Wall clock time and date at job start Mon Mar 30 2020 01:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00203 * 2 1 4 4 H 1.48509 * 109.46916 * 269.99482 * 3 2 1 5 5 H 1.48494 * 109.47082 * 29.99278 * 3 2 1 6 6 H 1.48498 * 109.47240 * 149.99700 * 3 2 1 7 7 C 1.37880 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47106 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.46832 * 179.97438 * 10 9 7 12 12 C 1.46960 * 111.00056 * 170.00243 * 11 10 9 13 13 C 1.53041 * 109.36849 * 183.19083 * 12 11 10 14 14 N 1.46961 * 109.36409 * 301.59976 * 13 12 11 15 15 C 1.46900 * 110.99839 * 183.18664 * 14 13 12 16 16 H 1.09005 * 110.43798 * 305.05771 * 15 14 13 17 17 C 1.54890 * 110.59874 * 182.44458 * 15 14 13 18 18 C 1.54884 * 102.75150 * 203.32667 * 17 15 14 19 19 C 1.54264 * 104.19383 * 37.93688 * 18 17 15 20 20 C 1.53863 * 106.60067 * 336.39430 * 19 18 17 21 21 H 1.09005 * 110.03349 * 240.70980 * 20 19 18 22 22 O 1.42903 * 110.07516 * 119.30559 * 20 19 18 23 23 C 1.46957 * 110.87998 * 59.32035 * 14 13 12 24 24 C 1.46951 * 111.00358 * 293.80258 * 11 10 9 25 25 H 0.97002 * 119.99901 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46658 * 59.99730 * 9 7 2 27 27 H 1.08994 * 109.46986 * 300.00135 * 9 7 2 28 28 H 1.09003 * 109.46530 * 60.00123 * 10 9 7 29 29 H 1.08995 * 109.47095 * 300.00579 * 10 9 7 30 30 H 1.08995 * 109.48353 * 63.22239 * 12 11 10 31 31 H 1.08999 * 109.48478 * 303.15910 * 12 11 10 32 32 H 1.08996 * 109.49319 * 181.63517 * 13 12 11 33 33 H 1.09005 * 109.49198 * 61.56562 * 13 12 11 34 34 H 1.08998 * 110.75406 * 321.64123 * 17 15 14 35 35 H 1.09001 * 110.75646 * 85.00654 * 17 15 14 36 36 H 1.08996 * 110.49055 * 156.62516 * 18 17 15 37 37 H 1.09009 * 110.48309 * 279.12716 * 18 17 15 38 38 H 1.09004 * 110.03180 * 217.10473 * 19 18 17 39 39 H 1.09007 * 110.02948 * 95.68347 * 19 18 17 40 40 H 0.96705 * 113.99704 * 62.11731 * 22 20 19 41 41 H 1.09003 * 109.48915 * 60.64570 * 23 14 13 42 42 H 1.08997 * 109.49010 * 180.71043 * 23 14 13 43 43 H 1.09001 * 109.49339 * 296.77949 * 24 11 10 44 44 H 1.09004 * 109.48879 * 56.82671 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4173 -6.0661 -0.2370 13 6 1.6048 -7.3611 -0.3081 14 7 0.8623 -7.5400 0.9475 15 6 0.1278 -8.8121 0.9480 16 1 -0.5203 -8.8779 0.0739 17 6 -0.6996 -8.9632 2.2487 18 6 -0.8800 -10.4972 2.3629 19 6 0.4681 -11.0734 1.8830 20 6 1.1088 -10.0021 0.9835 21 1 1.2536 -10.3968 -0.0222 22 8 2.3618 -9.5872 1.5311 23 6 -0.0444 -6.4082 1.1856 24 6 0.7682 -5.1132 1.2566 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8718 -3.6044 0.8906 29 1 2.8719 -3.6044 -0.8894 30 1 3.1374 -6.1329 0.5785 31 1 2.9461 -5.9165 -1.1783 32 1 2.2782 -8.2053 -0.4557 33 1 0.9033 -7.3051 -1.1405 34 1 -0.1481 -8.5743 3.1046 35 1 -1.6652 -8.4667 2.1521 36 1 -1.0706 -10.7830 3.3973 37 1 -1.6924 -10.8348 1.7191 38 1 0.3018 -11.9881 1.3140 39 1 1.1126 -11.2772 2.7382 40 1 3.0189 -10.2943 1.5898 41 1 -0.7646 -6.3414 0.3701 42 1 -0.5733 -6.5578 2.1269 43 1 1.4696 -5.1693 2.0891 44 1 0.0950 -4.2688 1.4045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609572670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:04 Heat of formation + Delta-G solvation = -46.227575 kcal Electronic energy + Delta-G solvation = -21354.820497 eV Core-core repulsion = 18306.519423 eV Total energy + Delta-G solvation = -3048.301074 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.78511 -37.95650 -35.34008 -34.42839 -32.80312 -30.68100 -29.93175 -28.07507 -27.56867 -25.17231 -23.45574 -23.16932 -20.64728 -20.40437 -19.91899 -19.34258 -17.50989 -16.51073 -16.08601 -15.33352 -14.80433 -14.66810 -14.55911 -14.41333 -14.23982 -13.77628 -13.50635 -13.39068 -12.67158 -12.41083 -12.23548 -11.95435 -11.70007 -11.47142 -11.34597 -11.20657 -10.98826 -10.88408 -10.85774 -10.77938 -10.52390 -10.33074 -10.22362 -10.00097 -9.75365 -9.25793 -9.06311 -8.28578 -8.07907 -7.59321 -5.95317 -3.97261 3.35159 3.41030 3.44656 3.85009 4.19866 4.39903 4.40041 4.45055 4.65091 4.79262 5.07861 5.14572 5.19481 5.28507 5.40220 5.40673 5.47129 5.53953 5.60081 5.65889 5.70442 5.74827 5.76462 5.84272 5.93119 5.95549 6.12604 6.14902 6.29021 6.30323 6.43026 6.52644 6.61248 7.04602 7.20595 7.29203 7.60371 7.67516 7.68210 7.87491 7.96829 8.14422 8.49264 9.10060 9.66012 11.16129 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045402 B = 0.003468 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.563258 B = 8072.074550 C = 8438.596996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.541 5.541 12 C 0.059 3.941 13 C 0.066 3.934 14 N -0.513 5.513 15 C 0.085 3.915 16 H 0.052 0.948 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.156 4.156 20 C 0.108 3.892 21 H 0.049 0.951 22 O -0.536 6.536 23 C 0.056 3.944 24 C 0.059 3.941 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.059 0.941 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.081 0.919 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.365 0.635 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 -23.443 2.984 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.266 5.266 12 C -0.070 4.070 13 C -0.062 4.062 14 N -0.238 5.238 15 C -0.024 4.024 16 H 0.070 0.930 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.194 4.194 20 C 0.048 3.952 21 H 0.067 0.933 22 O -0.339 6.339 23 C -0.072 4.072 24 C -0.069 4.069 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.210 0.790 41 H 0.055 0.945 42 H 0.093 0.907 43 H 0.053 0.947 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.465 -22.734 3.012 22.937 hybrid contribution 0.690 0.344 -0.114 0.779 sum 0.225 -22.390 2.898 22.578 Atomic orbital electron populations 1.69975 1.06011 1.26494 1.50839 1.24994 0.94831 0.99148 0.95382 0.86599 0.79830 0.83520 0.78069 1.20683 1.21256 1.19923 1.21213 0.92994 0.91105 1.50624 0.92817 1.19089 0.93992 0.90136 0.97675 1.22302 0.96692 0.88401 0.98887 1.62262 1.27756 1.02544 1.34058 1.22070 0.94274 0.90222 1.00446 1.22087 0.96795 0.97644 0.89657 1.62109 1.26438 1.00420 1.34797 1.22529 0.92844 0.89533 0.97468 0.93020 1.22591 0.99365 0.95572 0.97964 1.22249 0.96733 0.95664 1.01285 1.22918 0.97988 0.98359 1.00126 1.22388 0.84894 0.93216 0.94653 0.93267 1.86810 1.22677 1.38621 1.85745 1.22242 0.94217 0.90255 1.00467 1.22132 0.97446 0.96566 0.90782 0.93058 0.95856 0.96506 0.96224 0.92242 0.94595 0.91074 0.90649 0.94979 0.89987 0.91461 0.91400 0.91661 0.91662 0.90721 0.79009 0.94452 0.90688 0.94744 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.03 0.76 4.91 -27.88 -0.14 0.63 16 10 C 0.06 1.43 4.90 -3.83 -0.02 1.41 16 11 N -0.54 -10.60 4.71 -234.48 -1.10 -11.71 16 12 C 0.06 0.97 5.61 -3.77 -0.02 0.95 16 13 C 0.07 0.96 5.29 -3.77 -0.02 0.94 16 14 N -0.51 -7.31 3.92 -224.51 -0.88 -8.20 16 15 C 0.09 0.98 2.52 -66.06 -0.17 0.81 16 16 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.12 -1.19 4.94 -24.74 -0.12 -1.31 16 18 C -0.12 -0.97 6.83 -25.08 -0.17 -1.14 16 19 C -0.16 -1.19 6.61 -25.62 -0.17 -1.36 16 20 C 0.11 1.04 3.39 -25.62 -0.09 0.95 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 O -0.54 -5.78 11.51 -35.23 -0.41 -6.19 16 23 C 0.06 0.86 5.33 -3.77 -0.02 0.84 16 24 C 0.06 1.09 5.41 -3.77 -0.02 1.07 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.02 0.47 6.49 -51.93 -0.34 0.13 16 28 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.06 1.30 8.03 -51.93 -0.42 0.89 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 32 H 0.08 1.00 6.70 -51.93 -0.35 0.65 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.07 0.65 7.91 -51.93 -0.41 0.24 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.56 7.96 -51.93 -0.41 0.15 16 40 H 0.36 2.37 9.11 45.56 0.41 2.78 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 1.03 6.68 -51.93 -0.35 0.69 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 1.77 6.34 -51.93 -0.33 1.44 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -32.04 335.54 -10.20 -42.24 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.22 Total: -1.59 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -1.36 Total: -10.04 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -1.25 Total: -46.48 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.41 Total: -6.19 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -32.04 -10.20 -42.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609572670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.986 kcal (2) G-P(sol) polarization free energy of solvation -32.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds