Wall clock time and date at job start Mon Mar 30 2020 01:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99632 * 2 1 4 4 H 1.48493 * 109.46975 * 269.99626 * 3 2 1 5 5 H 1.48493 * 109.47301 * 30.00140 * 3 2 1 6 6 H 1.48497 * 109.46743 * 149.99983 * 3 2 1 7 7 C 1.37872 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99568 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00331 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47271 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47111 * 180.02562 * 10 9 7 12 12 C 1.46955 * 110.99645 * 46.18027 * 11 10 9 13 13 C 1.53053 * 109.36335 * 183.16869 * 12 11 10 14 14 N 1.46961 * 109.38225 * 301.63262 * 13 12 11 15 15 C 1.46899 * 111.00384 * 183.17324 * 14 13 12 16 16 H 1.08998 * 110.43426 * 300.14909 * 15 14 13 17 17 C 1.54267 * 110.48793 * 177.59640 * 15 14 13 18 18 C 1.53866 * 106.59881 * 217.71554 * 17 15 14 19 19 C 1.54267 * 106.60349 * 0.02562 * 18 17 15 20 20 C 1.54893 * 104.19298 * 23.61040 * 19 18 17 21 21 H 1.09001 * 110.75418 * 80.37230 * 20 19 18 22 22 O 1.42901 * 110.75809 * 203.74640 * 20 19 18 23 23 C 1.46960 * 110.87906 * 59.30982 * 14 13 12 24 24 C 1.46952 * 110.99978 * 170.00295 * 11 10 9 25 25 H 0.97006 * 120.00142 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46633 * 59.99775 * 9 7 2 27 27 H 1.08996 * 109.47048 * 300.00611 * 9 7 2 28 28 H 1.09006 * 109.46811 * 60.00138 * 10 9 7 29 29 H 1.08998 * 109.47515 * 299.99956 * 10 9 7 30 30 H 1.08999 * 109.47233 * 63.21293 * 12 11 10 31 31 H 1.08999 * 109.50993 * 303.14163 * 12 11 10 32 32 H 1.08994 * 109.49252 * 181.65661 * 13 12 11 33 33 H 1.09001 * 109.49011 * 61.60788 * 13 12 11 34 34 H 1.09000 * 110.03045 * 337.00008 * 17 15 14 35 35 H 1.09000 * 110.02838 * 98.38545 * 17 15 14 36 36 H 1.09004 * 110.03604 * 119.29063 * 18 17 15 37 37 H 1.09007 * 110.03288 * 240.71799 * 18 17 15 38 38 H 1.09002 * 110.49085 * 142.28831 * 19 18 17 39 39 H 1.09001 * 110.48984 * 264.93801 * 19 18 17 40 40 H 0.96708 * 113.99674 * 293.32981 * 22 20 19 41 41 H 1.08997 * 109.49133 * 60.64664 * 23 14 13 42 42 H 1.08995 * 109.48799 * 180.69467 * 23 14 13 43 43 H 1.09004 * 109.49080 * 56.84692 * 24 11 10 44 44 H 1.09003 * 109.49273 * 296.77689 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0014 11 7 5.4906 -2.6364 0.0014 12 6 6.0171 -1.6855 0.9904 13 6 7.5449 -1.6576 0.9043 14 7 8.0717 -3.0085 1.1438 15 6 9.5407 -3.0085 1.1438 16 1 9.9212 -2.6576 0.1845 17 6 10.0806 -4.4196 1.4555 18 6 11.3271 -4.2285 2.3370 19 6 11.5010 -2.7079 2.5309 20 6 10.0822 -2.1310 2.2999 21 1 9.4682 -2.2462 3.1931 22 8 10.1513 -0.7594 1.9046 23 6 7.5451 -3.9590 0.1543 24 6 6.0172 -3.9873 0.2409 25 1 -0.4851 0.8401 0.0004 26 1 3.8752 -0.6795 0.8895 27 1 3.8745 -0.6807 -0.8904 28 1 3.6579 -3.1512 -0.8880 29 1 3.6586 -3.1493 0.8920 30 1 5.7149 -1.9967 1.9904 31 1 5.6231 -0.6903 0.7842 32 1 7.9393 -0.9749 1.6569 33 1 7.8472 -1.3200 -0.0871 34 1 9.3282 -4.9970 1.9928 35 1 10.3511 -4.9286 0.5303 36 1 11.1799 -4.7131 3.3022 37 1 12.2035 -4.6444 1.8398 38 1 11.8418 -2.4888 3.5428 39 1 12.1998 -2.3071 1.7967 40 1 10.4847 -0.1680 2.5933 41 1 7.8470 -3.6476 -0.8456 42 1 7.9397 -4.9540 0.3601 43 1 5.6230 -4.6701 -0.5118 44 1 5.7154 -4.3248 1.2324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609572669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:01 Heat of formation + Delta-G solvation = -46.657189 kcal Electronic energy + Delta-G solvation = -21428.150803 eV Core-core repulsion = 18379.831099 eV Total energy + Delta-G solvation = -3048.319704 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87346 -38.08924 -35.68107 -34.65463 -32.77099 -30.89223 -30.22760 -28.11354 -27.78508 -25.37371 -23.57538 -23.07906 -20.77177 -20.51036 -19.85298 -19.30671 -17.68188 -17.01335 -16.41289 -15.38216 -14.89241 -14.63590 -14.58317 -14.48154 -14.16491 -13.94422 -13.62487 -13.53599 -12.64314 -12.58866 -12.49349 -12.46366 -11.96213 -11.66934 -11.51894 -11.44847 -11.04006 -10.97941 -10.87436 -10.75867 -10.49551 -10.42093 -10.10529 -10.02207 -9.71726 -9.64880 -9.12229 -8.50976 -8.30416 -7.74788 -6.02310 -4.00275 3.34214 3.40920 3.44983 3.74820 3.99246 4.24687 4.44705 4.47890 4.54718 4.70074 5.06349 5.10016 5.14883 5.19274 5.27926 5.32019 5.36776 5.45539 5.50646 5.56557 5.62398 5.70114 5.72532 5.79383 5.87392 5.91406 5.97994 6.02923 6.15408 6.20276 6.31832 6.38564 6.44495 6.78055 7.08487 7.11761 7.21692 7.37879 7.45541 7.60899 7.68979 7.88614 8.55574 9.01905 9.60145 11.11104 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.004087 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.807703 B = 6849.749928 C = 7560.662789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.014 4.014 10 C 0.071 3.929 11 N -0.544 5.544 12 C 0.053 3.947 13 C 0.061 3.939 14 N -0.533 5.533 15 C 0.088 3.912 16 H 0.053 0.947 17 C -0.118 4.118 18 C -0.119 4.119 19 C -0.156 4.156 20 C 0.104 3.896 21 H 0.074 0.926 22 O -0.561 6.561 23 C 0.058 3.942 24 C 0.057 3.943 25 H 0.263 0.737 26 H 0.018 0.982 27 H 0.020 0.980 28 H 0.068 0.932 29 H 0.026 0.974 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.376 0.624 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.481 -7.141 5.354 26.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.055 4.055 11 N -0.270 5.270 12 C -0.075 4.075 13 C -0.067 4.067 14 N -0.258 5.258 15 C -0.021 4.021 16 H 0.071 0.929 17 C -0.156 4.156 18 C -0.157 4.157 19 C -0.194 4.194 20 C 0.045 3.955 21 H 0.092 0.908 22 O -0.366 6.366 23 C -0.070 4.070 24 C -0.071 4.071 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.223 0.777 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 24.072 -7.283 4.785 25.601 hybrid contribution 0.521 1.075 0.485 1.289 sum 24.593 -6.208 5.270 25.906 Atomic orbital electron populations 1.69918 1.06303 1.26878 1.51229 1.25001 0.94722 0.99164 0.94520 0.86753 0.80289 0.83519 0.78580 1.20224 1.21453 1.19021 1.21081 0.89382 0.94521 1.50851 0.91093 1.19703 0.96811 0.91933 0.96699 1.22104 0.83472 1.00192 0.99779 1.62297 1.09889 1.05947 1.48828 1.22258 0.93167 0.98177 0.93922 1.22238 0.94660 0.89198 1.00592 1.62307 1.05696 1.08346 1.49472 1.22390 0.87949 0.94546 0.97227 0.92917 1.22164 0.97350 0.96022 1.00072 1.21984 0.97931 0.95668 1.00117 1.23004 0.98023 0.96421 1.01951 1.22846 0.94454 0.81055 0.97184 0.90803 1.86553 1.88477 1.17716 1.43903 1.22162 0.95162 0.96035 0.93623 1.22097 0.93517 0.91580 0.99930 0.92746 0.96345 0.96215 0.91404 0.95532 0.94544 0.89344 0.89634 0.94343 0.90206 0.91546 0.91468 0.91635 0.91388 0.90813 0.77668 0.94277 0.90706 0.90682 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.14 9.66 -34.44 -0.33 -15.47 16 8 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 9 C -0.01 -0.34 3.30 -27.89 -0.09 -0.44 16 10 C 0.07 1.51 5.22 -3.82 -0.02 1.49 16 11 N -0.54 -10.00 4.86 -234.46 -1.14 -11.14 16 12 C 0.05 0.94 4.92 -3.77 -0.02 0.92 16 13 C 0.06 0.92 5.20 -3.76 -0.02 0.90 16 14 N -0.53 -7.11 4.54 -224.48 -1.02 -8.13 16 15 C 0.09 0.98 2.34 -66.04 -0.15 0.83 16 16 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 17 C -0.12 -1.04 5.21 -25.62 -0.13 -1.17 16 18 C -0.12 -0.86 6.80 -25.62 -0.17 -1.04 16 19 C -0.16 -1.17 6.55 -25.07 -0.16 -1.34 16 20 C 0.10 1.01 3.23 -24.72 -0.08 0.93 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 22 O -0.56 -5.72 11.72 -35.23 -0.41 -6.14 16 23 C 0.06 0.76 5.37 -3.76 -0.02 0.74 16 24 C 0.06 0.87 5.58 -3.77 -0.02 0.85 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.02 0.45 5.31 -51.93 -0.28 0.18 16 27 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 28 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 29 H 0.03 0.57 8.08 -51.93 -0.42 0.15 16 30 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.70 5.99 -51.93 -0.31 1.39 16 32 H 0.09 1.24 6.06 -51.93 -0.31 0.93 16 33 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.74 7.59 -51.93 -0.39 0.35 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.38 2.25 9.12 45.56 0.42 2.66 16 41 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.82 6.73 -51.93 -0.35 0.47 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 330.75 15.07 4.98 4.98 Total: -1.00 -32.05 330.75 -9.93 -41.99 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.12 Total: -0.66 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -1.33 Total: -10.90 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.38 Total: -46.80 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.41 Total: -6.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.05 -9.93 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609572669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.671 kcal (2) G-P(sol) polarization free energy of solvation -32.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds