Wall clock time and date at job start Mon Mar 30 2020 01:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00159 * 2 1 4 4 H 1.48499 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47280 * 300.00435 * 3 2 1 6 6 H 1.48505 * 109.46740 * 60.00242 * 3 2 1 7 7 C 1.37877 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99909 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00026 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.47276 * 180.02562 * 9 7 2 11 11 C 1.44256 * 110.99921 * 293.95693 * 10 9 7 12 12 C 1.54252 * 108.64345 * 219.84604 * 11 10 9 13 13 C 1.46134 * 111.90613 * 281.38228 * 12 11 10 14 14 N 1.48112 * 112.11928 * 60.90588 * 13 12 11 15 15 C 1.46900 * 110.99982 * 156.44665 * 14 13 12 16 16 C 1.52999 * 109.47105 * 66.04555 * 15 14 13 17 17 H 1.08999 * 110.27480 * 59.29605 * 16 15 14 18 18 C 1.54942 * 110.30949 * 181.39232 * 16 15 14 19 19 C 1.55422 * 100.89581 * 155.28657 * 18 16 15 20 20 C 1.54376 * 102.30785 * 325.99052 * 19 18 16 21 21 O 1.43244 * 107.59159 * 21.28273 * 20 19 18 22 22 C 1.44325 * 109.94218 * 279.59221 * 14 13 12 23 23 C 1.48198 * 110.99938 * 62.18806 * 10 9 7 24 24 H 0.97001 * 119.99665 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46522 * 60.00332 * 9 7 2 26 26 H 1.09000 * 109.47107 * 300.00363 * 9 7 2 27 27 H 1.08998 * 109.60926 * 100.09860 * 11 10 9 28 28 H 1.09000 * 109.60557 * 339.59401 * 11 10 9 29 29 H 1.08997 * 108.99704 * 160.75601 * 12 11 10 30 30 H 1.09006 * 108.92820 * 41.95956 * 12 11 10 31 31 H 1.09002 * 108.93847 * 181.56105 * 13 12 11 32 32 H 1.09001 * 108.93845 * 300.25348 * 13 12 11 33 33 H 1.08994 * 109.47571 * 186.04598 * 15 14 13 34 34 H 1.09002 * 109.46805 * 306.04928 * 15 14 13 35 35 H 1.08997 * 111.12873 * 273.27829 * 18 16 15 36 36 H 1.08998 * 111.12869 * 37.44016 * 18 16 15 37 37 H 1.08997 * 110.88519 * 207.75276 * 19 18 16 38 38 H 1.08998 * 110.93327 * 84.24895 * 19 18 16 39 39 H 1.09001 * 109.83258 * 261.77026 * 20 19 18 40 40 H 1.08999 * 109.83436 * 140.79555 * 20 19 18 41 41 H 1.09000 * 108.91332 * 333.24717 * 22 14 13 42 42 H 1.09000 * 108.82437 * 214.72362 * 22 14 13 43 43 H 1.08995 * 108.82896 * 312.54260 * 23 10 9 44 44 H 1.09010 * 108.81869 * 70.84013 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 2.9572 -3.6533 -1.2313 12 6 3.1203 -5.1246 -1.6647 13 6 4.1717 -5.8023 -0.9091 14 7 3.8841 -5.8313 0.5435 15 6 4.5944 -6.9377 1.1988 16 6 6.1022 -6.6870 1.1311 17 1 6.3515 -5.7479 1.6252 18 6 6.8725 -7.8607 1.7866 19 6 8.2447 -7.7509 1.0650 20 6 7.8383 -7.2653 -0.3429 21 8 6.5428 -6.6633 -0.2359 22 6 4.2373 -4.5657 1.1406 23 6 3.0414 -3.5999 1.2232 24 1 -0.4850 0.8401 0.0004 25 1 0.6242 -2.5566 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.9393 -3.2073 -1.0739 28 1 2.4217 -3.1015 -2.0038 29 1 3.3690 -5.1566 -2.7255 30 1 2.1767 -5.6467 -1.5060 31 1 4.2644 -6.8260 -1.2719 32 1 5.1158 -5.2826 -1.0725 33 1 4.2833 -7.0024 2.2414 34 1 4.3584 -7.8726 0.6905 35 1 6.9787 -7.7098 2.8608 36 1 6.3917 -8.8150 1.5715 37 1 8.7355 -8.7228 1.0135 38 1 8.8861 -7.0200 1.5573 39 1 7.7972 -8.1116 -1.0285 40 1 8.5586 -6.5308 -0.7030 41 1 5.0243 -4.1019 0.5460 42 1 4.6157 -4.7450 2.1470 43 1 3.4163 -2.5886 1.3801 44 1 2.4221 -3.8793 2.0757 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603847904.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:52 Heat of formation + Delta-G solvation = -32.103309 kcal Electronic energy + Delta-G solvation = -21888.800091 eV Core-core repulsion = 18841.111491 eV Total energy + Delta-G solvation = -3047.688600 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.02348 -38.28976 -35.51583 -32.84223 -32.33392 -31.92184 -30.33204 -27.99951 -26.23864 -24.80477 -24.21115 -22.22538 -21.83908 -21.40753 -19.73120 -18.92898 -17.05524 -16.29003 -16.13353 -15.68739 -15.28484 -14.79297 -14.59474 -14.31926 -13.79452 -13.45792 -13.14344 -12.88838 -12.69434 -12.51222 -12.13364 -12.00417 -11.85408 -11.71748 -11.36750 -11.17357 -11.03514 -10.93129 -10.77626 -10.53930 -10.35148 -10.19215 -10.04767 -9.93209 -9.66223 -9.61521 -9.34175 -8.36685 -7.80535 -6.84631 -5.93552 -4.04398 3.29455 3.37463 3.41017 3.61690 4.23152 4.34533 4.45484 4.53029 4.66397 4.92654 4.99383 5.17137 5.29540 5.34342 5.36476 5.42344 5.44870 5.51007 5.56636 5.64497 5.74269 5.82115 5.90697 5.92449 6.02063 6.10150 6.21002 6.40077 6.43584 6.55590 6.76893 6.84886 6.88892 6.93102 7.06307 7.48753 7.53224 7.60404 7.63875 7.98872 8.27311 8.44050 8.66838 9.09008 9.62312 11.09024 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031242 B = 0.004301 C = 0.004158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.019658 B = 6508.666543 C = 6732.847777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.064 3.936 3 Si 0.886 3.114 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.545 4.545 8 H 0.054 0.946 9 C 0.191 3.809 10 N -0.542 5.542 11 C 0.083 3.917 12 C -0.119 4.119 13 C 0.076 3.924 14 N -0.511 5.511 15 C 0.059 3.941 16 C 0.041 3.959 17 H 0.070 0.930 18 C -0.148 4.148 19 C -0.156 4.156 20 C 0.047 3.953 21 O -0.369 6.369 22 C 0.057 3.943 23 C 0.077 3.923 24 H 0.261 0.739 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.022 0.978 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.057 0.943 43 H 0.045 0.955 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.722 -16.115 2.152 21.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.714 3.286 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.585 4.585 8 H 0.073 0.927 9 C 0.065 3.935 10 N -0.265 5.265 11 C -0.047 4.047 12 C -0.158 4.158 13 C -0.051 4.051 14 N -0.233 5.233 15 C -0.070 4.070 16 C -0.018 4.018 17 H 0.087 0.913 18 C -0.187 4.187 19 C -0.193 4.193 20 C -0.030 4.030 21 O -0.288 6.288 22 C -0.072 4.072 23 C -0.052 4.052 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.040 0.960 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.063 0.937 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.670 -16.392 2.053 21.442 hybrid contribution 2.072 1.858 0.108 2.785 sum 15.742 -14.533 2.162 21.534 Atomic orbital electron populations 1.69960 1.05963 1.26542 1.50549 1.24971 0.94741 0.99016 0.95127 0.86633 0.80119 0.84200 0.77612 1.19969 1.20989 1.21005 1.21868 0.93244 0.92302 1.51047 0.92748 1.19786 0.90791 0.85250 0.97665 1.60872 1.19039 1.46575 1.00064 1.21467 0.96267 0.93760 0.93159 1.20734 0.99973 0.97814 0.97256 1.21000 0.97121 0.99947 0.87022 1.61720 1.55657 1.02486 1.03478 1.22565 0.88133 0.95987 1.00319 1.23974 0.97137 0.97858 0.82865 0.91256 1.23275 0.95198 0.99526 1.00658 1.23114 0.97916 1.02226 0.96081 1.23104 0.85841 0.97323 0.96707 1.88604 1.32840 1.81106 1.26285 1.22019 0.97073 0.90195 0.97892 1.22239 0.93022 0.96217 0.93721 0.92966 0.95240 0.95447 0.96017 0.91783 0.92844 0.91008 0.92384 0.94075 0.89708 0.90446 0.90051 0.90217 0.90292 0.90790 0.91602 0.91843 0.94950 0.92472 0.93707 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.55 -15.34 7.63 -34.44 -0.26 -15.60 16 8 H 0.05 1.53 6.77 -52.48 -0.36 1.18 16 9 C 0.19 5.09 4.89 -4.98 -0.02 5.06 16 10 N -0.54 -12.22 4.32 -235.70 -1.02 -13.24 16 11 C 0.08 1.73 4.64 -4.58 -0.02 1.71 16 12 C -0.12 -2.06 5.66 -29.34 -0.17 -2.23 16 13 C 0.08 1.20 3.55 -6.41 -0.02 1.18 16 14 N -0.51 -8.04 4.62 -239.17 -1.11 -9.14 16 15 C 0.06 0.72 4.97 -3.82 -0.02 0.70 16 16 C 0.04 0.45 3.09 -25.71 -0.08 0.37 16 17 H 0.07 0.83 6.78 -51.93 -0.35 0.48 16 18 C -0.15 -1.20 6.58 -24.42 -0.16 -1.36 16 19 C -0.16 -1.17 7.02 -24.72 -0.17 -1.35 16 20 C 0.05 0.44 7.80 37.88 0.30 0.74 16 21 O -0.37 -4.64 7.91 -35.23 -0.28 -4.92 16 22 C 0.06 0.95 3.91 -4.71 -0.02 0.94 16 23 C 0.08 1.57 5.62 -2.62 -0.01 1.55 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.03 0.84 7.90 -51.93 -0.41 0.43 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.02 0.46 6.96 -51.93 -0.36 0.10 16 28 H 0.06 1.43 7.45 -51.93 -0.39 1.04 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 31 H 0.06 0.87 7.53 -51.93 -0.39 0.48 16 32 H 0.04 0.69 5.95 -51.93 -0.31 0.38 16 33 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.08 0.91 7.91 -51.93 -0.41 0.50 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.57 6.54 -51.93 -0.34 0.23 16 42 H 0.06 0.83 6.96 -51.93 -0.36 0.46 16 43 H 0.04 1.01 6.30 -51.93 -0.33 0.68 16 44 H 0.06 1.19 8.14 -51.92 -0.42 0.76 16 LS Contribution 326.60 15.07 4.92 4.92 Total: -1.00 -30.43 326.60 -10.31 -40.74 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -7.78 Total: -2.59 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -0.77 Total: -6.57 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -1.39 Total: -48.36 kcal Atomic # 8 Polarization: -4.64 SS G_CDS: -0.28 Total: -4.92 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.43 -10.31 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603847904.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.635 kcal (2) G-P(sol) polarization free energy of solvation -30.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds