Wall clock time and date at job start Mon Mar 30 2020 00:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47487 * 2 1 4 4 C 1.53003 * 109.47154 * 239.99844 * 2 1 3 5 5 O 1.42907 * 109.46896 * 120.00193 * 2 1 3 6 6 C 1.42901 * 113.99741 * 59.99575 * 5 2 1 7 7 C 1.52996 * 109.46882 * 179.97438 * 6 5 2 8 8 N 1.46494 * 109.47251 * 180.02562 * 7 6 5 9 9 C 1.35317 * 125.87155 * 125.32590 * 8 7 6 10 10 C 1.35352 * 106.17693 * 180.11507 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.36943 * 119.99752 * 179.72432 * 12 11 10 14 14 H 1.08002 * 119.99793 * 0.27665 * 13 12 11 15 15 C 1.38811 * 120.00012 * 180.27737 * 13 12 11 16 16 N 1.31624 * 119.99698 * 0.02562 * 15 13 12 17 17 Si 1.86795 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47294 * 90.00155 * 17 15 13 19 19 H 1.48499 * 109.47218 * 210.00015 * 17 15 13 20 20 H 1.48496 * 109.47166 * 329.99846 * 17 15 13 21 21 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 22 22 N 1.28636 * 108.88627 * 0.25926 * 21 10 9 23 23 H 1.08997 * 109.47039 * 300.00110 * 1 2 3 24 24 H 1.09005 * 109.46476 * 59.99403 * 1 2 3 25 25 H 1.08994 * 109.47446 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47381 * 179.97438 * 3 2 1 27 27 H 1.08995 * 109.47596 * 299.99858 * 3 2 1 28 28 H 1.09007 * 109.47195 * 59.99856 * 3 2 1 29 29 H 1.09000 * 109.47014 * 300.00864 * 4 2 1 30 30 H 1.08998 * 109.46759 * 60.00272 * 4 2 1 31 31 H 1.08997 * 109.46931 * 180.02562 * 4 2 1 32 32 H 1.09006 * 109.47367 * 60.00305 * 6 5 2 33 33 H 1.08997 * 109.47462 * 300.00291 * 6 5 2 34 34 H 1.08998 * 109.47402 * 60.00298 * 7 6 5 35 35 H 1.09000 * 109.47186 * 299.99892 * 7 6 5 36 36 H 1.08002 * 126.91295 * 359.96910 * 9 8 7 37 37 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 38 38 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 39 39 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 40 40 H 0.96999 * 119.99739 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1668 6 6 1.5845 -2.0356 1.2645 7 6 2.1503 -2.6541 2.5443 8 7 1.7185 -4.0504 2.6442 9 6 2.5299 -5.1223 2.7980 10 6 1.7197 -6.2056 2.8408 11 6 2.1436 -7.6432 2.9979 12 7 2.0808 -8.0189 4.4125 13 6 2.4179 -9.2886 4.7993 14 1 2.7343 -10.0116 4.0620 15 6 2.3528 -9.6464 6.1389 16 7 1.9666 -8.7653 7.0373 17 14 2.8133 -11.3781 6.6666 18 1 4.2640 -11.4309 6.9795 19 1 2.0328 -11.7519 7.8734 20 1 2.5092 -12.3281 5.5666 21 7 0.4680 -5.7487 2.7218 22 7 0.5014 -4.4679 2.6071 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5140 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1301 1.4424 0.0005 27 1 1.6769 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2493 30 1 1.6767 -0.2074 -2.1392 31 1 3.1300 -0.7217 -1.2490 32 1 1.9490 -2.5917 0.4007 33 1 0.4957 -2.0777 1.2906 34 1 1.7863 -2.0982 3.4083 35 1 3.2392 -2.6120 2.5176 36 1 3.6076 -5.1151 2.8695 37 1 3.1646 -7.7626 2.6353 38 1 1.4762 -8.2839 2.4217 39 1 1.7962 -7.3697 5.0746 40 1 1.9215 -9.0152 7.9735 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603212429.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:52 Heat of formation + Delta-G solvation = 36.097889 kcal Electronic energy + Delta-G solvation = -19942.726686 eV Core-core repulsion = 16794.455168 eV Total energy + Delta-G solvation = -3148.271518 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.164 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.25948 -40.16121 -37.02901 -36.06358 -34.33844 -33.62156 -31.64770 -30.59189 -28.36210 -28.36080 -27.57872 -25.20098 -24.72159 -22.77882 -21.72202 -21.05347 -19.32811 -18.35309 -17.65277 -17.17779 -16.70861 -16.62058 -15.96566 -15.84987 -15.54874 -15.22890 -15.05160 -14.37055 -14.32209 -13.91959 -13.54274 -13.50927 -13.10179 -12.97105 -12.84816 -12.77189 -12.72035 -12.67821 -12.52743 -12.15281 -12.07610 -11.87189 -11.79455 -11.51099 -11.06596 -10.94723 -10.60917 -10.22568 -9.01382 -7.92609 -5.23158 0.58681 1.23338 1.45097 1.51910 1.53215 1.62032 2.60387 2.65480 3.33326 3.41075 3.61996 3.69515 3.86724 3.92135 3.99344 4.05931 4.13237 4.21467 4.25770 4.31600 4.44934 4.58655 4.64184 4.70390 4.78750 4.85482 4.89129 4.91196 4.92720 5.13010 5.14180 5.18725 5.30452 5.34348 5.51858 5.63178 6.13023 6.27181 7.33802 7.49146 8.05236 8.31034 9.31495 Molecular weight = 268.16amu Principal moments of inertia in cm(-1) A = 0.057098 B = 0.002805 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.264282 B = 9979.377326 C =10025.409254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.102 3.898 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.383 6.383 6 C 0.056 3.944 7 C 0.115 3.885 8 N -0.284 5.284 9 C -0.014 4.014 10 C -0.039 4.039 11 C 0.236 3.764 12 N -0.740 5.740 13 C -0.243 4.243 14 H 0.085 0.915 15 C -0.080 4.080 16 N -0.974 5.974 17 Si 0.980 3.020 18 H -0.282 1.282 19 H -0.299 1.299 20 H -0.267 1.267 21 N -0.296 5.296 22 N -0.113 5.113 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.112 0.888 35 H 0.146 0.854 36 H 0.231 0.769 37 H 0.065 0.935 38 H 0.029 0.971 39 H 0.370 0.630 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.811 21.825 -17.498 28.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.063 3.937 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.302 6.302 6 C -0.022 4.022 7 C -0.005 4.005 8 N -0.079 5.079 9 C -0.165 4.165 10 C -0.178 4.178 11 C 0.108 3.892 12 N -0.383 5.383 13 C -0.374 4.374 14 H 0.103 0.897 15 C -0.271 4.271 16 N -0.625 5.625 17 Si 0.809 3.191 18 H -0.209 1.209 19 H -0.226 1.226 20 H -0.192 1.192 21 N -0.163 5.163 22 N -0.092 5.092 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.130 0.870 35 H 0.164 0.836 36 H 0.248 0.752 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.201 0.799 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.494 22.212 -17.571 28.431 hybrid contribution 0.664 -1.076 0.832 1.514 sum 3.158 21.136 -16.739 27.146 Atomic orbital electron populations 1.22458 0.95362 1.02380 1.03617 1.21766 0.93552 0.93806 0.84571 1.21784 1.02051 0.92026 1.03395 1.22440 1.02332 1.00716 0.98105 1.87848 1.74767 1.22652 1.44932 1.22427 0.99453 0.83980 0.96348 1.22064 1.03772 0.74199 1.00455 1.47379 1.04859 1.09606 1.46031 1.23912 1.00944 0.84809 1.06879 1.22330 0.89559 0.98451 1.07416 1.18978 0.98614 0.85584 0.86007 1.42537 1.81212 1.11709 1.02825 1.19711 1.35776 0.89600 0.92326 0.89676 1.25668 1.03174 1.02178 0.96127 1.69864 1.55746 1.35852 1.01027 0.85039 0.77399 0.79406 0.77285 1.20905 1.22598 1.19191 1.75031 1.22769 1.01532 1.17000 1.78145 1.03253 1.06436 1.21332 0.91942 0.89758 0.93058 0.91631 0.89203 0.92000 0.93011 0.89833 0.91425 0.92012 0.92387 0.86952 0.83641 0.75233 0.91723 0.95310 0.79855 0.94083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.25 71.98 0.59 -1.78 16 2 C 0.10 1.35 1.14 -10.79 -0.01 1.34 16 3 C -0.14 -1.36 8.84 71.98 0.64 -0.72 16 4 C -0.18 -2.07 8.25 71.98 0.59 -1.48 16 5 O -0.38 -6.48 9.99 -148.98 -1.49 -7.96 16 6 C 0.06 0.98 5.26 71.98 0.38 1.36 16 7 C 0.12 2.02 6.82 86.38 0.59 2.61 16 8 N -0.28 -7.71 3.44 -347.75 -1.20 -8.91 16 9 C -0.01 -0.39 11.50 83.49 0.96 0.57 16 10 C -0.04 -1.49 6.61 41.60 0.28 -1.22 16 11 C 0.24 9.94 6.82 85.63 0.58 10.52 16 12 N -0.74 -39.44 5.59 -347.18 -1.94 -41.39 16 13 C -0.24 -13.78 9.99 84.03 0.84 -12.94 16 14 H 0.09 4.52 7.83 -2.91 -0.02 4.49 16 15 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 16 N -0.97 -61.67 13.06 21.65 0.28 -61.39 16 17 Si 0.98 46.73 29.55 68.60 2.03 48.76 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 N -0.30 -12.42 12.41 -48.60 -0.60 -13.03 16 22 N -0.11 -4.02 12.92 37.02 0.48 -3.54 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.05 0.79 6.54 -2.39 -0.02 0.78 16 26 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.05 0.70 6.54 -2.39 -0.02 0.68 16 30 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 32 H 0.06 1.07 6.42 -2.38 -0.02 1.05 16 33 H 0.06 1.19 6.39 -2.39 -0.02 1.17 16 34 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.15 1.63 8.07 -2.39 -0.02 1.61 16 36 H 0.23 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 38 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.37 21.64 7.66 -92.71 -0.71 20.93 16 40 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -74.44 334.51 3.78 -70.66 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.32 Total: 22.75 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 5.91 Total: -5.95 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -2.98 Total: -128.25 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -1.49 Total: -7.96 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 2.03 Total: 48.76 kcal Total: -74.44 3.78 -70.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603212429.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.756 kcal (2) G-P(sol) polarization free energy of solvation -74.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds