Wall clock time and date at job start Mon Mar 30 2020 01:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 120.00353 * 2 1 4 4 H 1.48501 * 109.47146 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47045 * 300.00021 * 3 2 1 6 6 H 1.48503 * 109.47069 * 59.99672 * 3 2 1 7 7 C 1.37881 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00347 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99665 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.46868 * 180.02562 * 9 7 2 11 11 C 1.46952 * 111.00073 * 170.00508 * 10 9 7 12 12 C 1.53046 * 109.36862 * 183.18866 * 11 10 9 13 13 N 1.46963 * 109.36048 * 301.59662 * 12 11 10 14 14 C 1.46898 * 111.00120 * 183.19176 * 13 12 11 15 15 C 1.52994 * 109.47533 * 169.99931 * 14 13 12 16 16 C 1.52999 * 109.47358 * 179.97438 * 15 14 13 17 17 O 1.42894 * 112.90964 * 311.24789 * 16 15 14 18 18 C 1.53786 * 113.61361 * 179.97438 * 16 15 14 19 19 C 1.53781 * 87.17350 * 220.06273 * 18 16 15 20 20 C 1.53782 * 87.08260 * 25.39213 * 19 18 16 21 21 C 1.46951 * 110.88370 * 59.31699 * 13 12 11 22 22 C 1.46958 * 110.99732 * 293.79801 * 10 9 7 23 23 H 0.97008 * 120.00051 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.46920 * 59.99978 * 9 7 2 25 25 H 1.08997 * 109.47270 * 300.00224 * 9 7 2 26 26 H 1.08997 * 109.49441 * 63.21452 * 11 10 9 27 27 H 1.09005 * 109.48576 * 303.15045 * 11 10 9 28 28 H 1.08998 * 109.49450 * 181.62769 * 12 11 10 29 29 H 1.09004 * 109.49374 * 61.55681 * 12 11 10 30 30 H 1.09001 * 109.47535 * 49.99214 * 14 13 12 31 31 H 1.09004 * 109.46805 * 289.99697 * 14 13 12 32 32 H 1.09001 * 109.47296 * 59.99137 * 15 14 13 33 33 H 1.09004 * 109.46884 * 299.99717 * 15 14 13 34 34 H 0.96703 * 113.99734 * 48.75350 * 17 16 15 35 35 H 1.09002 * 113.61357 * 105.47190 * 18 16 15 36 36 H 1.09002 * 113.61608 * 334.65352 * 18 16 15 37 37 H 1.09001 * 113.61695 * 139.93969 * 19 18 16 38 38 H 1.08996 * 113.61580 * 270.76247 * 19 18 16 39 39 H 1.08997 * 113.61668 * 89.11298 * 20 19 18 40 40 H 1.08998 * 113.61674 * 219.93807 * 20 19 18 41 41 H 1.09004 * 109.48624 * 60.64936 * 21 13 12 42 42 H 1.09005 * 109.49090 * 180.71429 * 21 13 12 43 43 H 1.09002 * 109.49267 * 296.77972 * 22 10 9 44 44 H 1.09005 * 109.48887 * 56.84838 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7091 1.3462 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 7 2.2054 -3.6158 0.0018 11 6 1.5205 -4.8939 0.2399 12 6 2.5558 -6.0187 0.3129 13 7 3.3199 -6.0597 -0.9418 14 6 4.2743 -7.1764 -0.9407 15 6 4.8684 -7.3410 -2.3410 16 6 5.8630 -8.5036 -2.3396 17 8 6.7968 -8.4356 -1.2602 18 6 6.5193 -8.7544 -3.7076 19 6 6.3722 -10.2574 -3.4175 20 6 5.1998 -9.8844 -2.4948 21 6 4.0048 -4.7816 -1.1801 22 6 2.9694 -3.6568 -1.2530 23 1 -0.4850 0.8401 -0.0004 24 1 0.6245 -2.5571 -0.8897 25 1 0.6238 -2.5567 0.8902 26 1 0.8255 -5.0917 -0.5761 27 1 0.9722 -4.8429 1.1806 28 1 2.0478 -6.9716 0.4607 29 1 3.2344 -5.8350 1.1459 30 1 3.7601 -8.0937 -0.6540 31 1 5.0737 -6.9703 -0.2289 32 1 5.3826 -6.4237 -2.6277 33 1 4.0690 -7.5471 -3.0528 34 1 6.3896 -8.2783 -0.3973 35 1 7.5552 -8.4197 -3.7627 36 1 5.9183 -8.4114 -4.5498 37 1 6.0742 -10.8429 -4.2872 38 1 7.2248 -10.6859 -2.8907 39 1 4.2369 -9.8500 -3.0045 40 1 5.1696 -10.4629 -1.5715 41 1 4.6998 -4.5838 -0.3640 42 1 4.5531 -4.8327 -2.1208 43 1 2.2909 -3.8406 -2.0860 44 1 3.4775 -2.7038 -1.4007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603017819.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:03 Heat of formation + Delta-G solvation = -45.096209 kcal Electronic energy + Delta-G solvation = -21027.777856 eV Core-core repulsion = 17979.525842 eV Total energy + Delta-G solvation = -3048.252014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86349 -39.93382 -36.84620 -35.57366 -34.65192 -32.26251 -31.68956 -29.46301 -27.06969 -26.58256 -24.87866 -24.57733 -23.29416 -21.98505 -20.64849 -20.55987 -18.51009 -17.89836 -17.07255 -16.58021 -16.23164 -16.02068 -15.86993 -15.83805 -15.43193 -15.37283 -14.72096 -14.57064 -14.27513 -13.98794 -13.46398 -13.34251 -13.05166 -12.89210 -12.84459 -12.68197 -12.47520 -12.28072 -12.14282 -12.04873 -12.01166 -11.78631 -11.68464 -11.46248 -11.19618 -10.91620 -10.64037 -10.50360 -9.32807 -9.04270 -8.22353 -6.32850 1.40141 1.40661 1.54501 2.39114 2.86463 3.09879 3.15905 3.28909 3.58033 3.73838 3.91090 3.94014 4.06104 4.12168 4.18788 4.25849 4.37421 4.45977 4.51111 4.61037 4.61880 4.71200 4.83162 4.83821 4.87559 4.96306 4.98114 5.01875 5.04150 5.06475 5.12566 5.20619 5.25537 5.27225 5.39366 5.48519 5.62491 5.99542 6.06445 6.11507 6.33813 6.61252 6.78734 6.83303 7.37114 8.89209 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037097 B = 0.003376 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.587302 B = 8292.192171 C = 8686.085277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.062 0.938 9 C 0.209 3.791 10 N -0.546 5.546 11 C 0.053 3.947 12 C 0.071 3.929 13 N -0.545 5.545 14 C 0.056 3.944 15 C -0.126 4.126 16 C 0.106 3.894 17 O -0.560 6.560 18 C -0.133 4.133 19 C -0.134 4.134 20 C -0.159 4.159 21 C 0.069 3.931 22 C 0.069 3.931 23 H 0.265 0.735 24 H -0.041 1.041 25 H 0.004 0.996 26 H 0.021 0.979 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.387 0.613 35 H 0.064 0.936 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.091 0.909 43 H 0.015 0.985 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.141 -20.090 -4.863 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.795 3.205 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.082 3.918 10 N -0.271 5.271 11 C -0.076 4.076 12 C -0.057 4.057 13 N -0.270 5.270 14 C -0.071 4.071 15 C -0.164 4.164 16 C 0.065 3.935 17 O -0.369 6.369 18 C -0.170 4.170 19 C -0.172 4.172 20 C -0.197 4.197 21 C -0.059 4.059 22 C -0.060 4.060 23 H 0.074 0.926 24 H -0.023 1.023 25 H 0.022 0.978 26 H 0.039 0.961 27 H 0.089 0.911 28 H 0.119 0.881 29 H 0.057 0.943 30 H 0.108 0.892 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.237 0.763 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.115 0.885 40 H 0.091 0.909 41 H 0.052 0.948 42 H 0.109 0.891 43 H 0.033 0.967 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.415 -20.091 -5.326 23.713 hybrid contribution -0.579 1.359 0.541 1.573 sum 10.836 -18.732 -4.786 22.163 Atomic orbital electron populations 1.70095 1.07783 1.27903 1.51771 1.25941 0.95768 1.03293 0.94733 0.85308 0.78949 0.78421 0.77782 1.18684 1.20319 1.20319 1.21475 0.93565 0.91038 1.50067 0.91949 1.19352 0.90090 0.89051 0.93281 1.62223 1.27260 1.03148 1.34449 1.22178 0.95820 0.89592 0.99987 1.22085 0.95318 0.98172 0.90164 1.62147 1.26602 1.03473 1.34794 1.22099 0.93931 0.94091 0.97025 1.22061 0.98330 0.98452 0.97567 1.22303 0.89174 0.93541 0.88481 1.86443 1.36491 1.95050 1.18924 1.23111 1.01489 0.97052 0.95351 1.22733 0.98596 0.95867 0.99983 1.23641 0.98732 0.96486 1.00846 1.22110 0.94569 0.88058 1.01140 1.21970 0.95710 0.98446 0.89828 0.92629 1.02317 0.97801 0.96109 0.91072 0.88146 0.94343 0.89233 0.94340 0.92030 0.89796 0.76277 0.91694 0.87823 0.90255 0.90652 0.88506 0.90887 0.94774 0.89060 0.96671 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.07 13.29 21.45 0.28 -56.79 16 2 C 0.00 0.03 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.52 -30.25 8.47 25.60 0.22 -30.03 16 8 H 0.06 3.54 7.13 -2.91 -0.02 3.52 16 9 C 0.21 11.49 4.72 85.56 0.40 11.90 16 10 N -0.55 -24.48 4.70 -900.28 -4.23 -28.71 16 11 C 0.05 1.95 5.61 86.31 0.48 2.43 16 12 C 0.07 1.96 5.61 86.31 0.48 2.45 16 13 N -0.55 -14.55 4.71 -895.71 -4.22 -18.77 16 14 C 0.06 1.07 4.44 86.30 0.38 1.45 16 15 C -0.13 -2.27 4.84 30.59 0.15 -2.12 16 16 C 0.11 1.76 1.43 -10.20 -0.01 1.74 16 17 O -0.56 -10.56 13.37 -148.98 -1.99 -12.55 16 18 C -0.13 -2.08 7.47 31.12 0.23 -1.85 16 19 C -0.13 -1.88 8.02 31.12 0.25 -1.63 16 20 C -0.16 -2.20 7.47 31.18 0.23 -1.97 16 21 C 0.07 2.12 5.41 86.31 0.47 2.59 16 22 C 0.07 2.78 5.43 86.31 0.47 3.25 16 23 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 24 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 25 H 0.00 0.23 8.03 -2.39 -0.02 0.21 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 2.58 8.07 -2.38 -0.02 2.56 16 28 H 0.10 2.21 8.07 -2.39 -0.02 2.19 16 29 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.09 1.44 8.03 -2.39 -0.02 1.42 16 31 H 0.04 0.71 6.69 -2.39 -0.02 0.69 16 32 H 0.06 1.25 6.49 -2.39 -0.02 1.24 16 33 H 0.08 1.51 7.95 -2.39 -0.02 1.49 16 34 H 0.39 5.27 6.99 -74.06 -0.52 4.76 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 36 H 0.10 1.39 8.10 -2.39 -0.02 1.37 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 1.20 7.96 -2.39 -0.02 1.18 16 40 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.09 2.45 6.34 -2.38 -0.02 2.43 16 43 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 2.89 6.79 -2.38 -0.02 2.87 16 Total: -1.00 -66.82 339.49 -3.47 -70.30 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.44 Total: 11.08 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 4.22 Total: -11.30 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -8.17 Total: -104.26 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -1.99 Total: -12.55 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -66.82 -3.47 -70.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603017819.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.199 kcal (2) G-P(sol) polarization free energy of solvation -66.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds