Wall clock time and date at job start Mon Mar 30 2020 01:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99632 * 2 1 4 4 H 1.48493 * 109.46975 * 269.99626 * 3 2 1 5 5 H 1.48493 * 109.47301 * 30.00140 * 3 2 1 6 6 H 1.48497 * 109.46743 * 149.99983 * 3 2 1 7 7 C 1.37872 * 120.00282 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99568 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00331 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47271 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47111 * 180.02562 * 10 9 7 12 12 C 1.46955 * 110.99645 * 46.18027 * 11 10 9 13 13 C 1.53053 * 109.36335 * 183.16869 * 12 11 10 14 14 N 1.46961 * 109.38225 * 301.63262 * 13 12 11 15 15 C 1.46899 * 111.00384 * 183.17324 * 14 13 12 16 16 H 1.08998 * 110.43426 * 300.14909 * 15 14 13 17 17 C 1.54267 * 110.48793 * 177.59640 * 15 14 13 18 18 C 1.53866 * 106.59881 * 217.71554 * 17 15 14 19 19 C 1.54267 * 106.60349 * 0.02562 * 18 17 15 20 20 C 1.54893 * 104.19298 * 23.61040 * 19 18 17 21 21 H 1.09001 * 110.75418 * 80.37230 * 20 19 18 22 22 O 1.42901 * 110.75809 * 203.74640 * 20 19 18 23 23 C 1.46960 * 110.87906 * 59.30982 * 14 13 12 24 24 C 1.46952 * 110.99978 * 170.00295 * 11 10 9 25 25 H 0.97006 * 120.00142 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46633 * 59.99775 * 9 7 2 27 27 H 1.08996 * 109.47048 * 300.00611 * 9 7 2 28 28 H 1.09006 * 109.46811 * 60.00138 * 10 9 7 29 29 H 1.08998 * 109.47515 * 299.99956 * 10 9 7 30 30 H 1.08999 * 109.47233 * 63.21293 * 12 11 10 31 31 H 1.08999 * 109.50993 * 303.14163 * 12 11 10 32 32 H 1.08994 * 109.49252 * 181.65661 * 13 12 11 33 33 H 1.09001 * 109.49011 * 61.60788 * 13 12 11 34 34 H 1.09000 * 110.03045 * 337.00008 * 17 15 14 35 35 H 1.09000 * 110.02838 * 98.38545 * 17 15 14 36 36 H 1.09004 * 110.03604 * 119.29063 * 18 17 15 37 37 H 1.09007 * 110.03288 * 240.71799 * 18 17 15 38 38 H 1.09002 * 110.49085 * 142.28831 * 19 18 17 39 39 H 1.09001 * 110.48984 * 264.93801 * 19 18 17 40 40 H 0.96708 * 113.99674 * 293.32981 * 22 20 19 41 41 H 1.08997 * 109.49133 * 60.64664 * 23 14 13 42 42 H 1.08995 * 109.48799 * 180.69467 * 23 14 13 43 43 H 1.09004 * 109.49080 * 56.84692 * 24 11 10 44 44 H 1.09003 * 109.49273 * 296.77689 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6364 0.0014 11 7 5.4906 -2.6364 0.0014 12 6 6.0171 -1.6855 0.9904 13 6 7.5449 -1.6576 0.9043 14 7 8.0717 -3.0085 1.1438 15 6 9.5407 -3.0085 1.1438 16 1 9.9212 -2.6576 0.1845 17 6 10.0806 -4.4196 1.4555 18 6 11.3271 -4.2285 2.3370 19 6 11.5010 -2.7079 2.5309 20 6 10.0822 -2.1310 2.2999 21 1 9.4682 -2.2462 3.1931 22 8 10.1513 -0.7594 1.9046 23 6 7.5451 -3.9590 0.1543 24 6 6.0172 -3.9873 0.2409 25 1 -0.4851 0.8401 0.0004 26 1 3.8752 -0.6795 0.8895 27 1 3.8745 -0.6807 -0.8904 28 1 3.6579 -3.1512 -0.8880 29 1 3.6586 -3.1493 0.8920 30 1 5.7149 -1.9967 1.9904 31 1 5.6231 -0.6903 0.7842 32 1 7.9393 -0.9749 1.6569 33 1 7.8472 -1.3200 -0.0871 34 1 9.3282 -4.9970 1.9928 35 1 10.3511 -4.9286 0.5303 36 1 11.1799 -4.7131 3.3022 37 1 12.2035 -4.6444 1.8398 38 1 11.8418 -2.4888 3.5428 39 1 12.1998 -2.3071 1.7967 40 1 10.4847 -0.1680 2.5933 41 1 7.8470 -3.6476 -0.8456 42 1 7.9397 -4.9540 0.3601 43 1 5.6230 -4.6701 -0.5118 44 1 5.7154 -4.3248 1.2324 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609572669.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:00 Heat of formation + Delta-G solvation = -71.636154 kcal Electronic energy + Delta-G solvation = -21429.233972 eV Core-core repulsion = 18379.831099 eV Total energy + Delta-G solvation = -3049.402873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86977 -39.19938 -36.72972 -35.75035 -34.75261 -32.38687 -31.74992 -29.25914 -28.57627 -26.76759 -25.06997 -24.46868 -22.07140 -21.43712 -20.86921 -20.65660 -19.10110 -18.43615 -17.52124 -16.49166 -16.18709 -16.04459 -15.88666 -15.70940 -15.51278 -15.29353 -14.86388 -14.64152 -14.44561 -13.92023 -13.51420 -13.34263 -13.25535 -12.99727 -12.87372 -12.61644 -12.31330 -12.21301 -12.05381 -11.98655 -11.85826 -11.68231 -11.44432 -11.42474 -11.28925 -11.15732 -10.77953 -10.75688 -9.41537 -9.21661 -8.31935 -6.36363 1.35058 1.35911 1.48353 2.34402 2.80242 2.99890 3.03358 3.30884 3.53440 3.82103 3.94893 4.05483 4.10847 4.21202 4.32766 4.37227 4.41049 4.47123 4.51788 4.53997 4.58169 4.62428 4.70530 4.72874 4.85639 4.90437 4.93265 5.00712 5.02022 5.08519 5.13052 5.18964 5.24735 5.26004 5.41556 5.44269 5.59071 5.98352 6.02109 6.17429 6.24666 6.29413 6.70881 6.91470 7.28287 8.84772 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031745 B = 0.004087 C = 0.003702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.807703 B = 6849.749928 C = 7560.662789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.007 3.993 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.249 1.249 7 C -0.534 4.534 8 H 0.033 0.967 9 C -0.005 4.005 10 C 0.083 3.917 11 N -0.550 5.550 12 C 0.054 3.946 13 C 0.074 3.926 14 N -0.536 5.536 15 C 0.082 3.918 16 H 0.037 0.963 17 C -0.114 4.114 18 C -0.116 4.116 19 C -0.147 4.147 20 C 0.103 3.897 21 H 0.069 0.931 22 O -0.580 6.580 23 C 0.064 3.936 24 C 0.056 3.944 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.393 0.607 41 H 0.032 0.968 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.429 -7.111 5.975 28.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.172 1.172 7 C -0.572 4.572 8 H 0.051 0.949 9 C -0.042 4.042 10 C -0.044 4.044 11 N -0.275 5.275 12 C -0.074 4.074 13 C -0.054 4.054 14 N -0.261 5.261 15 C -0.026 4.026 16 H 0.055 0.945 17 C -0.152 4.152 18 C -0.154 4.154 19 C -0.185 4.185 20 C 0.044 3.956 21 H 0.087 0.913 22 O -0.389 6.389 23 C -0.064 4.064 24 C -0.072 4.072 25 H 0.076 0.924 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.037 0.963 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.243 0.757 41 H 0.051 0.949 42 H 0.121 0.879 43 H 0.104 0.896 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 27.050 -7.268 5.417 28.529 hybrid contribution -0.438 0.993 0.294 1.125 sum 26.612 -6.275 5.711 27.932 Atomic orbital electron populations 1.70060 1.08220 1.28253 1.52446 1.25967 0.95616 1.03427 0.93949 0.85649 0.79435 0.78274 0.79252 1.19216 1.20613 1.17227 1.21392 0.91774 0.93299 1.50741 0.94868 1.19564 0.93788 0.94294 0.96591 1.21819 0.85616 0.97754 0.99250 1.62275 1.07775 1.08018 1.49400 1.22224 0.94943 0.96998 0.93248 1.22036 0.92728 0.90636 1.00005 1.62338 1.07313 1.07133 1.49278 1.22534 0.86263 0.96657 0.97187 0.94497 1.22152 0.97924 0.94309 1.00807 1.21996 0.97524 0.95524 1.00355 1.22941 0.96355 0.96382 1.02871 1.22846 0.95748 0.80901 0.96115 0.91301 1.86503 1.88822 1.18313 1.45240 1.22152 0.93465 0.97436 0.93332 1.22218 0.95071 0.89824 1.00126 0.92364 0.95925 0.96320 0.91793 0.96334 0.95188 0.91088 0.88939 0.95745 0.90460 0.90764 0.90567 0.90435 0.89746 0.91024 0.75682 0.94949 0.87938 0.89616 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.69 13.96 21.45 0.30 -60.39 16 2 C 0.01 0.45 5.47 84.65 0.46 0.91 16 3 Si 0.95 45.63 27.47 68.60 1.88 47.52 16 4 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 6 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 7 C -0.53 -31.86 9.66 25.60 0.25 -31.61 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 9 C 0.00 -0.24 3.30 29.85 0.10 -0.14 16 10 C 0.08 3.54 5.22 86.30 0.45 3.99 16 11 N -0.55 -19.88 4.86 -895.70 -4.35 -24.23 16 12 C 0.05 1.88 4.92 86.31 0.43 2.31 16 13 C 0.07 2.18 5.20 86.31 0.45 2.63 16 14 N -0.54 -13.43 4.54 -864.12 -3.92 -17.35 16 15 C 0.08 1.68 2.34 46.00 0.11 1.79 16 16 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 17 C -0.11 -1.70 5.21 31.32 0.16 -1.54 16 18 C -0.12 -1.31 6.80 31.32 0.21 -1.10 16 19 C -0.15 -1.80 6.55 31.67 0.21 -1.59 16 20 C 0.10 1.80 3.23 31.90 0.10 1.90 16 21 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 22 O -0.58 -10.86 11.72 -148.98 -1.75 -12.61 16 23 C 0.06 1.56 5.37 86.31 0.46 2.02 16 24 C 0.06 1.62 5.58 86.31 0.48 2.10 16 25 H 0.27 15.88 8.31 -92.70 -0.77 15.11 16 26 H 0.02 1.10 5.31 -2.38 -0.01 1.09 16 27 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 28 H 0.06 2.75 8.14 -2.38 -0.02 2.73 16 29 H 0.02 0.81 8.08 -2.39 -0.02 0.79 16 30 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 2.69 5.99 -2.39 -0.01 2.68 16 32 H 0.09 2.58 6.06 -2.39 -0.01 2.57 16 33 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 1.21 7.59 -2.39 -0.02 1.20 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.39 3.96 9.12 -74.05 -0.68 3.29 16 41 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.10 1.95 6.73 -2.39 -0.02 1.93 16 43 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -69.64 330.75 -3.73 -73.37 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.23 Total: 12.02 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 3.87 Total: -18.34 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -7.97 Total: -101.96 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: -1.75 Total: -12.61 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.52 kcal Total: -69.64 -3.73 -73.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609572669.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.734 kcal (2) G-P(sol) polarization free energy of solvation -69.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds