Wall clock time and date at job start Mon Mar 30 2020 00:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47348 * 2 1 4 4 C 1.52993 * 109.47473 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.47210 * 180.02562 * 4 3 2 6 6 C 1.42901 * 113.99741 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.46882 * 179.97438 * 6 5 4 8 8 N 1.46494 * 109.47251 * 180.02562 * 7 6 5 9 9 C 1.35317 * 125.87155 * 125.32590 * 8 7 6 10 10 C 1.35352 * 106.17693 * 180.11507 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31611 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47483 * 90.00178 * 17 15 13 19 19 H 1.48498 * 109.47011 * 210.00042 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99664 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 10 9 23 23 H 1.08997 * 109.47383 * 299.99999 * 1 2 3 24 24 H 1.08998 * 109.47035 * 60.00517 * 1 2 3 25 25 H 1.09009 * 109.46916 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47383 * 240.00001 * 2 1 3 27 27 H 1.09000 * 109.46682 * 119.99890 * 2 1 3 28 28 H 1.09007 * 109.46772 * 59.99605 * 3 2 1 29 29 H 1.09006 * 109.47242 * 300.00299 * 3 2 1 30 30 H 1.08997 * 109.47071 * 60.00115 * 4 3 2 31 31 H 1.08996 * 109.47580 * 300.00049 * 4 3 2 32 32 H 1.09006 * 109.47367 * 60.00305 * 6 5 4 33 33 H 1.08997 * 109.47462 * 300.00291 * 6 5 4 34 34 H 1.08998 * 109.47402 * 60.00298 * 7 6 5 35 35 H 1.09000 * 109.47186 * 299.99892 * 7 6 5 36 36 H 1.08002 * 126.91295 * 359.96910 * 9 8 7 37 37 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 38 38 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 39 39 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 40 40 H 0.97008 * 120.00329 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.4709 2.9026 0.0025 7 6 5.8654 4.3808 0.0024 8 7 7.3257 4.4965 0.0030 9 6 8.0665 5.1910 -0.8914 10 6 9.3577 5.0267 -0.5202 11 6 10.5722 5.6024 -1.2017 12 7 10.9468 6.8604 -0.5511 13 6 12.0318 7.5660 -0.9985 14 1 12.6086 7.1973 -1.8339 15 6 12.3903 8.7550 -0.3784 16 7 13.4328 9.4335 -0.8087 17 14 11.3930 9.3922 1.0669 18 1 11.9538 8.8526 2.3317 19 1 11.4515 10.8758 1.0929 20 1 9.9809 8.9550 0.9252 21 7 9.3433 4.2573 0.5741 22 7 8.1244 3.9601 0.8581 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8891 31 1 3.9330 0.9288 0.8908 32 1 5.8744 2.4192 -0.8873 33 1 5.8729 2.4189 0.8926 34 1 5.4619 4.8646 0.8919 35 1 5.4634 4.8641 -0.8881 36 1 7.7011 5.7599 -1.7336 37 1 10.3453 5.7898 -2.2513 38 1 11.3987 4.8956 -1.1293 39 1 10.4290 7.1913 0.1994 40 1 13.6831 10.2646 -0.3756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603201166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:50 Heat of formation + Delta-G solvation = 54.717126 kcal Electronic energy + Delta-G solvation = -19292.378917 eV Core-core repulsion = 16144.914790 eV Total energy + Delta-G solvation = -3147.464127 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.11002 -38.76135 -35.91289 -35.25246 -34.35923 -31.90994 -30.68434 -30.24153 -28.87967 -26.12920 -24.47796 -23.69532 -22.41887 -21.77008 -21.46606 -20.51689 -17.94375 -17.48452 -17.06001 -16.48142 -16.16007 -15.53999 -15.11534 -14.67017 -14.48816 -14.19867 -13.99594 -13.77911 -13.10512 -13.01334 -12.69880 -12.67975 -12.15179 -12.08555 -11.80218 -11.62216 -11.50315 -11.44732 -11.15685 -11.08345 -10.86093 -10.56666 -10.15585 -10.13430 -9.96271 -9.57495 -9.02226 -8.88194 -7.21768 -5.74225 -3.09880 1.66741 2.10381 2.75281 3.26952 3.41599 3.46693 3.49427 4.15413 4.32296 4.38973 4.52561 4.57780 4.63173 4.68012 4.74928 4.77635 4.90599 5.02259 5.06302 5.17974 5.20852 5.29446 5.30584 5.35910 5.40162 5.57473 5.60406 5.71610 5.73637 5.74652 5.79174 6.26410 6.54053 6.56874 6.66923 6.69686 8.00292 8.44424 8.68610 9.22572 9.95213 10.15262 11.43842 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.052938 B = 0.002541 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.795583 B =11014.931237 C =11221.218725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.119 4.119 4 C 0.063 3.937 5 O -0.387 6.387 6 C 0.054 3.946 7 C 0.122 3.878 8 N -0.299 5.299 9 C -0.038 4.038 10 C -0.012 4.012 11 C 0.238 3.762 12 N -0.750 5.750 13 C -0.244 4.244 14 H 0.094 0.906 15 C 0.007 3.993 16 N -0.933 5.933 17 Si 0.884 3.116 18 H -0.283 1.283 19 H -0.291 1.291 20 H -0.280 1.280 21 N -0.252 5.252 22 N -0.096 5.096 23 H 0.055 0.945 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.192 0.808 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.363 0.637 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.549 -17.544 -0.556 31.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.157 4.157 4 C -0.013 4.013 5 O -0.305 6.305 6 C -0.024 4.024 7 C 0.000 4.000 8 N -0.094 5.094 9 C -0.189 4.189 10 C -0.150 4.150 11 C 0.109 3.891 12 N -0.396 5.396 13 C -0.373 4.373 14 H 0.111 0.889 15 C -0.189 4.189 16 N -0.581 5.581 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.217 1.217 20 H -0.206 1.206 21 N -0.120 5.120 22 N -0.075 5.075 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.124 0.876 35 H 0.132 0.868 36 H 0.209 0.791 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.195 0.805 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.398 -18.211 0.564 32.075 hybrid contribution -0.728 1.055 0.121 1.288 sum -27.126 -17.156 0.685 32.103 Atomic orbital electron populations 1.21754 0.95259 1.01846 1.02089 1.21448 0.96391 0.95873 1.02355 1.21564 0.93077 0.97478 1.03567 1.22579 0.95243 0.82868 1.00608 1.87765 1.19737 1.27369 1.95646 1.22556 0.82096 0.95346 1.02387 1.21673 0.73851 0.97921 1.06544 1.47110 1.08403 1.34323 1.19594 1.23506 0.91790 1.03711 0.99867 1.22556 0.95721 1.00766 0.95962 1.18920 0.88808 0.87799 0.93560 1.42662 1.34951 1.22962 1.39028 1.19045 1.02982 1.01913 1.13399 0.88867 1.24628 0.97720 0.97484 0.99055 1.69695 1.27685 1.17251 1.43424 0.86551 0.80038 0.78038 0.83906 1.20960 1.21710 1.20596 1.75112 1.10192 1.13426 1.13275 1.78256 0.95366 1.19250 1.14675 0.92544 0.92562 0.92523 0.91765 0.91733 0.90953 0.90983 0.93075 0.92944 0.92350 0.91229 0.87576 0.86828 0.79055 0.93548 0.93417 0.80487 0.93038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.12 -0.58 5.93 -26.73 -0.16 -0.74 16 3 C -0.12 -0.69 5.58 -26.74 -0.15 -0.84 16 4 C 0.06 0.43 5.94 37.15 0.22 0.65 16 5 O -0.39 -3.35 10.34 -35.23 -0.36 -3.71 16 6 C 0.05 0.47 6.06 37.16 0.23 0.69 16 7 C 0.12 1.09 6.82 -4.05 -0.03 1.06 16 8 N -0.30 -4.00 3.44 -61.27 -0.21 -4.21 16 9 C -0.04 -0.54 11.50 -17.04 -0.20 -0.74 16 10 C -0.01 -0.22 6.61 -82.78 -0.55 -0.77 16 11 C 0.24 4.80 6.82 -5.19 -0.04 4.77 16 12 N -0.75 -18.61 5.40 -61.09 -0.33 -18.94 16 13 C -0.24 -7.02 10.47 -15.06 -0.16 -7.17 16 14 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 15 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 16 N -0.93 -29.59 13.97 55.49 0.78 -28.82 16 17 Si 0.88 22.95 27.74 -169.99 -4.71 18.23 16 18 H -0.28 -7.40 7.11 56.52 0.40 -7.00 16 19 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 20 H -0.28 -6.93 6.52 56.52 0.37 -6.56 16 21 N -0.25 -4.93 12.41 33.29 0.41 -4.51 16 22 N -0.10 -1.62 12.92 60.35 0.78 -0.84 16 23 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 24 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 25 H 0.06 0.22 8.14 -51.92 -0.42 -0.21 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.66 8.12 -51.93 -0.42 0.23 16 34 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.11 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.19 2.01 8.06 -52.49 -0.42 1.59 16 37 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.36 9.10 5.52 -40.82 -0.23 8.87 16 40 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 340.09 15.07 5.13 5.13 Total: -1.00 -34.54 340.09 -5.66 -40.20 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.58 Total: 0.73 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -0.55 Total: -3.26 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 1.43 Total: -57.32 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.36 Total: -3.71 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.71 Total: 18.23 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.54 -5.66 -40.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603201166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.914 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds