Wall clock time and date at job start Mon Mar 30 2020 01:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47230 * 2 1 4 4 N 1.46903 * 109.47127 * 119.99543 * 2 1 3 5 5 C 1.46903 * 110.99967 * 277.44466 * 4 2 1 6 6 H 1.08999 * 109.47084 * 344.37359 * 5 4 2 7 7 C 1.53006 * 109.46788 * 104.36560 * 5 4 2 8 8 C 1.50698 * 109.47532 * 224.36520 * 5 4 2 9 9 H 1.08003 * 119.99377 * 0.02562 * 8 5 4 10 10 C 1.37869 * 120.00176 * 179.97438 * 8 5 4 11 11 N 1.31516 * 120.00247 * 180.02562 * 10 8 5 12 12 Si 1.86804 * 120.00297 * 0.02562 * 10 8 5 13 13 H 1.48496 * 109.47027 * 89.99557 * 12 10 8 14 14 H 1.48499 * 109.47369 * 210.00010 * 12 10 8 15 15 H 1.48503 * 109.46707 * 329.99806 * 12 10 8 16 16 C 1.50702 * 109.47223 * 239.99325 * 2 1 3 17 17 O 1.21280 * 120.00048 * 262.07144 * 16 2 1 18 18 N 1.34772 * 119.99657 * 82.35459 * 16 2 1 19 19 C 1.46933 * 120.63037 * 173.72187 * 18 16 2 20 20 C 1.52763 * 109.00725 * 233.58442 * 19 18 16 21 21 C 1.53048 * 109.38164 * 305.58446 * 20 19 18 22 22 C 1.53000 * 109.44756 * 181.25634 * 21 20 19 23 23 C 1.53041 * 109.53761 * 61.24058 * 21 20 19 24 24 C 1.46926 * 120.63455 * 353.99618 * 18 16 2 25 25 H 1.09002 * 109.47206 * 185.49548 * 1 2 3 26 26 H 1.08997 * 109.46929 * 305.49496 * 1 2 3 27 27 H 1.09003 * 109.46776 * 65.49893 * 1 2 3 28 28 H 1.00902 * 111.00151 * 153.49725 * 4 2 1 29 29 H 1.08997 * 109.47075 * 65.71569 * 7 5 4 30 30 H 1.09005 * 109.46872 * 185.71177 * 7 5 4 31 31 H 1.09001 * 109.47094 * 305.71172 * 7 5 4 32 32 H 0.96998 * 120.00320 * 179.97438 * 11 10 8 33 33 H 1.09005 * 109.58411 * 353.41232 * 19 18 16 34 34 H 1.08995 * 109.58708 * 113.83875 * 19 18 16 35 35 H 1.08995 * 109.56397 * 185.55090 * 20 19 18 36 36 H 1.08994 * 109.36205 * 65.49319 * 20 19 18 37 37 H 1.08995 * 109.45841 * 301.22301 * 21 20 19 38 38 H 1.09005 * 109.46989 * 299.93706 * 22 21 20 39 39 H 1.08996 * 109.47003 * 59.93618 * 22 21 20 40 40 H 1.08999 * 109.47071 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.49886 * 178.68019 * 23 21 20 42 42 H 1.09005 * 109.52210 * 58.60343 * 23 21 20 43 43 H 1.08994 * 109.58721 * 246.15989 * 24 18 16 44 44 H 1.09007 * 109.58386 * 6.44339 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0276 0.2076 2.3605 6 1 1.9370 1.2394 2.0210 7 6 0.8510 -0.1326 3.2775 8 6 3.3196 0.0394 3.1178 9 1 4.0609 -0.6654 2.7710 10 6 3.5557 0.7858 4.2526 11 7 4.6834 0.6394 4.9132 12 14 2.2738 2.0053 4.8521 13 1 1.3463 1.3263 5.7922 14 1 2.9482 3.1305 5.5480 15 1 1.5079 2.5284 3.6923 16 6 2.0323 -0.7106 -1.2304 17 8 2.3711 -1.8732 -1.1634 18 7 2.1105 -0.0524 -2.4038 19 6 2.7248 -0.6865 -3.5784 20 6 3.8133 0.2336 -4.1283 21 6 3.2191 1.6177 -4.3995 22 6 4.3005 2.5314 -4.9797 23 6 2.6948 2.2148 -3.0916 24 6 1.5886 1.3151 -2.5315 25 1 -0.3634 -1.0230 0.0984 26 1 -0.3633 0.5967 0.8367 27 1 -0.3633 0.4262 -0.9352 28 1 2.9350 -1.0864 1.0413 29 1 0.9936 -1.1283 3.6974 30 1 0.7965 0.5978 4.0848 31 1 -0.0754 -0.1095 2.7036 32 1 4.8497 1.1648 5.7115 33 1 3.1662 -1.6404 -3.2896 34 1 1.9665 -0.8493 -4.3442 35 1 4.2075 -0.1812 -5.0559 36 1 4.6170 0.3197 -3.3971 37 1 2.3992 1.5276 -5.1120 38 1 5.1203 2.6220 -4.2671 39 1 4.6741 2.1062 -5.9112 40 1 3.8776 3.5172 -5.1734 41 1 2.2930 3.2102 -3.2814 42 1 3.5089 2.2827 -2.3700 43 1 0.7358 1.3189 -3.2102 44 1 1.2782 1.6806 -1.5525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:15 Heat of formation + Delta-G solvation = -40.359573 kcal Electronic energy + Delta-G solvation = -21712.167800 eV Core-core repulsion = 18664.121181 eV Total energy + Delta-G solvation = -3048.046619 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.28008 -37.88157 -36.08790 -34.03888 -32.91527 -31.48000 -30.60200 -28.43588 -27.97060 -24.90572 -24.38471 -23.47530 -22.31804 -20.52221 -19.82497 -18.89398 -17.29270 -16.65301 -15.78272 -15.40632 -14.96257 -14.88870 -14.47027 -14.13174 -13.89089 -13.76512 -13.49197 -13.05816 -12.84244 -12.65686 -12.32315 -12.06306 -12.04300 -11.84557 -11.68786 -11.54786 -11.37096 -11.23793 -11.08351 -10.84750 -10.65495 -10.63536 -10.54987 -10.05113 -9.56897 -9.29686 -8.98844 -8.61940 -8.60069 -7.53956 -6.11211 -4.11912 2.86257 3.04126 3.26394 3.33643 3.37014 4.36736 4.48415 4.50878 4.59817 4.77808 4.95443 4.96362 5.10045 5.22266 5.23095 5.28715 5.41230 5.45231 5.49084 5.55785 5.60757 5.66285 5.72110 5.79146 5.90467 5.90782 5.93333 5.97092 6.13337 6.22407 6.41178 6.47219 6.52879 6.60328 6.80311 6.81765 7.38892 7.46097 7.54503 7.93248 8.30660 8.42495 8.58472 8.93562 9.50328 11.01761 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.004974 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.221485 B = 5627.516510 C = 5986.958798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.070 3.930 3 H 0.059 0.941 4 N -0.660 5.660 5 C 0.181 3.819 6 H 0.010 0.990 7 C -0.137 4.137 8 C -0.529 4.529 9 H 0.078 0.922 10 C 0.073 3.927 11 N -0.897 5.897 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.298 1.298 15 H -0.269 1.269 16 C 0.518 3.482 17 O -0.525 6.525 18 N -0.617 5.617 19 C 0.112 3.888 20 C -0.130 4.130 21 C -0.091 4.091 22 C -0.147 4.147 23 C -0.133 4.133 24 C 0.105 3.895 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.350 0.650 29 H 0.056 0.944 30 H 0.033 0.967 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 5.091 -19.528 21.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.044 4.044 3 H 0.077 0.923 4 N -0.294 5.294 5 C 0.072 3.928 6 H 0.028 0.972 7 C -0.194 4.194 8 C -0.568 4.568 9 H 0.096 0.904 10 C -0.130 4.130 11 N -0.535 5.535 12 Si 0.723 3.277 13 H -0.204 1.204 14 H -0.226 1.226 15 H -0.194 1.194 16 C 0.306 3.694 17 O -0.400 6.400 18 N -0.353 5.353 19 C -0.010 4.010 20 C -0.169 4.169 21 C -0.110 4.110 22 C -0.204 4.204 23 C -0.172 4.172 24 C -0.019 4.019 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.171 0.829 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.724 4.218 -19.166 20.744 hybrid contribution 0.185 1.365 0.254 1.401 sum -6.539 5.583 -18.912 20.775 Atomic orbital electron populations 1.21817 0.93170 1.03276 1.01104 1.21600 0.97161 0.96279 0.89351 0.92345 1.60547 1.33201 1.34502 1.01185 1.19640 0.95024 0.90029 0.88057 0.97228 1.22124 0.97714 1.01096 0.98503 1.21326 1.00944 1.24121 1.10382 0.90449 1.24941 0.95326 0.96592 0.96111 1.69901 1.24222 1.41112 1.18261 0.86780 0.81184 0.80602 0.79130 1.20404 1.22575 1.19385 1.21015 0.77187 0.87034 0.84183 1.90675 1.48198 1.16381 1.84736 1.48136 1.60743 1.15694 1.10726 1.21430 0.95243 0.97252 0.87102 1.21925 0.98435 0.95162 1.01347 1.21109 0.98155 0.94939 0.96775 1.21828 0.98721 0.99177 1.00702 1.22020 0.99096 0.98668 0.97370 1.21812 0.96012 0.81537 1.02498 0.91373 0.91388 0.93102 0.82907 0.92445 0.94867 0.94851 0.92561 0.89073 0.92006 0.90867 0.91331 0.91171 0.92542 0.92730 0.92686 0.90707 0.91084 0.91475 0.89105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.69 37.16 0.32 -1.70 16 2 C 0.07 1.22 2.08 -68.86 -0.14 1.08 16 3 H 0.06 1.00 6.00 -51.93 -0.31 0.69 16 4 N -0.66 -14.32 5.97 -102.17 -0.61 -14.93 16 5 C 0.18 4.32 2.13 -68.86 -0.15 4.17 16 6 H 0.01 0.24 6.27 -51.93 -0.33 -0.08 16 7 C -0.14 -3.06 8.90 37.16 0.33 -2.73 16 8 C -0.53 -14.96 9.18 -34.44 -0.32 -15.27 16 9 H 0.08 2.39 7.62 -52.48 -0.40 1.99 16 10 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 11 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 12 Si 0.89 21.92 24.31 -169.99 -4.13 17.79 16 13 H -0.28 -6.68 6.92 56.52 0.39 -6.29 16 14 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 15 H -0.27 -6.25 6.53 56.52 0.37 -5.88 16 16 C 0.52 8.90 6.75 -10.99 -0.07 8.83 16 17 O -0.53 -10.90 15.62 5.56 0.09 -10.82 16 18 N -0.62 -8.18 2.98 -173.02 -0.52 -8.69 16 19 C 0.11 1.29 6.39 -3.93 -0.03 1.27 16 20 C -0.13 -1.25 5.34 -26.83 -0.14 -1.39 16 21 C -0.09 -0.76 2.68 -90.57 -0.24 -1.00 16 22 C -0.15 -1.10 9.19 37.16 0.34 -0.76 16 23 C -0.13 -1.22 5.36 -26.61 -0.14 -1.36 16 24 C 0.10 1.07 5.64 -3.71 -0.02 1.05 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.02 6.79 -51.93 -0.35 0.67 16 27 H 0.05 0.60 7.04 -51.93 -0.37 0.24 16 28 H 0.35 8.23 7.09 -39.29 -0.28 7.95 16 29 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.03 0.75 3.44 -51.93 -0.18 0.58 16 31 H 0.03 0.65 6.46 -51.93 -0.34 0.31 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 33 H 0.09 1.23 7.05 -51.93 -0.37 0.86 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.09 0.96 5.02 -51.93 -0.26 0.70 16 LS Contribution 329.96 15.07 4.97 4.97 Total: -1.00 -31.97 329.96 -7.21 -39.18 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -7.43 Total: 5.02 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -0.36 Total: -5.83 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.35 Total: -50.32 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.13 Total: 17.79 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.97 -7.21 -39.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.181 kcal (2) G-P(sol) polarization free energy of solvation -31.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds