Wall clock time and date at job start Mon Mar 30 2020 00:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47487 * 2 1 4 4 C 1.53003 * 109.47154 * 239.99844 * 2 1 3 5 5 O 1.42907 * 109.46896 * 120.00193 * 2 1 3 6 6 C 1.42901 * 113.99741 * 59.99575 * 5 2 1 7 7 C 1.52996 * 109.46882 * 179.97438 * 6 5 2 8 8 N 1.46494 * 109.47251 * 180.02562 * 7 6 5 9 9 C 1.35317 * 125.87155 * 125.32590 * 8 7 6 10 10 C 1.35352 * 106.17693 * 180.11507 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 10 9 23 23 H 1.08997 * 109.47039 * 300.00110 * 1 2 3 24 24 H 1.09005 * 109.46476 * 59.99403 * 1 2 3 25 25 H 1.08994 * 109.47446 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47381 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47596 * 299.99858 * 3 2 1 28 28 H 1.09007 * 109.47195 * 59.99856 * 3 2 1 29 29 H 1.09000 * 109.47014 * 300.00864 * 4 2 1 30 30 H 1.08998 * 109.46759 * 60.00272 * 4 2 1 31 31 H 1.08997 * 109.46931 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.47367 * 60.00305 * 6 5 2 33 33 H 1.08997 * 109.47462 * 300.00291 * 6 5 2 34 34 H 1.08998 * 109.47402 * 60.00298 * 7 6 5 35 35 H 1.09000 * 109.47186 * 299.99892 * 7 6 5 36 36 H 1.08002 * 126.91295 * 359.96910 * 9 8 7 37 37 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 38 38 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 39 39 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 40 40 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5845 -2.0356 1.2645 7 6 2.1503 -2.6541 2.5443 8 7 1.7185 -4.0504 2.6442 9 6 2.5299 -5.1223 2.7980 10 6 1.7197 -6.2056 2.8408 11 6 2.1436 -7.6432 2.9979 12 7 2.0808 -8.0189 4.4125 13 6 2.4179 -9.2886 4.7993 14 1 2.7343 -10.0116 4.0620 15 6 2.3528 -9.6464 6.1389 16 7 1.9666 -8.7653 7.0373 17 14 2.8133 -11.3781 6.6666 18 1 4.2640 -11.4309 6.9795 19 1 2.0328 -11.7519 7.8734 20 1 2.5092 -12.3281 5.5666 21 7 0.4680 -5.7487 2.7218 22 7 0.5014 -4.4679 2.6071 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6769 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 1.9490 -2.5917 0.4007 33 1 0.4957 -2.0777 1.2906 34 1 1.7863 -2.0982 3.4083 35 1 3.2392 -2.6120 2.5176 36 1 3.6076 -5.1151 2.8695 37 1 3.1646 -7.7626 2.6353 38 1 1.4762 -8.2839 2.4217 39 1 1.7962 -7.3697 5.0746 40 1 1.9215 -9.0152 7.9735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603212429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:53 Heat of formation + Delta-G solvation = 60.318185 kcal Electronic energy + Delta-G solvation = -19941.676415 eV Core-core repulsion = 16794.455168 eV Total energy + Delta-G solvation = -3147.221247 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.94954 -39.51166 -35.61909 -34.58417 -33.47165 -31.80788 -30.06224 -29.48066 -27.83543 -27.81293 -25.76537 -24.22536 -22.78624 -21.49876 -20.45635 -20.38011 -17.54168 -17.12224 -16.59238 -16.31290 -15.90204 -15.21510 -14.64342 -14.60370 -14.49420 -13.83531 -13.63603 -13.21968 -13.05861 -12.89202 -12.60859 -12.52332 -12.28864 -12.16234 -12.12505 -11.89705 -11.49877 -11.22912 -10.93130 -10.86999 -10.78634 -10.42916 -10.07623 -9.95292 -9.85360 -9.69316 -8.86427 -8.82332 -6.89212 -5.71432 -3.01129 1.82506 2.24580 2.92476 3.39184 3.47478 3.52465 3.54764 4.25976 4.34514 4.42061 4.54922 4.61655 4.65201 4.77768 4.86300 5.05588 5.10913 5.15519 5.21652 5.30727 5.35898 5.40030 5.41822 5.44266 5.50555 5.65060 5.66026 5.82255 5.84229 5.88984 6.20200 6.42776 6.67755 6.70977 6.79762 6.84739 7.73381 8.45863 8.84725 9.57516 10.13449 10.49367 11.51388 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.057098 B = 0.002805 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.264282 B = 9979.377326 C =10025.409254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.110 3.890 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.375 6.375 6 C 0.048 3.952 7 C 0.123 3.877 8 N -0.299 5.299 9 C -0.040 4.040 10 C -0.006 4.006 11 C 0.233 3.767 12 N -0.726 5.726 13 C -0.239 4.239 14 H 0.073 0.927 15 C -0.014 4.014 16 N -0.932 5.932 17 Si 0.910 3.090 18 H -0.290 1.290 19 H -0.292 1.292 20 H -0.281 1.281 21 N -0.252 5.252 22 N -0.098 5.098 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.190 0.810 37 H 0.038 0.962 38 H 0.039 0.961 39 H 0.386 0.614 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.174 21.036 -16.291 26.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.071 3.929 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.294 6.294 6 C -0.030 4.030 7 C 0.001 3.999 8 N -0.094 5.094 9 C -0.190 4.190 10 C -0.144 4.144 11 C 0.104 3.896 12 N -0.371 5.371 13 C -0.370 4.370 14 H 0.091 0.909 15 C -0.210 4.210 16 N -0.581 5.581 17 Si 0.741 3.259 18 H -0.217 1.217 19 H -0.218 1.218 20 H -0.207 1.207 21 N -0.120 5.120 22 N -0.077 5.077 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.130 0.870 36 H 0.207 0.793 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.219 0.781 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 0.860 21.398 -16.302 26.914 hybrid contribution 1.163 -0.981 0.563 1.623 sum 2.023 20.417 -15.738 25.858 Atomic orbital electron populations 1.22460 0.95384 1.03015 1.03056 1.21528 0.93403 0.93077 0.84871 1.21764 1.02013 0.93022 1.02667 1.22457 1.02284 1.01207 0.97887 1.87863 1.74646 1.23006 1.43855 1.22602 1.00323 0.83511 0.96569 1.21650 1.01731 0.76631 0.99921 1.47073 1.05904 1.08115 1.48283 1.23444 0.99580 0.85980 1.09992 1.22491 0.88954 0.98364 1.04574 1.18947 0.97530 0.84171 0.88967 1.42321 1.81342 1.12514 1.00927 1.19234 1.37275 0.88586 0.91939 0.90876 1.24769 1.02285 0.98037 0.95910 1.69687 1.53653 1.33698 1.01028 0.86149 0.77748 0.84101 0.77936 1.21742 1.21804 1.20671 1.75098 1.21360 1.00157 1.15338 1.78237 1.01555 1.07369 1.20508 0.91446 0.91342 0.91845 0.91697 0.90972 0.91634 0.92061 0.91281 0.91561 0.92194 0.90988 0.87672 0.87017 0.79289 0.94443 0.94324 0.78090 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 8.25 37.16 0.31 -0.98 16 2 C 0.11 0.82 1.14 -90.62 -0.10 0.72 16 3 C -0.14 -0.82 8.84 37.15 0.33 -0.49 16 4 C -0.18 -1.21 8.25 37.16 0.31 -0.90 16 5 O -0.37 -3.48 9.99 -35.23 -0.35 -3.83 16 6 C 0.05 0.45 5.26 37.16 0.20 0.65 16 7 C 0.12 1.22 6.82 -4.05 -0.03 1.20 16 8 N -0.30 -4.31 3.44 -61.27 -0.21 -4.52 16 9 C -0.04 -0.61 11.50 -17.04 -0.20 -0.80 16 10 C -0.01 -0.12 6.61 -82.78 -0.55 -0.66 16 11 C 0.23 4.97 6.82 -5.19 -0.04 4.93 16 12 N -0.73 -19.29 5.59 -61.09 -0.34 -19.63 16 13 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 14 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 15 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 16 N -0.93 -29.06 13.06 55.49 0.72 -28.34 16 17 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 N -0.25 -5.22 12.41 33.29 0.41 -4.81 16 22 N -0.10 -1.75 12.92 60.35 0.78 -0.97 16 23 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.50 6.54 -51.93 -0.34 0.16 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.45 6.54 -51.93 -0.34 0.11 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.56 6.42 -51.93 -0.33 0.23 16 33 H 0.07 0.75 6.39 -51.93 -0.33 0.42 16 34 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 0.84 8.07 -51.93 -0.42 0.43 16 36 H 0.19 2.23 8.06 -52.49 -0.42 1.81 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.39 11.06 7.66 -40.82 -0.31 10.74 16 40 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 334.51 15.07 5.04 5.04 Total: -1.00 -34.12 334.51 -5.26 -39.39 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -6.27 Total: 3.82 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.02 Total: -3.84 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 1.36 Total: -58.27 kcal Atomic # 8 Polarization: -3.48 SS G_CDS: -0.35 Total: -3.83 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.12 -5.26 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603212429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.704 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds