Wall clock time and date at job start Mon Mar 30 2020 00:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47348 * 2 1 4 4 C 1.52993 * 109.47473 * 179.97438 * 3 2 1 5 5 O 1.42907 * 109.47210 * 180.02562 * 4 3 2 6 6 C 1.42901 * 113.99741 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.46882 * 179.97438 * 6 5 4 8 8 N 1.46494 * 109.47251 * 180.02562 * 7 6 5 9 9 C 1.35317 * 125.87155 * 125.32590 * 8 7 6 10 10 C 1.35352 * 106.17693 * 180.11507 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31611 * 120.00081 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99814 * 0.02562 * 15 13 12 18 18 H 1.48501 * 109.47483 * 90.00178 * 17 15 13 19 19 H 1.48498 * 109.47011 * 210.00042 * 17 15 13 20 20 H 1.48502 * 109.47495 * 329.99664 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 10 9 23 23 H 1.08997 * 109.47383 * 299.99999 * 1 2 3 24 24 H 1.08998 * 109.47035 * 60.00517 * 1 2 3 25 25 H 1.09009 * 109.46916 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47383 * 240.00001 * 2 1 3 27 27 H 1.09000 * 109.46682 * 119.99890 * 2 1 3 28 28 H 1.09007 * 109.46772 * 59.99605 * 3 2 1 29 29 H 1.09006 * 109.47242 * 300.00299 * 3 2 1 30 30 H 1.08997 * 109.47071 * 60.00115 * 4 3 2 31 31 H 1.08996 * 109.47580 * 300.00049 * 4 3 2 32 32 H 1.09006 * 109.47367 * 60.00305 * 6 5 4 33 33 H 1.08997 * 109.47462 * 300.00291 * 6 5 4 34 34 H 1.08998 * 109.47402 * 60.00298 * 7 6 5 35 35 H 1.09000 * 109.47186 * 299.99892 * 7 6 5 36 36 H 1.08002 * 126.91295 * 359.96910 * 9 8 7 37 37 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 38 38 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 39 39 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 40 40 H 0.97008 * 120.00329 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0463 2.7898 0.0012 6 6 5.4709 2.9026 0.0025 7 6 5.8654 4.3808 0.0024 8 7 7.3257 4.4965 0.0030 9 6 8.0665 5.1910 -0.8914 10 6 9.3577 5.0267 -0.5202 11 6 10.5722 5.6024 -1.2017 12 7 10.9468 6.8604 -0.5511 13 6 12.0318 7.5660 -0.9985 14 1 12.6086 7.1973 -1.8339 15 6 12.3903 8.7550 -0.3784 16 7 13.4328 9.4335 -0.8087 17 14 11.3930 9.3922 1.0669 18 1 11.9538 8.8526 2.3317 19 1 11.4515 10.8758 1.0929 20 1 9.9809 8.9550 0.9252 21 7 9.3433 4.2573 0.5741 22 7 8.1244 3.9601 0.8581 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.9337 0.9285 -0.8891 31 1 3.9330 0.9288 0.8908 32 1 5.8744 2.4192 -0.8873 33 1 5.8729 2.4189 0.8926 34 1 5.4619 4.8646 0.8919 35 1 5.4634 4.8641 -0.8881 36 1 7.7011 5.7599 -1.7336 37 1 10.3453 5.7898 -2.2513 38 1 11.3987 4.8956 -1.1293 39 1 10.4290 7.1913 0.1994 40 1 13.6831 10.2646 -0.3756 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603201166.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:50 Heat of formation + Delta-G solvation = 30.358907 kcal Electronic energy + Delta-G solvation = -19293.435169 eV Core-core repulsion = 16144.914790 eV Total energy + Delta-G solvation = -3148.520379 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.30689 -39.38077 -37.15882 -36.27666 -35.44781 -33.81584 -31.99818 -31.32101 -29.51527 -27.83363 -25.30365 -24.37114 -24.15972 -22.83888 -22.12930 -21.68241 -19.86359 -18.50982 -17.79700 -17.34097 -17.06305 -16.56593 -16.13927 -15.96250 -15.71001 -15.63811 -14.99896 -14.62818 -14.38928 -14.30015 -13.91056 -13.57711 -13.36599 -13.21943 -12.91517 -12.70212 -12.56531 -12.30577 -12.12570 -11.98115 -11.92499 -11.83564 -11.80829 -11.53978 -11.12129 -11.01752 -10.73260 -10.28272 -9.31829 -8.02354 -5.35714 0.54722 1.19841 1.34666 1.40098 1.40723 1.46842 2.47600 2.61156 3.27195 3.30591 3.58543 3.70346 3.82571 3.95341 3.97235 4.07604 4.12026 4.19286 4.24117 4.28035 4.37327 4.41926 4.53641 4.64361 4.67440 4.86175 4.89832 4.92318 5.01595 5.10405 5.14648 5.23381 5.32917 5.42770 5.58715 5.75711 6.02116 6.21131 7.05756 7.44795 7.80785 8.00360 9.18691 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.052938 B = 0.002541 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.795583 B =11014.931237 C =11221.218725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.115 4.115 4 C 0.058 3.942 5 O -0.395 6.395 6 C 0.060 3.940 7 C 0.115 3.885 8 N -0.285 5.285 9 C -0.010 4.010 10 C -0.044 4.044 11 C 0.239 3.761 12 N -0.753 5.753 13 C -0.231 4.231 14 H 0.068 0.932 15 C -0.058 4.058 16 N -0.979 5.979 17 Si 0.950 3.050 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.258 1.258 21 N -0.295 5.295 22 N -0.112 5.112 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.115 0.885 35 H 0.148 0.852 36 H 0.235 0.765 37 H 0.070 0.930 38 H 0.034 0.966 39 H 0.362 0.638 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.485 -17.886 -0.683 34.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.018 4.018 5 O -0.313 6.313 6 C -0.018 4.018 7 C -0.005 4.005 8 N -0.080 5.080 9 C -0.162 4.162 10 C -0.182 4.182 11 C 0.112 3.888 12 N -0.399 5.399 13 C -0.362 4.362 14 H 0.086 0.914 15 C -0.250 4.250 16 N -0.630 5.630 17 Si 0.778 3.222 18 H -0.214 1.214 19 H -0.216 1.216 20 H -0.183 1.183 21 N -0.162 5.162 22 N -0.091 5.091 23 H 0.074 0.926 24 H 0.075 0.925 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.133 0.867 35 H 0.166 0.834 36 H 0.251 0.749 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.195 0.805 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -29.392 -18.611 0.443 34.792 hybrid contribution 0.105 1.036 0.085 1.045 sum -29.287 -17.575 0.529 34.160 Atomic orbital electron populations 1.21762 0.94976 1.02198 1.02087 1.21443 0.96621 0.95204 1.02644 1.21543 0.92369 0.98103 1.03264 1.22734 0.95831 0.82191 1.01068 1.87748 1.19469 1.28443 1.95687 1.22433 0.82275 0.95138 1.01979 1.22081 0.71130 0.98519 1.08734 1.47418 1.09758 1.32609 1.18202 1.23986 0.90341 1.02001 0.99835 1.22286 0.96472 1.02588 0.96862 1.18931 0.89708 0.85613 0.94588 1.42694 1.33838 1.24177 1.39202 1.19066 1.03319 1.01772 1.12047 0.91379 1.25381 0.99168 0.98178 1.02240 1.69854 1.29825 1.17945 1.45332 0.85482 0.79524 0.77213 0.79946 1.21392 1.21588 1.18334 1.75053 1.11812 1.14811 1.14530 1.78176 0.95056 1.20102 1.15732 0.92639 0.92496 0.92020 0.91365 0.91574 0.91415 0.91092 0.92347 0.92781 0.92047 0.92479 0.86650 0.83432 0.74887 0.91204 0.94751 0.80528 0.93257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.39 16 2 C -0.12 -0.95 5.93 30.59 0.18 -0.77 16 3 C -0.12 -1.14 5.58 30.59 0.17 -0.97 16 4 C 0.06 0.68 5.94 71.98 0.43 1.11 16 5 O -0.39 -5.91 10.34 -148.98 -1.54 -7.45 16 6 C 0.06 0.88 6.06 71.98 0.44 1.32 16 7 C 0.12 1.64 6.82 86.38 0.59 2.23 16 8 N -0.29 -6.73 3.44 -347.75 -1.20 -7.93 16 9 C -0.01 -0.25 11.50 83.49 0.96 0.71 16 10 C -0.04 -1.50 6.61 41.60 0.28 -1.22 16 11 C 0.24 9.39 6.82 85.63 0.58 9.98 16 12 N -0.75 -36.61 5.40 -347.18 -1.87 -38.49 16 13 C -0.23 -13.36 10.47 84.03 0.88 -12.48 16 14 H 0.07 4.20 8.06 -2.91 -0.02 4.18 16 15 C -0.06 -3.46 5.50 84.86 0.47 -3.00 16 16 N -0.98 -63.13 13.97 21.65 0.30 -62.83 16 17 Si 0.95 47.22 27.74 68.60 1.90 49.12 16 18 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 19 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 20 H -0.26 -11.79 6.52 99.48 0.65 -11.14 16 21 N -0.29 -11.25 12.41 -48.60 -0.60 -11.85 16 22 N -0.11 -3.58 12.92 37.02 0.48 -3.10 16 23 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 24 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 25 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 34 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.15 1.16 8.07 -2.39 -0.02 1.14 16 36 H 0.23 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.36 17.52 5.52 -92.71 -0.51 17.00 16 40 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 Total: -1.00 -75.09 340.09 3.60 -71.49 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: 0.44 Total: 14.52 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.69 Total: -3.48 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -2.89 Total: -124.20 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -1.54 Total: -7.45 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.90 Total: 49.12 kcal Total: -75.09 3.60 -71.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603201166.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.850 kcal (2) G-P(sol) polarization free energy of solvation -75.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds