Wall clock time and date at job start Mon Mar 30 2020 01:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09009 * 109.46975 * 2 1 4 4 C 1.50697 * 109.47255 * 240.00030 * 2 1 3 5 5 H 1.08007 * 119.99653 * 274.99958 * 4 2 1 6 6 C 1.37873 * 120.00315 * 94.99372 * 4 2 1 7 7 N 1.31512 * 120.00418 * 184.91930 * 6 4 2 8 8 Si 1.86807 * 119.99722 * 4.91774 * 6 4 2 9 9 H 1.48503 * 109.47044 * 84.83193 * 8 6 4 10 10 H 1.48503 * 109.47110 * 204.82819 * 8 6 4 11 11 H 1.48499 * 109.47347 * 324.83131 * 8 6 4 12 12 N 1.46896 * 109.47166 * 119.99624 * 2 1 3 13 13 C 1.46903 * 111.00212 * 275.00003 * 12 2 1 14 14 C 1.50704 * 109.46857 * 179.97438 * 13 12 2 15 15 O 1.21280 * 120.00210 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99565 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99669 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47197 * 275.00093 * 17 16 14 19 19 C 1.52997 * 109.47467 * 300.00115 * 18 17 16 20 20 C 1.53000 * 109.47179 * 300.00245 * 19 18 17 21 21 C 1.52995 * 109.47496 * 179.97438 * 20 19 18 22 22 C 1.53007 * 109.47303 * 59.99497 * 20 19 18 23 23 C 1.52999 * 109.46902 * 300.00237 * 22 20 19 24 24 H 1.08996 * 109.47186 * 55.04501 * 1 2 3 25 25 H 1.09002 * 109.46887 * 295.04515 * 1 2 3 26 26 H 1.08994 * 109.47301 * 175.04800 * 1 2 3 27 27 H 0.96995 * 120.00035 * 180.02562 * 7 6 4 28 28 H 1.00904 * 111.00018 * 38.95409 * 12 2 1 29 29 H 1.08997 * 109.47391 * 299.99666 * 13 12 2 30 30 H 1.08998 * 109.46982 * 60.00418 * 13 12 2 31 31 H 0.96993 * 120.00329 * 0.02562 * 16 14 13 32 32 H 1.08998 * 109.47191 * 35.00427 * 17 16 14 33 33 H 1.09003 * 109.47086 * 60.00432 * 18 17 16 34 34 H 1.09006 * 109.47292 * 179.97438 * 18 17 16 35 35 H 1.09000 * 109.47326 * 179.97438 * 19 18 17 36 36 H 1.09007 * 109.46616 * 59.99657 * 19 18 17 37 37 H 1.09007 * 109.46948 * 300.00042 * 20 19 18 38 38 H 1.09007 * 109.46702 * 300.00160 * 21 20 19 39 39 H 1.09000 * 109.47002 * 59.99726 * 21 20 19 40 40 H 1.08997 * 109.47142 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.46981 * 180.02562 * 22 20 19 42 42 H 1.08997 * 109.46852 * 59.99835 * 22 20 19 43 43 H 1.08997 * 109.47558 * 299.99568 * 23 22 20 44 44 H 1.09003 * 109.47262 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.1355 -1.7855 -1.2289 6 6 2.3602 0.0120 -2.3581 7 7 2.7058 -0.6132 -3.4622 8 14 2.3133 1.8791 -2.3175 9 1 3.5989 2.3950 -1.7823 10 1 2.1056 2.3990 -3.6929 11 1 1.1984 2.3275 -1.4451 12 7 2.0197 -0.6924 1.1994 13 6 2.0825 0.2227 2.3469 14 6 2.5874 -0.5217 3.5560 15 8 2.8678 -1.6985 3.4703 16 7 2.7283 0.1207 4.7325 17 6 3.2197 -0.6029 5.9078 18 6 2.0502 -1.3064 6.5994 19 6 1.0158 -0.2670 7.0360 20 6 1.6641 0.7204 8.0084 21 6 0.6300 1.7602 8.4446 22 6 2.8337 1.4240 7.3168 23 6 3.8680 0.3845 6.8803 24 1 -0.3633 0.5888 -0.8422 25 1 -0.3633 0.4351 0.9311 26 1 -0.3633 -1.0238 -0.0887 27 1 2.9368 -0.1049 -4.2554 28 1 1.4496 -1.4978 1.4101 29 1 2.7589 1.0463 2.1183 30 1 1.0871 0.6164 2.5525 31 1 2.5045 1.0619 4.8010 32 1 3.9565 -1.3434 5.5968 33 1 1.5883 -2.0098 5.9066 34 1 2.4158 -1.8451 7.4736 35 1 0.1825 -0.7682 7.5282 36 1 0.6503 0.2713 6.1614 37 1 2.0298 0.1821 8.8829 38 1 0.2648 2.2984 7.5698 39 1 -0.2034 1.2593 8.9371 40 1 1.0920 2.4639 9.1370 41 1 3.2957 2.1270 8.0098 42 1 2.4681 1.9622 6.4424 43 1 4.2336 -0.1538 7.7547 44 1 4.7010 0.8856 6.3872 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602863683.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:52 Heat of formation + Delta-G solvation = -84.172512 kcal Electronic energy + Delta-G solvation = -21079.030427 eV Core-core repulsion = 18029.083937 eV Total energy + Delta-G solvation = -3049.946490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.22349 -39.33641 -37.54907 -35.22712 -34.43855 -32.46515 -31.72622 -31.25167 -27.54632 -27.22342 -26.21984 -23.58477 -22.28281 -21.89205 -21.74819 -20.01954 -19.24785 -18.08746 -17.01087 -16.66950 -16.52489 -16.08117 -15.57347 -15.26595 -15.13999 -14.88481 -14.56382 -14.48485 -14.08418 -13.94686 -13.77677 -13.51363 -13.17613 -12.91795 -12.90263 -12.76913 -12.58842 -12.40140 -12.34318 -12.05226 -12.00831 -11.74873 -11.38190 -11.25108 -11.09171 -10.96183 -10.79163 -10.63015 -9.97377 -9.00214 -8.24108 -6.27730 1.36358 1.39724 1.49344 1.71451 2.20107 2.38006 3.07216 3.66897 3.73269 3.81966 3.84266 3.96186 4.18576 4.25074 4.34667 4.41497 4.50918 4.52009 4.57417 4.59441 4.67114 4.71067 4.73904 4.79777 4.89422 5.02341 5.02999 5.09617 5.14470 5.17162 5.23669 5.31093 5.42161 5.44335 5.48092 5.59421 5.64900 5.67945 6.01905 6.54226 6.66248 6.75134 6.78908 7.35680 7.37256 8.94078 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030247 B = 0.003789 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.490827 B = 7387.863524 C = 7567.598243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.186 3.814 3 H 0.046 0.954 4 C -0.502 4.502 5 H 0.022 0.978 6 C 0.004 3.996 7 N -0.955 5.955 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.288 1.288 11 H -0.236 1.236 12 N -0.683 5.683 13 C 0.038 3.962 14 C 0.514 3.486 15 O -0.573 6.573 16 N -0.710 5.710 17 C 0.143 3.857 18 C -0.127 4.127 19 C -0.109 4.109 20 C -0.088 4.088 21 C -0.147 4.147 22 C -0.113 4.113 23 C -0.119 4.119 24 H 0.047 0.953 25 H 0.058 0.942 26 H 0.041 0.959 27 H 0.265 0.735 28 H 0.334 0.666 29 H 0.106 0.894 30 H 0.078 0.922 31 H 0.411 0.589 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.062 0.938 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.088 0.912 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.226 10.124 27.698 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.077 3.923 3 H 0.064 0.936 4 C -0.541 4.541 5 H 0.041 0.959 6 C -0.193 4.193 7 N -0.596 5.596 8 Si 0.773 3.227 9 H -0.193 1.193 10 H -0.214 1.214 11 H -0.159 1.159 12 N -0.314 5.314 13 C -0.095 4.095 14 C 0.301 3.699 15 O -0.451 6.451 16 N -0.365 5.365 17 C 0.039 3.961 18 C -0.166 4.166 19 C -0.146 4.146 20 C -0.107 4.107 21 C -0.204 4.204 22 C -0.151 4.151 23 C -0.157 4.157 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.152 0.848 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.249 0.751 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.107 0.893 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.304 9.394 27.315 28.977 hybrid contribution -0.815 0.452 -0.614 1.116 sum -3.119 9.846 26.701 28.629 Atomic orbital electron populations 1.22500 0.98597 1.00860 1.00475 1.19519 0.91010 0.94117 0.87645 0.93584 1.21176 1.42684 0.93838 0.96423 0.95935 1.25994 0.94338 1.04321 0.94598 1.70077 1.48608 1.38145 1.02754 0.85712 0.80124 0.79094 0.77728 1.19280 1.21403 1.15930 1.60400 1.59235 1.09085 1.02715 1.21961 1.01884 0.96314 0.89301 1.20912 0.76946 0.87216 0.84865 1.90675 1.50922 1.18193 1.85305 1.45978 1.67439 1.14491 1.08568 1.20954 0.95550 0.94631 0.84996 1.21861 0.96688 0.98033 0.99970 1.21531 0.97401 0.96612 0.99105 1.21128 0.95586 0.96056 0.97894 1.21818 0.98609 0.98648 1.01316 1.21613 0.95350 0.97440 1.00674 1.21785 0.98282 0.96960 0.98638 0.93378 0.92287 0.94027 0.92599 0.84791 0.87650 0.90465 0.75114 0.92264 0.94407 0.90071 0.91992 0.92526 0.90686 0.92814 0.92796 0.91896 0.90161 0.91777 0.89303 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.53 9.16 71.98 0.66 -5.87 16 2 C 0.19 8.56 2.23 44.17 0.10 8.66 16 3 H 0.05 2.03 4.95 -2.38 -0.01 2.02 16 4 C -0.50 -29.67 9.19 25.60 0.24 -29.44 16 5 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 6 C 0.00 0.22 5.47 84.65 0.46 0.68 16 7 N -0.96 -61.32 13.96 21.45 0.30 -61.02 16 8 Si 0.95 43.58 26.99 68.60 1.85 45.43 16 9 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 10 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 11 H -0.24 -9.53 6.82 99.48 0.68 -8.85 16 12 N -0.68 -29.31 5.86 -499.45 -2.92 -32.24 16 13 C 0.04 1.18 5.97 85.56 0.51 1.69 16 14 C 0.51 16.09 7.83 87.66 0.69 16.78 16 15 O -0.57 -23.66 15.86 -3.03 -0.05 -23.71 16 16 N -0.71 -15.22 4.23 -442.53 -1.87 -17.09 16 17 C 0.14 2.84 2.78 44.99 0.13 2.97 16 18 C -0.13 -2.41 5.60 30.59 0.17 -2.24 16 19 C -0.11 -1.62 5.05 30.59 0.15 -1.47 16 20 C -0.09 -0.96 2.72 -10.79 -0.03 -0.98 16 21 C -0.15 -1.41 9.19 71.98 0.66 -0.75 16 22 C -0.11 -1.13 5.03 30.60 0.15 -0.98 16 23 C -0.12 -1.51 5.61 30.59 0.17 -1.34 16 24 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.06 1.87 7.35 -2.39 -0.02 1.85 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.33 14.60 8.18 -89.69 -0.73 13.87 16 29 H 0.11 3.04 8.06 -2.39 -0.02 3.02 16 30 H 0.08 1.96 7.36 -2.39 -0.02 1.94 16 31 H 0.41 6.31 6.87 -92.71 -0.64 5.67 16 32 H 0.06 1.53 7.58 -2.39 -0.02 1.51 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.06 0.92 7.60 -2.38 -0.02 0.90 16 37 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 41 H 0.08 0.62 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.62 6.50 -2.39 -0.02 0.61 16 43 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -74.90 342.30 0.94 -73.95 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: -0.42 Total: 26.96 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.06 Total: -12.29 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -4.50 Total: -110.35 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.05 Total: -23.71 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 1.85 Total: 45.43 kcal Total: -74.90 0.94 -73.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863683.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.218 kcal (2) G-P(sol) polarization free energy of solvation -74.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds