Wall clock time and date at job start Mon Mar 30 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47122 * 2 1 4 4 C 1.50696 * 109.46708 * 240.00056 * 2 1 3 5 5 H 1.08000 * 119.99903 * 239.99739 * 4 2 1 6 6 C 1.37883 * 120.00205 * 60.00331 * 4 2 1 7 7 N 1.31509 * 119.99719 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47041 * 90.00044 * 8 6 4 10 10 H 1.48506 * 109.47293 * 210.00188 * 8 6 4 11 11 H 1.48497 * 109.47407 * 330.00204 * 8 6 4 12 12 N 1.46897 * 109.47113 * 120.00458 * 2 1 3 13 13 C 1.46905 * 110.99712 * 275.00059 * 12 2 1 14 14 H 1.08997 * 109.47417 * 34.99842 * 13 12 2 15 15 C 1.53001 * 109.46663 * 274.99496 * 13 12 2 16 16 C 1.50698 * 109.47103 * 155.00150 * 13 12 2 17 17 O 1.21286 * 120.00317 * 17.54611 * 16 13 12 18 18 N 1.34777 * 120.00215 * 197.55025 * 16 13 12 19 19 C 1.46921 * 120.63516 * 184.96117 * 18 16 13 20 20 C 1.52759 * 109.01289 * 233.58556 * 19 18 16 21 21 C 1.53047 * 109.38079 * 305.58974 * 20 19 18 22 22 C 1.52996 * 109.44728 * 181.25237 * 21 20 19 23 23 C 1.53041 * 109.53900 * 61.23579 * 21 20 19 24 24 C 1.46927 * 120.62705 * 5.24261 * 18 16 13 25 25 H 1.09002 * 109.47394 * 59.99721 * 1 2 3 26 26 H 1.08996 * 109.47089 * 299.99970 * 1 2 3 27 27 H 1.08996 * 109.47122 * 180.02562 * 1 2 3 28 28 H 0.97007 * 120.00215 * 180.02562 * 7 6 4 29 29 H 1.00906 * 111.00102 * 38.95151 * 12 2 1 30 30 H 1.09004 * 109.46629 * 179.97438 * 15 13 12 31 31 H 1.08992 * 109.47359 * 299.99581 * 15 13 12 32 32 H 1.08998 * 109.46667 * 60.00305 * 15 13 12 33 33 H 1.09008 * 109.58353 * 353.42146 * 19 18 16 34 34 H 1.08999 * 109.58853 * 113.83864 * 19 18 16 35 35 H 1.08996 * 109.56763 * 185.55317 * 20 19 18 36 36 H 1.09003 * 109.35621 * 65.49296 * 20 19 18 37 37 H 1.09000 * 109.45622 * 301.21544 * 21 20 19 38 38 H 1.09001 * 109.47453 * 299.93753 * 22 21 20 39 39 H 1.08997 * 109.47193 * 59.93616 * 22 21 20 40 40 H 1.08999 * 109.46956 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.49596 * 178.68474 * 23 21 20 42 42 H 1.08996 * 109.52080 * 58.60347 * 23 21 20 43 43 H 1.08999 * 109.58676 * 246.15804 * 24 18 16 44 44 H 1.08999 * 109.58977 * 6.43749 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3445 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1121 11 1 3.6306 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.2576 0.9328 2.2907 15 6 3.4112 0.9807 2.3224 16 6 1.9786 -0.5678 3.6258 17 8 2.1822 -1.7634 3.6182 18 7 1.6595 0.0540 4.7782 19 6 1.6602 -0.6808 6.0505 20 6 0.3070 -0.4936 6.7340 21 6 0.0098 1.0014 6.8714 22 6 -1.3308 1.1909 7.5839 23 6 -0.0564 1.6398 5.4821 24 6 1.2982 1.4782 4.7852 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7089 1.1616 -3.4844 29 1 1.4495 -1.4980 1.4099 30 1 3.4575 1.6600 3.1736 31 1 4.2359 0.2704 2.3787 32 1 3.4862 1.5522 1.3973 33 1 1.8284 -1.7408 5.8601 34 1 2.4490 -0.2937 6.6955 35 1 0.3309 -0.9521 7.7226 36 1 -0.4700 -0.9652 6.1323 37 1 0.8001 1.4768 7.4523 38 1 -2.1214 0.7159 7.0030 39 1 -1.2838 0.7362 8.5734 40 1 -1.5426 2.2556 7.6823 41 1 -0.2912 2.6998 5.5796 42 1 -0.8301 1.1486 4.8920 43 1 2.0568 2.0449 5.3249 44 1 1.2300 1.8429 3.7603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:20 Heat of formation + Delta-G solvation = -48.011978 kcal Electronic energy + Delta-G solvation = -21598.031672 eV Core-core repulsion = 18549.653220 eV Total energy + Delta-G solvation = -3048.378452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.24686 -37.85470 -35.90878 -34.03183 -32.91601 -31.37573 -30.26973 -28.35363 -26.98585 -25.15458 -24.33080 -23.47396 -22.33860 -20.57204 -19.78423 -18.76594 -17.19232 -16.33177 -15.60316 -15.33001 -14.94986 -14.64412 -14.49992 -14.28536 -13.75354 -13.70620 -13.34943 -12.76725 -12.65594 -12.51471 -12.09873 -12.03367 -11.82512 -11.75854 -11.50049 -11.36013 -11.28748 -11.09181 -10.90679 -10.73190 -10.63759 -10.57706 -10.45638 -10.10774 -9.92149 -9.25336 -8.94434 -8.57981 -8.33379 -7.23379 -5.96260 -3.98386 2.90956 3.07036 3.36047 3.41952 3.47973 4.46372 4.50159 4.50715 4.59260 4.83278 4.97629 5.11125 5.17310 5.22714 5.29008 5.35821 5.40911 5.44940 5.54731 5.57866 5.69739 5.70776 5.77352 5.81010 5.89613 5.93008 5.95247 6.11369 6.20706 6.33643 6.58913 6.66426 6.69505 6.84041 7.09169 7.30324 7.51787 7.75221 7.92432 8.27437 8.42494 8.56814 8.64853 9.09579 9.66760 11.11102 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033574 B = 0.004152 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.788508 B = 6741.446687 C = 7023.804458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.211 3.789 3 H 0.036 0.964 4 C -0.492 4.492 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.273 1.273 12 N -0.664 5.664 13 C 0.070 3.930 14 H 0.056 0.944 15 C -0.130 4.130 16 C 0.516 3.484 17 O -0.529 6.529 18 N -0.617 5.617 19 C 0.111 3.889 20 C -0.129 4.129 21 C -0.092 4.092 22 C -0.147 4.147 23 C -0.132 4.132 24 C 0.104 3.896 25 H 0.090 0.910 26 H 0.002 0.998 27 H 0.028 0.972 28 H 0.259 0.741 29 H 0.336 0.664 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.054 0.946 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 4.395 19.533 20.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.104 3.896 3 H 0.054 0.946 4 C -0.530 4.530 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.297 5.297 13 C -0.043 4.043 14 H 0.074 0.926 15 C -0.188 4.188 16 C 0.305 3.695 17 O -0.404 6.404 18 N -0.353 5.353 19 C -0.012 4.012 20 C -0.168 4.168 21 C -0.111 4.111 22 C -0.204 4.204 23 C -0.170 4.170 24 C -0.019 4.019 25 H 0.109 0.891 26 H 0.021 0.979 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.155 0.845 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.643 3.924 19.202 19.668 hybrid contribution -0.835 -0.181 -0.596 1.042 sum -2.479 3.743 18.607 19.140 Atomic orbital electron populations 1.22463 1.00821 0.99323 1.00339 1.19268 0.89453 0.94520 0.86401 0.94588 1.21149 1.30074 1.12408 0.89419 0.91798 1.24934 0.95374 0.95208 0.99004 1.69878 1.37520 1.23231 1.23301 0.86495 0.79322 0.79212 0.82364 1.20866 1.21418 1.19824 1.60795 1.58959 1.08204 1.01783 1.21485 0.98823 0.95040 0.88964 0.92603 1.21701 0.96145 0.99315 1.01671 1.21162 0.75163 0.88117 0.85078 1.90658 1.49084 1.14999 1.85676 1.48146 1.69269 1.10742 1.07122 1.21431 0.96691 0.98657 0.84416 1.21910 0.97816 0.96261 1.00766 1.21120 0.98034 0.95806 0.96102 1.21824 0.96904 1.01557 1.00103 1.22005 0.97614 1.01270 0.96108 1.21814 0.96059 0.81508 1.02495 0.89091 0.97903 0.95264 0.93124 0.84474 0.93402 0.91828 0.90916 0.89067 0.91958 0.90945 0.91502 0.91090 0.92660 0.92735 0.92652 0.90648 0.91327 0.91458 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.92 37.16 0.33 -3.80 16 2 C 0.21 5.34 2.38 -68.87 -0.16 5.17 16 3 H 0.04 0.97 7.11 -51.93 -0.37 0.60 16 4 C -0.49 -13.84 8.84 -34.44 -0.30 -14.15 16 5 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 6 C 0.05 1.54 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -25.65 11.32 55.43 0.63 -25.03 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.66 -15.04 5.83 -102.17 -0.60 -15.64 16 13 C 0.07 1.29 1.99 -68.86 -0.14 1.16 16 14 H 0.06 1.00 5.42 -51.93 -0.28 0.72 16 15 C -0.13 -2.16 9.22 37.16 0.34 -1.82 16 16 C 0.52 9.07 6.82 -10.99 -0.07 8.99 16 17 O -0.53 -11.11 15.41 5.55 0.09 -11.03 16 18 N -0.62 -8.30 2.98 -173.03 -0.52 -8.81 16 19 C 0.11 1.28 6.41 -3.94 -0.03 1.25 16 20 C -0.13 -1.21 5.34 -26.83 -0.14 -1.36 16 21 C -0.09 -0.76 2.68 -90.58 -0.24 -1.00 16 22 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 23 C -0.13 -1.20 5.36 -26.61 -0.14 -1.35 16 24 C 0.10 1.11 5.57 -3.71 -0.02 1.09 16 25 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 26 H 0.00 0.04 7.43 -51.93 -0.39 -0.34 16 27 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.34 7.84 7.51 -39.29 -0.30 7.54 16 30 H 0.05 0.63 7.26 -51.93 -0.38 0.25 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 1.30 7.43 -51.93 -0.39 0.91 16 33 H 0.09 1.22 7.00 -51.92 -0.36 0.86 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.04 5.31 -51.93 -0.28 0.76 16 LS Contribution 338.78 15.07 5.11 5.11 Total: -1.00 -30.73 338.78 -8.31 -39.05 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.67 Total: 4.65 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -0.33 Total: -5.08 kcal Atomic # 7 Polarization: -48.99 SS G_CDS: -0.48 Total: -49.48 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.03 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.73 -8.31 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.963 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds