Wall clock time and date at job start Mon Mar 30 2020 01:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47230 * 2 1 4 4 N 1.46903 * 109.47127 * 119.99543 * 2 1 3 5 5 C 1.46903 * 110.99967 * 277.44466 * 4 2 1 6 6 H 1.08999 * 109.47084 * 344.37359 * 5 4 2 7 7 C 1.53006 * 109.46788 * 104.36560 * 5 4 2 8 8 C 1.50698 * 109.47532 * 224.36520 * 5 4 2 9 9 H 1.08003 * 119.99377 * 0.02562 * 8 5 4 10 10 C 1.37869 * 120.00176 * 179.97438 * 8 5 4 11 11 N 1.31516 * 120.00247 * 180.02562 * 10 8 5 12 12 Si 1.86804 * 120.00297 * 0.02562 * 10 8 5 13 13 H 1.48496 * 109.47027 * 89.99557 * 12 10 8 14 14 H 1.48499 * 109.47369 * 210.00010 * 12 10 8 15 15 H 1.48503 * 109.46707 * 329.99806 * 12 10 8 16 16 C 1.50702 * 109.47223 * 239.99325 * 2 1 3 17 17 O 1.21280 * 120.00048 * 262.07144 * 16 2 1 18 18 N 1.34772 * 119.99657 * 82.35459 * 16 2 1 19 19 C 1.46933 * 120.63037 * 173.72187 * 18 16 2 20 20 C 1.52763 * 109.00725 * 233.58442 * 19 18 16 21 21 C 1.53048 * 109.38164 * 305.58446 * 20 19 18 22 22 C 1.53000 * 109.44756 * 181.25634 * 21 20 19 23 23 C 1.53041 * 109.53761 * 61.24058 * 21 20 19 24 24 C 1.46926 * 120.63455 * 353.99618 * 18 16 2 25 25 H 1.09002 * 109.47206 * 185.49548 * 1 2 3 26 26 H 1.08997 * 109.46929 * 305.49496 * 1 2 3 27 27 H 1.09003 * 109.46776 * 65.49893 * 1 2 3 28 28 H 1.00902 * 111.00151 * 153.49725 * 4 2 1 29 29 H 1.08997 * 109.47075 * 65.71569 * 7 5 4 30 30 H 1.09005 * 109.46872 * 185.71177 * 7 5 4 31 31 H 1.09001 * 109.47094 * 305.71172 * 7 5 4 32 32 H 0.96998 * 120.00320 * 179.97438 * 11 10 8 33 33 H 1.09005 * 109.58411 * 353.41232 * 19 18 16 34 34 H 1.08995 * 109.58708 * 113.83875 * 19 18 16 35 35 H 1.08995 * 109.56397 * 185.55090 * 20 19 18 36 36 H 1.08994 * 109.36205 * 65.49319 * 20 19 18 37 37 H 1.08995 * 109.45841 * 301.22301 * 21 20 19 38 38 H 1.09005 * 109.46989 * 299.93706 * 22 21 20 39 39 H 1.08996 * 109.47003 * 59.93618 * 22 21 20 40 40 H 1.08999 * 109.47071 * 179.97438 * 22 21 20 41 41 H 1.09000 * 109.49886 * 178.68019 * 23 21 20 42 42 H 1.09005 * 109.52210 * 58.60343 * 23 21 20 43 43 H 1.08994 * 109.58721 * 246.15989 * 24 18 16 44 44 H 1.09007 * 109.58386 * 6.44339 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0276 0.2076 2.3605 6 1 1.9370 1.2394 2.0210 7 6 0.8510 -0.1326 3.2775 8 6 3.3196 0.0394 3.1178 9 1 4.0609 -0.6654 2.7710 10 6 3.5557 0.7858 4.2526 11 7 4.6834 0.6394 4.9132 12 14 2.2738 2.0053 4.8521 13 1 1.3463 1.3263 5.7922 14 1 2.9482 3.1305 5.5480 15 1 1.5079 2.5284 3.6923 16 6 2.0323 -0.7106 -1.2304 17 8 2.3711 -1.8732 -1.1634 18 7 2.1105 -0.0524 -2.4038 19 6 2.7248 -0.6865 -3.5784 20 6 3.8133 0.2336 -4.1283 21 6 3.2191 1.6177 -4.3995 22 6 4.3005 2.5314 -4.9797 23 6 2.6948 2.2148 -3.0916 24 6 1.5886 1.3151 -2.5315 25 1 -0.3634 -1.0230 0.0984 26 1 -0.3633 0.5967 0.8367 27 1 -0.3633 0.4262 -0.9352 28 1 2.9350 -1.0864 1.0413 29 1 0.9936 -1.1283 3.6974 30 1 0.7965 0.5978 4.0848 31 1 -0.0754 -0.1095 2.7036 32 1 4.8497 1.1648 5.7115 33 1 3.1662 -1.6404 -3.2896 34 1 1.9665 -0.8493 -4.3442 35 1 4.2075 -0.1812 -5.0559 36 1 4.6170 0.3197 -3.3971 37 1 2.3992 1.5276 -5.1120 38 1 5.1203 2.6220 -4.2671 39 1 4.6741 2.1062 -5.9112 40 1 3.8776 3.5172 -5.1734 41 1 2.2930 3.2102 -3.2814 42 1 3.5089 2.2827 -2.3700 43 1 0.7358 1.3189 -3.2102 44 1 1.2782 1.6806 -1.5525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861024.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:14 Heat of formation + Delta-G solvation = -63.256580 kcal Electronic energy + Delta-G solvation = -21713.160688 eV Core-core repulsion = 18664.121181 eV Total energy + Delta-G solvation = -3049.039507 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.45657 -38.96738 -37.74475 -35.17049 -34.67583 -32.91821 -31.85766 -29.67447 -29.13015 -27.01470 -25.49762 -24.30198 -23.41698 -21.92991 -21.14836 -20.08351 -19.01848 -18.14053 -17.25913 -16.84460 -16.44928 -15.83923 -15.42221 -15.35270 -15.25154 -15.03501 -14.67747 -14.48803 -14.27901 -13.98534 -13.60782 -13.36617 -13.21967 -13.09715 -12.95006 -12.78091 -12.70139 -12.50307 -12.41264 -12.17802 -11.99612 -11.85305 -11.43180 -11.39519 -11.32104 -11.14372 -10.81793 -10.54931 -9.66923 -9.25507 -8.33415 -6.40322 1.32506 1.35596 1.47427 1.54297 1.94826 2.30371 3.01306 3.36086 3.47691 3.77558 3.84789 3.90487 4.09900 4.12968 4.27332 4.33054 4.43544 4.53035 4.54456 4.65670 4.72690 4.74691 4.81382 4.83693 4.87800 4.91133 4.95360 4.96631 5.02007 5.08308 5.09560 5.21016 5.30301 5.36071 5.50207 5.52559 5.57925 5.61124 5.95149 6.29915 6.35788 6.58451 6.73591 7.14206 7.26714 8.83409 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.004974 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.221485 B = 5627.516510 C = 5986.958798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.066 3.934 3 H 0.067 0.933 4 N -0.668 5.668 5 C 0.188 3.812 6 H 0.018 0.982 7 C -0.133 4.133 8 C -0.539 4.539 9 H 0.029 0.971 10 C 0.014 3.986 11 N -0.948 5.948 12 Si 0.958 3.042 13 H -0.266 1.266 14 H -0.297 1.297 15 H -0.240 1.240 16 C 0.513 3.487 17 O -0.574 6.574 18 N -0.609 5.609 19 C 0.108 3.892 20 C -0.126 4.126 21 C -0.087 4.087 22 C -0.145 4.145 23 C -0.132 4.132 24 C 0.097 3.903 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.332 0.668 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.268 0.732 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.041 0.959 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.045 0.955 43 H 0.099 0.901 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.330 7.496 -21.557 24.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.047 4.047 3 H 0.085 0.915 4 N -0.300 5.300 5 C 0.079 3.921 6 H 0.035 0.965 7 C -0.191 4.191 8 C -0.578 4.578 9 H 0.047 0.953 10 C -0.184 4.184 11 N -0.587 5.587 12 Si 0.784 3.216 13 H -0.191 1.191 14 H -0.225 1.225 15 H -0.164 1.164 16 C 0.301 3.699 17 O -0.453 6.453 18 N -0.343 5.343 19 C -0.014 4.014 20 C -0.164 4.164 21 C -0.105 4.105 22 C -0.202 4.202 23 C -0.170 4.170 24 C -0.025 4.025 25 H 0.074 0.926 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.151 0.849 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.118 0.882 42 H 0.064 0.936 43 H 0.117 0.883 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.662 6.658 -21.252 24.276 hybrid contribution 1.194 0.569 0.769 1.530 sum -8.468 7.227 -20.483 23.313 Atomic orbital electron populations 1.21794 0.90605 1.02961 1.03290 1.21758 0.99030 0.96015 0.87932 0.91539 1.60567 1.32064 1.34750 1.02651 1.19516 0.93249 0.90715 0.88640 0.96485 1.22045 0.98401 1.00158 0.98449 1.21618 1.02159 1.22949 1.11029 0.95263 1.25897 0.97600 0.98770 0.96131 1.70063 1.26763 1.42789 1.19127 0.85715 0.78511 0.77805 0.79555 1.19145 1.22464 1.16376 1.20998 0.77065 0.86555 0.85271 1.90653 1.50682 1.18424 1.85564 1.48218 1.59453 1.16699 1.09881 1.21586 0.96411 0.96490 0.86879 1.21901 0.97075 0.96061 1.01337 1.21114 0.98890 0.93768 0.96771 1.21805 0.98073 0.99712 1.00628 1.22027 0.98043 0.99795 0.97108 1.22130 0.97309 0.79658 1.03409 0.92580 0.90918 0.89496 0.84916 0.93990 0.94748 0.91472 0.92358 0.91820 0.89364 0.88904 0.93883 0.89126 0.93980 0.91831 0.91482 0.88213 0.93574 0.88299 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.47 8.69 71.98 0.63 -2.85 16 2 C 0.07 2.24 2.08 44.17 0.09 2.33 16 3 H 0.07 2.17 6.00 -2.39 -0.01 2.16 16 4 N -0.67 -29.41 5.97 -477.15 -2.85 -32.26 16 5 C 0.19 8.88 2.13 44.17 0.09 8.98 16 6 H 0.02 0.80 6.27 -2.39 -0.01 0.79 16 7 C -0.13 -5.70 8.90 71.98 0.64 -5.06 16 8 C -0.54 -31.53 9.18 25.60 0.23 -31.29 16 9 H 0.03 1.93 7.62 -2.91 -0.02 1.91 16 10 C 0.01 0.82 5.45 84.65 0.46 1.28 16 11 N -0.95 -59.98 13.96 21.44 0.30 -59.68 16 12 Si 0.96 44.38 24.31 68.60 1.67 46.05 16 13 H -0.27 -11.78 6.92 99.48 0.69 -11.09 16 14 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 15 H -0.24 -9.97 6.53 99.48 0.65 -9.32 16 16 C 0.51 17.63 6.75 87.66 0.59 18.23 16 17 O -0.57 -24.78 15.62 -3.03 -0.05 -24.83 16 18 N -0.61 -15.31 2.98 -819.71 -2.44 -17.75 16 19 C 0.11 2.38 6.39 86.22 0.55 2.93 16 20 C -0.13 -2.23 5.34 30.53 0.16 -2.07 16 21 C -0.09 -1.19 2.68 -10.76 -0.03 -1.22 16 22 C -0.14 -1.81 9.19 71.98 0.66 -1.14 16 23 C -0.13 -2.05 5.36 30.67 0.16 -1.88 16 24 C 0.10 1.67 5.64 86.36 0.49 2.16 16 25 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.07 1.90 6.79 -2.39 -0.02 1.88 16 27 H 0.09 1.71 7.04 -2.39 -0.02 1.69 16 28 H 0.33 16.56 7.09 -89.69 -0.64 15.92 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.03 1.46 3.44 -2.38 -0.01 1.45 16 31 H 0.07 2.41 6.46 -2.39 -0.02 2.39 16 32 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 33 H 0.06 1.76 7.05 -2.38 -0.02 1.75 16 34 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 39 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.09 1.59 5.02 -2.38 -0.01 1.58 16 Total: -1.00 -73.25 329.96 1.64 -71.62 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: 0.27 Total: 26.47 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 4.74 Total: -9.63 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.99 Total: -109.68 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.05 Total: -24.83 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.67 Total: 46.05 kcal Total: -73.25 1.64 -71.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861024.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.359 kcal (2) G-P(sol) polarization free energy of solvation -73.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds