Wall clock time and date at job start Mon Mar 30 2020 01:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47122 * 2 1 4 4 C 1.50696 * 109.46708 * 240.00056 * 2 1 3 5 5 H 1.08000 * 119.99903 * 239.99739 * 4 2 1 6 6 C 1.37883 * 120.00205 * 60.00331 * 4 2 1 7 7 N 1.31509 * 119.99719 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00028 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47041 * 90.00044 * 8 6 4 10 10 H 1.48506 * 109.47293 * 210.00188 * 8 6 4 11 11 H 1.48497 * 109.47407 * 330.00204 * 8 6 4 12 12 N 1.46897 * 109.47113 * 120.00458 * 2 1 3 13 13 C 1.46905 * 110.99712 * 275.00059 * 12 2 1 14 14 H 1.08997 * 109.47417 * 34.99842 * 13 12 2 15 15 C 1.53001 * 109.46663 * 274.99496 * 13 12 2 16 16 C 1.50698 * 109.47103 * 155.00150 * 13 12 2 17 17 O 1.21286 * 120.00317 * 17.54611 * 16 13 12 18 18 N 1.34777 * 120.00215 * 197.55025 * 16 13 12 19 19 C 1.46921 * 120.63516 * 184.96117 * 18 16 13 20 20 C 1.52759 * 109.01289 * 233.58556 * 19 18 16 21 21 C 1.53047 * 109.38079 * 305.58974 * 20 19 18 22 22 C 1.52996 * 109.44728 * 181.25237 * 21 20 19 23 23 C 1.53041 * 109.53900 * 61.23579 * 21 20 19 24 24 C 1.46927 * 120.62705 * 5.24261 * 18 16 13 25 25 H 1.09002 * 109.47394 * 59.99721 * 1 2 3 26 26 H 1.08996 * 109.47089 * 299.99970 * 1 2 3 27 27 H 1.08996 * 109.47122 * 180.02562 * 1 2 3 28 28 H 0.97007 * 120.00215 * 180.02562 * 7 6 4 29 29 H 1.00906 * 111.00102 * 38.95151 * 12 2 1 30 30 H 1.09004 * 109.46629 * 179.97438 * 15 13 12 31 31 H 1.08992 * 109.47359 * 299.99581 * 15 13 12 32 32 H 1.08998 * 109.46667 * 60.00305 * 15 13 12 33 33 H 1.09008 * 109.58353 * 353.42146 * 19 18 16 34 34 H 1.08999 * 109.58853 * 113.83864 * 19 18 16 35 35 H 1.08996 * 109.56763 * 185.55317 * 20 19 18 36 36 H 1.09003 * 109.35621 * 65.49296 * 20 19 18 37 37 H 1.09000 * 109.45622 * 301.21544 * 21 20 19 38 38 H 1.09001 * 109.47453 * 299.93753 * 22 21 20 39 39 H 1.08997 * 109.47193 * 59.93616 * 22 21 20 40 40 H 1.08999 * 109.46956 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.49596 * 178.68474 * 23 21 20 42 42 H 1.08996 * 109.52080 * 58.60347 * 23 21 20 43 43 H 1.08999 * 109.58676 * 246.15804 * 24 18 16 44 44 H 1.08999 * 109.58977 * 6.43749 * 24 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3223 -1.1195 -4.0080 9 1 1.3445 -2.1614 -4.4124 10 1 2.4872 -0.1401 -5.1121 11 1 3.6306 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0824 0.2225 2.3469 14 1 1.2576 0.9328 2.2907 15 6 3.4112 0.9807 2.3224 16 6 1.9786 -0.5678 3.6258 17 8 2.1822 -1.7634 3.6182 18 7 1.6595 0.0540 4.7782 19 6 1.6602 -0.6808 6.0505 20 6 0.3070 -0.4936 6.7340 21 6 0.0098 1.0014 6.8714 22 6 -1.3308 1.1909 7.5839 23 6 -0.0564 1.6398 5.4821 24 6 1.2982 1.4782 4.7852 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7089 1.1616 -3.4844 29 1 1.4495 -1.4980 1.4099 30 1 3.4575 1.6600 3.1736 31 1 4.2359 0.2704 2.3787 32 1 3.4862 1.5522 1.3973 33 1 1.8284 -1.7408 5.8601 34 1 2.4490 -0.2937 6.6955 35 1 0.3309 -0.9521 7.7226 36 1 -0.4700 -0.9652 6.1323 37 1 0.8001 1.4768 7.4523 38 1 -2.1214 0.7159 7.0030 39 1 -1.2838 0.7362 8.5734 40 1 -1.5426 2.2556 7.6823 41 1 -0.2912 2.6998 5.5796 42 1 -0.8301 1.1486 4.8920 43 1 2.0568 2.0449 5.3249 44 1 1.2300 1.8429 3.7603 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861032.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:20 Heat of formation + Delta-G solvation = -67.692874 kcal Electronic energy + Delta-G solvation = -21598.885099 eV Core-core repulsion = 18549.653220 eV Total energy + Delta-G solvation = -3049.231879 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45476 -38.95336 -37.64079 -35.17920 -34.66226 -32.59584 -31.70832 -29.25401 -28.69777 -27.25781 -25.54097 -24.31122 -23.51646 -21.98517 -21.11058 -19.97511 -18.71847 -17.97282 -17.17595 -16.65246 -16.53362 -15.91742 -15.43341 -15.28568 -15.02760 -14.88813 -14.45576 -14.38075 -14.09433 -13.76206 -13.50369 -13.24282 -13.19978 -12.97892 -12.83559 -12.76383 -12.67159 -12.57235 -12.35242 -12.18393 -12.09886 -11.91610 -11.83090 -11.40083 -11.30967 -11.07257 -10.59841 -10.47782 -9.66657 -9.03228 -8.10143 -6.19853 1.43033 1.43591 1.54389 1.55567 1.94448 2.45129 3.18424 3.46508 3.53055 3.76754 3.85808 3.92041 4.10793 4.13949 4.30290 4.33723 4.45676 4.54828 4.67190 4.73201 4.75847 4.77974 4.83691 4.85038 4.89835 4.91867 4.96823 5.08250 5.09261 5.10144 5.21262 5.29750 5.36733 5.37787 5.52797 5.59662 5.68098 5.80283 6.22487 6.32482 6.60994 6.71728 6.92008 7.14513 7.49371 8.95631 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033574 B = 0.004152 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.788508 B = 6741.446687 C = 7023.804458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.219 3.781 3 H 0.018 0.982 4 C -0.517 4.517 5 H 0.048 0.952 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.274 1.274 12 N -0.675 5.675 13 C 0.069 3.931 14 H 0.066 0.934 15 C -0.122 4.122 16 C 0.515 3.485 17 O -0.574 6.574 18 N -0.607 5.607 19 C 0.106 3.894 20 C -0.124 4.124 21 C -0.088 4.088 22 C -0.144 4.144 23 C -0.129 4.129 24 C 0.096 3.904 25 H 0.068 0.932 26 H 0.026 0.974 27 H 0.023 0.977 28 H 0.262 0.738 29 H 0.329 0.671 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.048 0.952 43 H 0.096 0.904 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.391 5.690 21.250 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.111 3.889 3 H 0.036 0.964 4 C -0.556 4.556 5 H 0.066 0.934 6 C -0.185 4.185 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.205 1.205 11 H -0.199 1.199 12 N -0.308 5.308 13 C -0.045 4.045 14 H 0.083 0.917 15 C -0.180 4.180 16 C 0.303 3.697 17 O -0.453 6.453 18 N -0.341 5.341 19 C -0.016 4.016 20 C -0.162 4.162 21 C -0.106 4.106 22 C -0.201 4.201 23 C -0.167 4.167 24 C -0.026 4.026 25 H 0.086 0.914 26 H 0.045 0.955 27 H 0.042 0.958 28 H 0.071 0.929 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.067 0.933 43 H 0.114 0.886 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.687 5.263 20.963 21.679 hybrid contribution -0.839 -0.535 -1.038 1.438 sum -2.526 4.728 19.925 20.634 Atomic orbital electron populations 1.22267 1.00144 0.98904 1.00307 1.19021 0.89815 0.93269 0.86837 0.96363 1.21399 1.30574 1.12435 0.91192 0.93385 1.25631 0.95425 0.95857 1.01559 1.69975 1.37864 1.23973 1.24048 0.85553 0.78674 0.78302 0.79042 1.20319 1.20502 1.19880 1.60670 1.58596 1.08735 1.02757 1.21560 1.00079 0.94572 0.88240 0.91686 1.21646 0.94563 0.99215 1.02615 1.20935 0.75400 0.87429 0.85888 1.90638 1.51638 1.16657 1.86364 1.48196 1.67271 1.12038 1.06547 1.21620 0.98899 0.97273 0.83757 1.21883 0.95658 0.97539 1.01100 1.21123 0.99211 0.94549 0.95766 1.21796 0.95869 1.02245 1.00226 1.22006 0.95904 1.02597 0.96210 1.22105 0.97897 0.79704 1.02858 0.91351 0.95511 0.95781 0.92874 0.85269 0.89429 0.93177 0.92454 0.91510 0.89441 0.88867 0.93569 0.89334 0.93722 0.91795 0.91629 0.88392 0.93285 0.88576 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.70 8.92 71.98 0.64 -7.06 16 2 C 0.22 11.31 2.38 44.17 0.11 11.41 16 3 H 0.02 1.01 7.11 -2.39 -0.02 0.99 16 4 C -0.52 -29.77 8.84 25.60 0.23 -29.55 16 5 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -52.72 11.32 21.45 0.24 -52.48 16 8 Si 0.96 44.98 29.54 68.60 2.03 47.00 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 12 N -0.68 -31.34 5.83 -477.16 -2.78 -34.13 16 13 C 0.07 2.52 1.99 44.17 0.09 2.61 16 14 H 0.07 2.28 5.42 -2.39 -0.01 2.27 16 15 C -0.12 -3.99 9.22 71.98 0.66 -3.33 16 16 C 0.52 18.06 6.82 87.66 0.60 18.66 16 17 O -0.57 -24.74 15.41 -3.05 -0.05 -24.79 16 18 N -0.61 -15.44 2.98 -819.75 -2.44 -17.88 16 19 C 0.11 2.28 6.41 86.22 0.55 2.83 16 20 C -0.12 -2.07 5.34 30.53 0.16 -1.90 16 21 C -0.09 -1.16 2.68 -10.77 -0.03 -1.19 16 22 C -0.14 -1.66 9.19 71.98 0.66 -1.00 16 23 C -0.13 -2.00 5.36 30.67 0.16 -1.84 16 24 C 0.10 1.77 5.57 86.36 0.48 2.25 16 25 H 0.07 3.68 6.07 -2.39 -0.01 3.67 16 26 H 0.03 1.13 7.43 -2.39 -0.02 1.11 16 27 H 0.02 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.26 14.28 8.31 -92.70 -0.77 13.51 16 29 H 0.33 15.87 7.51 -89.69 -0.67 15.20 16 30 H 0.09 2.11 7.26 -2.38 -0.02 2.09 16 31 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 2.04 7.43 -2.39 -0.02 2.02 16 33 H 0.07 1.79 7.00 -2.38 -0.02 1.77 16 34 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.08 1.71 5.31 -2.39 -0.01 1.69 16 Total: -1.00 -67.62 338.78 2.06 -65.57 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.29 Total: 23.59 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: 4.77 Total: -6.87 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -4.98 Total: -104.49 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.62 2.06 -65.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861032.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.127 kcal (2) G-P(sol) polarization free energy of solvation -67.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds