Wall clock time and date at job start Mon Mar 30 2020 01:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46975 * 2 1 4 4 C 1.50697 * 109.47255 * 240.00030 * 2 1 3 5 5 H 1.08007 * 119.99653 * 274.99958 * 4 2 1 6 6 C 1.37873 * 120.00315 * 94.99372 * 4 2 1 7 7 N 1.31512 * 120.00418 * 184.91930 * 6 4 2 8 8 Si 1.86807 * 119.99722 * 4.91774 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83193 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82819 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83131 * 8 6 4 12 12 N 1.46896 * 109.47166 * 119.99624 * 2 1 3 13 13 C 1.46903 * 111.00212 * 275.00003 * 12 2 1 14 14 C 1.50704 * 109.46857 * 179.97438 * 13 12 2 15 15 O 1.21280 * 120.00210 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99565 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99669 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47197 * 275.00093 * 17 16 14 19 19 C 1.52997 * 109.47467 * 300.00115 * 18 17 16 20 20 C 1.53000 * 109.47179 * 300.00245 * 19 18 17 21 21 C 1.52995 * 109.47496 * 179.97438 * 20 19 18 22 22 C 1.53007 * 109.47303 * 59.99497 * 20 19 18 23 23 C 1.52999 * 109.46902 * 300.00237 * 22 20 19 24 24 H 1.08996 * 109.47186 * 55.04501 * 1 2 3 25 25 H 1.09002 * 109.46887 * 295.04515 * 1 2 3 26 26 H 1.08994 * 109.47301 * 175.04800 * 1 2 3 27 27 H 0.96995 * 120.00035 * 180.02562 * 7 6 4 28 28 H 1.00904 * 111.00018 * 38.95409 * 12 2 1 29 29 H 1.08997 * 109.47391 * 299.99666 * 13 12 2 30 30 H 1.08998 * 109.46982 * 60.00418 * 13 12 2 31 31 H 0.96993 * 120.00329 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47191 * 35.00427 * 17 16 14 33 33 H 1.09003 * 109.47086 * 60.00432 * 18 17 16 34 34 H 1.09006 * 109.47292 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47326 * 179.97438 * 19 18 17 36 36 H 1.09007 * 109.46616 * 59.99657 * 19 18 17 37 37 H 1.09007 * 109.46948 * 300.00042 * 20 19 18 38 38 H 1.09007 * 109.46702 * 300.00160 * 21 20 19 39 39 H 1.09000 * 109.47002 * 59.99726 * 21 20 19 40 40 H 1.08997 * 109.47142 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.46981 * 180.02562 * 22 20 19 42 42 H 1.08997 * 109.46852 * 59.99835 * 22 20 19 43 43 H 1.08997 * 109.47558 * 299.99568 * 23 22 20 44 44 H 1.09003 * 109.47262 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3581 7 7 2.7058 -0.6132 -3.4622 8 14 2.3133 1.8791 -2.3175 9 1 3.5989 2.3950 -1.7823 10 1 2.1056 2.3990 -3.6929 11 1 1.1984 2.3275 -1.4451 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2227 2.3469 14 6 2.5874 -0.5217 3.5560 15 8 2.8678 -1.6985 3.4703 16 7 2.7283 0.1207 4.7325 17 6 3.2197 -0.6029 5.9078 18 6 2.0502 -1.3064 6.5994 19 6 1.0158 -0.2670 7.0360 20 6 1.6641 0.7204 8.0084 21 6 0.6300 1.7602 8.4446 22 6 2.8337 1.4240 7.3168 23 6 3.8680 0.3845 6.8803 24 1 -0.3633 0.5888 -0.8422 25 1 -0.3633 0.4351 0.9311 26 1 -0.3633 -1.0238 -0.0887 27 1 2.9368 -0.1049 -4.2554 28 1 1.4496 -1.4978 1.4101 29 1 2.7589 1.0463 2.1183 30 1 1.0871 0.6164 2.5525 31 1 2.5045 1.0619 4.8010 32 1 3.9565 -1.3434 5.5968 33 1 1.5883 -2.0098 5.9066 34 1 2.4158 -1.8451 7.4736 35 1 0.1825 -0.7682 7.5282 36 1 0.6503 0.2713 6.1614 37 1 2.0298 0.1821 8.8829 38 1 0.2648 2.2984 7.5698 39 1 -0.2034 1.2593 8.9371 40 1 1.0920 2.4639 9.1370 41 1 3.2957 2.1270 8.0098 42 1 2.4681 1.9622 6.4424 43 1 4.2336 -0.1538 7.7547 44 1 4.7010 0.8856 6.3872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:52 Heat of formation + Delta-G solvation = -60.900141 kcal Electronic energy + Delta-G solvation = -21078.021261 eV Core-core repulsion = 18029.083937 eV Total energy + Delta-G solvation = -3048.937324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.20644 -38.30253 -35.86380 -34.27946 -32.37358 -31.40364 -31.06115 -29.69833 -26.64061 -25.37559 -24.82331 -22.91652 -21.47058 -20.75746 -20.02009 -19.17721 -17.42582 -16.57945 -15.95029 -15.61070 -15.16168 -14.56649 -14.51660 -14.31199 -13.96395 -13.66250 -13.51498 -13.23806 -12.79173 -12.50300 -12.46653 -12.24002 -12.15646 -11.93872 -11.81563 -11.70159 -11.43036 -11.23974 -11.04307 -10.76984 -10.71603 -10.44049 -10.26916 -10.17373 -9.76428 -9.47265 -9.09725 -8.92191 -8.49787 -7.36145 -6.01960 -3.99080 2.97897 3.27444 3.31063 3.35296 3.37234 4.40946 4.43274 4.43630 4.48132 4.81047 4.94622 5.00944 5.09213 5.15236 5.24317 5.27885 5.29412 5.36900 5.43341 5.46683 5.54184 5.71306 5.72901 5.76712 5.78825 5.84097 5.85968 5.98612 6.03098 6.14886 6.18867 6.22300 6.35581 6.58389 6.62769 6.75582 7.14322 7.60177 7.72089 7.96778 8.37144 8.55421 8.70112 9.07965 9.60005 11.11874 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030247 B = 0.003789 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.490827 B = 7387.863524 C = 7567.598243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.181 3.819 3 H 0.036 0.964 4 C -0.490 4.490 5 H 0.078 0.922 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.657 5.657 13 C 0.038 3.962 14 C 0.513 3.487 15 O -0.522 6.522 16 N -0.733 5.733 17 C 0.147 3.853 18 C -0.131 4.131 19 C -0.113 4.113 20 C -0.092 4.092 21 C -0.148 4.148 22 C -0.116 4.116 23 C -0.127 4.127 24 H 0.050 0.950 25 H 0.019 0.981 26 H 0.050 0.950 27 H 0.263 0.737 28 H 0.338 0.662 29 H 0.092 0.908 30 H 0.045 0.955 31 H 0.395 0.605 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.075 0.925 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.516 6.688 24.959 25.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.073 3.927 3 H 0.054 0.946 4 C -0.529 4.529 5 H 0.096 0.904 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.704 3.296 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.194 1.194 12 N -0.289 5.289 13 C -0.095 4.095 14 C 0.299 3.701 15 O -0.396 6.396 16 N -0.388 5.388 17 C 0.042 3.958 18 C -0.169 4.169 19 C -0.150 4.150 20 C -0.111 4.111 21 C -0.205 4.205 22 C -0.153 4.153 23 C -0.165 4.165 24 H 0.069 0.931 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.156 0.844 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.230 0.770 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.094 0.906 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.578 5.918 24.510 25.264 hybrid contribution -1.059 1.655 0.162 1.971 sum -2.636 7.573 24.672 25.942 Atomic orbital electron populations 1.22663 1.00920 1.00986 0.98569 1.19704 0.89432 0.94603 0.89010 0.94573 1.20861 1.42549 0.95890 0.93574 0.90417 1.24984 0.94826 0.98013 0.95403 1.69890 1.46665 1.35603 1.01693 0.86901 0.78802 0.86853 0.77065 1.20171 1.21512 1.19369 1.60700 1.58841 1.08089 1.01289 1.21890 0.99762 0.97088 0.90803 1.20971 0.77323 0.87916 0.83859 1.90684 1.48408 1.16073 1.84443 1.46170 1.69178 1.13884 1.09543 1.20840 0.95744 0.94248 0.84978 1.21915 0.96641 0.98058 1.00306 1.21556 0.97786 0.96778 0.98901 1.21158 0.95430 0.96277 0.98228 1.21837 0.98779 0.98755 1.01175 1.21603 0.95820 0.97667 1.00224 1.21823 0.98181 0.97363 0.99126 0.93074 0.96231 0.93069 0.92677 0.84377 0.88974 0.93693 0.76984 0.89535 0.91264 0.91386 0.92194 0.91832 0.91260 0.92668 0.92778 0.92827 0.91742 0.92006 0.90601 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 9.16 37.16 0.34 -3.25 16 2 C 0.18 4.27 2.23 -68.87 -0.15 4.11 16 3 H 0.04 0.86 4.95 -51.92 -0.26 0.60 16 4 C -0.49 -14.06 9.19 -34.44 -0.32 -14.37 16 5 H 0.08 2.47 8.06 -52.48 -0.42 2.05 16 6 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 7 N -0.90 -27.89 13.96 55.43 0.77 -27.11 16 8 Si 0.88 21.46 26.99 -169.99 -4.59 16.87 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.27 -6.18 6.82 56.52 0.39 -5.80 16 12 N -0.66 -14.24 5.86 -109.22 -0.64 -14.88 16 13 C 0.04 0.63 5.97 -4.97 -0.03 0.60 16 14 C 0.51 8.25 7.83 -10.98 -0.09 8.16 16 15 O -0.52 -10.53 15.86 5.56 0.09 -10.44 16 16 N -0.73 -8.49 4.23 -53.80 -0.23 -8.72 16 17 C 0.15 1.54 2.78 -67.93 -0.19 1.35 16 18 C -0.13 -1.29 5.60 -26.73 -0.15 -1.44 16 19 C -0.11 -0.95 5.05 -26.73 -0.13 -1.09 16 20 C -0.09 -0.64 2.72 -90.62 -0.25 -0.89 16 21 C -0.15 -0.95 9.19 37.16 0.34 -0.61 16 22 C -0.12 -0.78 5.03 -26.73 -0.13 -0.92 16 23 C -0.13 -0.98 5.61 -26.73 -0.15 -1.13 16 24 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.02 0.34 7.35 -51.93 -0.38 -0.04 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.34 7.26 8.18 -39.29 -0.32 6.94 16 29 H 0.09 1.48 8.06 -51.93 -0.42 1.06 16 30 H 0.05 0.67 7.36 -51.93 -0.38 0.29 16 31 H 0.40 3.65 6.87 -40.82 -0.28 3.37 16 32 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.59 7.60 -51.93 -0.39 0.20 16 37 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.42 6.50 -51.93 -0.34 0.08 16 43 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 342.30 15.07 5.16 5.16 Total: -1.00 -32.65 342.30 -8.26 -40.91 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.81 Total: 5.77 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.01 Total: -7.56 kcal Atomic # 7 Polarization: -50.62 SS G_CDS: -0.09 Total: -50.71 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.59 Total: 16.87 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.65 -8.26 -40.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.993 kcal (2) G-P(sol) polarization free energy of solvation -32.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds