations 1.21541 0.97613 0.98623 0.99654 1.19030 0.92565 0.93157 0.84644 0.96377 1.22025 1.32169 1.12627 0.93140 0.94056 1.25596 0.94932 0.95468 1.01456 1.69981 1.36832 1.23535 1.24242 0.85711 0.78653 0.78557 0.79630 1.20407 1.20223 1.19889 1.60854 1.20877 1.10061 1.38667 1.21418 0.90895 0.94801 0.96939 0.92412 1.21735 1.02855 0.94397 0.99285 1.20966 0.82532 0.85975 0.80040 1.90613 1.65619 1.38312 1.50848 1.48184 1.05609 1.22980 1.57392 1.22033 0.93707 0.87574 0.99185 1.21949 0.96942 1.00185 0.97894 1.21115 0.95011 0.94957 0.99427 1.21803 0.97493 1.01593 0.99269 1.21965 0.96256 0.98728 0.99301 1.21693 0.94200 0.89744 0.95751 0.91815 0.95322 0.96102 0.92612 0.85425 0.92333 0.92600 0.89376 0.89734 0.88335 0.88377 0.93815 0.89065 0.94035 0.91572 0.91621 0.88713 0.93875 0.89338 0.91562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 9.30 71.98 0.67 -5.26 16 2 C 0.21 11.07 2.38 44.17 0.11 11.18 16 3 H 0.02 1.00 6.98 -2.39 -0.02 0.98 16 4 C -0.56 -31.02 8.25 25.60 0.21 -30.81 16 5 H 0.04 2.33 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.44 5.30 84.66 0.45 1.89 16 7 N -0.91 -51.33 11.32 21.45 0.24 -51.09 16 8 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 N -0.67 -31.31 5.83 -477.16 -2.78 -34.10 16 13 C 0.07 2.83 1.98 44.17 0.09 2.91 16 14 H 0.06 2.37 6.56 -2.39 -0.02 2.36 16 15 C -0.12 -4.01 9.09 71.98 0.65 -3.36 16 16 C 0.52 19.13 6.86 87.66 0.60 19.73 16 17 O -0.57 -25.43 15.42 -3.01 -0.05 -25.47 16 18 N -0.61 -16.84 2.98 -819.73 -2.44 -19.28 16 19 C 0.10 2.02 5.45 86.21 0.47 2.49 16 20 C -0.13 -2.44 5.34 30.53 0.16 -2.28 16 21 C -0.09 -1.34 2.68 -10.77 -0.03 -1.37 16 22 C -0.14 -1.99 9.19 71.98 0.66 -1.33 16 23 C -0.12 -2.35 5.36 30.67 0.16 -2.19 16 24 C 0.11 2.51 6.42 86.36 0.55 3.06 16 25 H 0.06 3.49 6.06 -2.39 -0.01 3.48 16 26 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 29 H 0.33 16.37 7.48 -89.69 -0.67 15.70 16 30 H 0.06 2.03 7.25 -2.38 -0.02 2.01 16 31 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.09 2.14 6.27 -2.39 -0.01 2.12 16 33 H 0.08 1.96 4.67 -2.39 -0.01 1.95 16 34 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.07 1.88 7.04 -2.39 -0.02 1.86 16 Total: -1.00 -65.57 338.24 2.06 -63.51 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: 0.30 Total: 26.26 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 4.76 Total: -5.33 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -4.98 Total: -104.47 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.05 Total: -25.47 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -65.57 2.06 -63.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.304 kcal (2) G-P(sol) polarization free energy of solvation -65.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds