Wall clock time and date at job start Mon Mar 30 2020 01:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00353 * 2 1 4 4 H 1.48501 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47045 * 300.00021 * 3 2 1 6 6 H 1.48503 * 109.47069 * 59.99672 * 3 2 1 7 7 C 1.37881 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00347 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99665 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46868 * 180.02562 * 9 7 2 11 11 C 1.46952 * 111.00073 * 170.00508 * 10 9 7 12 12 C 1.53046 * 109.36862 * 183.18866 * 11 10 9 13 13 N 1.46963 * 109.36048 * 301.59662 * 12 11 10 14 14 C 1.46898 * 111.00120 * 183.19176 * 13 12 11 15 15 C 1.52994 * 109.47533 * 169.99931 * 14 13 12 16 16 C 1.52999 * 109.47358 * 179.97438 * 15 14 13 17 17 O 1.42894 * 112.90964 * 311.24789 * 16 15 14 18 18 C 1.53786 * 113.61361 * 179.97438 * 16 15 14 19 19 C 1.53781 * 87.17350 * 220.06273 * 18 16 15 20 20 C 1.53782 * 87.08260 * 25.39213 * 19 18 16 21 21 C 1.46951 * 110.88370 * 59.31699 * 13 12 11 22 22 C 1.46958 * 110.99732 * 293.79801 * 10 9 7 23 23 H 0.97008 * 120.00051 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46920 * 59.99978 * 9 7 2 25 25 H 1.08997 * 109.47270 * 300.00224 * 9 7 2 26 26 H 1.08997 * 109.49441 * 63.21452 * 11 10 9 27 27 H 1.09005 * 109.48576 * 303.15045 * 11 10 9 28 28 H 1.08998 * 109.49450 * 181.62769 * 12 11 10 29 29 H 1.09004 * 109.49374 * 61.55681 * 12 11 10 30 30 H 1.09001 * 109.47535 * 49.99214 * 14 13 12 31 31 H 1.09004 * 109.46805 * 289.99697 * 14 13 12 32 32 H 1.09001 * 109.47296 * 59.99137 * 15 14 13 33 33 H 1.09004 * 109.46884 * 299.99717 * 15 14 13 34 34 H 0.96703 * 113.99734 * 48.75350 * 17 16 15 35 35 H 1.09002 * 113.61357 * 105.47190 * 18 16 15 36 36 H 1.09002 * 113.61608 * 334.65352 * 18 16 15 37 37 H 1.09001 * 113.61695 * 139.93969 * 19 18 16 38 38 H 1.08996 * 113.61580 * 270.76247 * 19 18 16 39 39 H 1.08997 * 113.61668 * 89.11298 * 20 19 18 40 40 H 1.08998 * 113.61674 * 219.93807 * 20 19 18 41 41 H 1.09004 * 109.48624 * 60.64936 * 21 13 12 42 42 H 1.09005 * 109.49090 * 180.71429 * 21 13 12 43 43 H 1.09002 * 109.49267 * 296.77972 * 22 10 9 44 44 H 1.09005 * 109.48887 * 56.84838 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5205 -4.8939 0.2399 12 6 2.5558 -6.0187 0.3129 13 7 3.3199 -6.0597 -0.9418 14 6 4.2743 -7.1764 -0.9407 15 6 4.8684 -7.3410 -2.3410 16 6 5.8630 -8.5036 -2.3396 17 8 6.7968 -8.4356 -1.2602 18 6 6.5193 -8.7544 -3.7076 19 6 6.3722 -10.2574 -3.4175 20 6 5.1998 -9.8844 -2.4948 21 6 4.0048 -4.7816 -1.1801 22 6 2.9694 -3.6568 -1.2530 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6238 -2.5567 0.8902 26 1 0.8255 -5.0917 -0.5761 27 1 0.9722 -4.8429 1.1806 28 1 2.0478 -6.9716 0.4607 29 1 3.2344 -5.8350 1.1459 30 1 3.7601 -8.0937 -0.6540 31 1 5.0737 -6.9703 -0.2289 32 1 5.3826 -6.4237 -2.6277 33 1 4.0690 -7.5471 -3.0528 34 1 6.3896 -8.2783 -0.3973 35 1 7.5552 -8.4197 -3.7627 36 1 5.9183 -8.4114 -4.5498 37 1 6.0742 -10.8429 -4.2872 38 1 7.2248 -10.6859 -2.8907 39 1 4.2369 -9.8500 -3.0045 40 1 5.1696 -10.4629 -1.5715 41 1 4.6998 -4.5838 -0.3640 42 1 4.5531 -4.8327 -2.1208 43 1 2.2909 -3.8406 -2.0860 44 1 3.4775 -2.7038 -1.4007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603017819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:04 Heat of formation + Delta-G solvation = -22.276195 kcal Electronic energy + Delta-G solvation = -21026.788306 eV Core-core repulsion = 17979.525842 eV Total energy + Delta-G solvation = -3047.262464 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.06908 -38.62494 -35.39283 -34.78509 -32.63780 -31.01974 -30.32694 -27.75773 -26.06587 -25.40495 -23.67948 -23.20028 -21.57534 -20.96694 -19.87499 -19.19451 -17.01320 -16.31141 -16.01411 -15.27430 -15.23033 -15.04207 -14.44182 -14.38552 -14.24365 -13.89254 -13.43690 -13.30126 -13.04937 -12.68452 -12.24553 -12.01865 -11.88410 -11.73327 -11.34055 -11.30989 -11.13332 -11.02867 -10.85692 -10.71500 -10.63185 -10.44307 -10.30741 -10.15970 -9.79010 -9.69005 -9.16151 -8.44278 -8.15710 -7.22568 -6.02753 -4.04100 3.30809 3.38193 3.43033 3.81092 3.95392 4.28117 4.42502 4.44082 4.58912 4.74187 4.92906 4.97572 5.11456 5.25147 5.33019 5.39677 5.42926 5.45128 5.50486 5.56560 5.64557 5.68008 5.77193 5.80160 5.84923 5.92694 5.98377 6.04707 6.09695 6.13753 6.22514 6.43246 6.59815 6.69190 7.18043 7.22650 7.35270 7.38053 7.42213 7.80508 8.09336 8.21212 8.55580 9.03825 9.60228 11.08206 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037097 B = 0.003376 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.587302 B = 8292.192171 C = 8686.085277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.054 3.946 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.061 3.939 13 N -0.537 5.537 14 C 0.053 3.947 15 C -0.133 4.133 16 C 0.109 3.891 17 O -0.545 6.545 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.165 4.165 21 C 0.056 3.944 22 C 0.067 3.933 23 H 0.261 0.739 24 H -0.009 1.009 25 H 0.029 0.971 26 H 0.030 0.970 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.038 0.962 30 H 0.071 0.929 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.378 0.622 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.028 0.972 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.775 -18.944 -4.712 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.147 4.147 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.067 4.067 13 N -0.262 5.262 14 C -0.075 4.075 15 C -0.171 4.171 16 C 0.067 3.933 17 O -0.352 6.352 18 C -0.165 4.165 19 C -0.174 4.174 20 C -0.203 4.203 21 C -0.072 4.072 22 C -0.061 4.061 23 H 0.070 0.930 24 H 0.009 0.991 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.089 0.911 31 H 0.049 0.951 32 H 0.091 0.909 33 H 0.101 0.899 34 H 0.227 0.773 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.035 -18.913 -5.179 22.028 hybrid contribution -0.125 1.058 0.502 1.178 sum 9.910 -17.855 -4.677 20.949 Atomic orbital electron populations 1.69969 1.06072 1.26653 1.51129 1.24995 0.94863 0.99331 0.95472 0.86451 0.80078 0.83447 0.77505 1.19661 1.21099 1.21023 1.21196 0.93483 0.89953 1.49883 0.91879 1.19706 0.90055 0.87324 0.96099 1.62284 1.28099 1.02750 1.33289 1.22058 0.94747 0.90013 1.00456 1.22158 0.96104 0.98532 0.89900 1.62169 1.25635 1.03386 1.35056 1.22036 0.94276 0.94983 0.96253 1.22132 0.98315 0.98559 0.98127 1.22252 0.89291 0.93292 0.88431 1.86457 1.35660 1.94970 1.18139 1.23027 1.01873 0.96408 0.95203 1.22748 0.98806 0.96251 0.99558 1.23658 0.98472 0.97515 1.00607 1.22300 0.96132 0.88606 1.00180 1.21989 0.95434 0.97435 0.91265 0.92983 0.99070 0.95247 0.95163 0.91033 0.91284 0.94349 0.91056 0.95108 0.90887 0.89897 0.77329 0.90743 0.88825 0.91512 0.90032 0.89299 0.91205 0.94383 0.91032 0.95364 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.51 -14.30 8.47 -34.44 -0.29 -14.59 16 8 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 9 C 0.19 5.10 4.72 -4.97 -0.02 5.07 16 10 N -0.54 -11.82 4.70 -235.91 -1.11 -12.93 16 11 C 0.06 1.04 5.61 -3.77 -0.02 1.02 16 12 C 0.06 0.91 5.61 -3.77 -0.02 0.89 16 13 N -0.54 -7.76 4.71 -234.46 -1.10 -8.86 16 14 C 0.05 0.58 4.44 -3.83 -0.02 0.57 16 15 C -0.13 -1.36 4.84 -26.73 -0.13 -1.49 16 16 C 0.11 1.02 1.43 -89.71 -0.13 0.90 16 17 O -0.55 -5.70 13.37 -35.23 -0.47 -6.17 16 18 C -0.13 -1.12 7.47 -25.92 -0.19 -1.31 16 19 C -0.14 -1.10 8.02 -25.92 -0.21 -1.31 16 20 C -0.16 -1.36 7.47 -25.82 -0.19 -1.55 16 21 C 0.06 0.89 5.41 -3.77 -0.02 0.87 16 22 C 0.07 1.34 5.43 -3.77 -0.02 1.32 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 25 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.28 8.07 -51.93 -0.42 0.87 16 28 H 0.07 0.88 8.07 -51.93 -0.42 0.46 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.72 8.03 -51.93 -0.42 0.30 16 31 H 0.03 0.33 6.69 -51.93 -0.35 -0.02 16 32 H 0.07 0.82 6.49 -51.93 -0.34 0.48 16 33 H 0.08 0.86 7.95 -51.93 -0.41 0.44 16 34 H 0.38 3.02 6.99 45.56 0.32 3.34 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.69 7.96 -51.93 -0.41 0.28 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.09 1.82 6.79 -51.93 -0.35 1.47 16 LS Contribution 339.49 15.07 5.12 5.12 Total: -1.00 -30.68 339.49 -10.50 -41.17 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -7.28 Total: -0.71 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -1.36 Total: -8.17 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: -1.48 Total: -47.91 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.47 Total: -6.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.68 -10.50 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603017819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.896 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds