Wall clock time and date at job start Mon Mar 30 2020 01:20:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00203 * 2 1 4 4 H 1.48509 * 109.46916 * 269.99482 * 3 2 1 5 5 H 1.48494 * 109.47082 * 29.99278 * 3 2 1 6 6 H 1.48498 * 109.47240 * 149.99700 * 3 2 1 7 7 C 1.37880 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00009 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00219 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47106 * 179.97438 * 9 7 2 11 11 N 1.46894 * 109.46832 * 179.97438 * 10 9 7 12 12 C 1.46960 * 111.00056 * 170.00243 * 11 10 9 13 13 C 1.53041 * 109.36849 * 183.19083 * 12 11 10 14 14 N 1.46961 * 109.36409 * 301.59976 * 13 12 11 15 15 C 1.46900 * 110.99839 * 183.18664 * 14 13 12 16 16 H 1.09005 * 110.43798 * 305.05771 * 15 14 13 17 17 C 1.54890 * 110.59874 * 182.44458 * 15 14 13 18 18 C 1.54884 * 102.75150 * 203.32667 * 17 15 14 19 19 C 1.54264 * 104.19383 * 37.93688 * 18 17 15 20 20 C 1.53863 * 106.60067 * 336.39430 * 19 18 17 21 21 H 1.09005 * 110.03349 * 240.70980 * 20 19 18 22 22 O 1.42903 * 110.07516 * 119.30559 * 20 19 18 23 23 C 1.46957 * 110.87998 * 59.32035 * 14 13 12 24 24 C 1.46951 * 111.00358 * 293.80258 * 11 10 9 25 25 H 0.97002 * 119.99901 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46658 * 59.99730 * 9 7 2 27 27 H 1.08994 * 109.46986 * 300.00135 * 9 7 2 28 28 H 1.09003 * 109.46530 * 60.00123 * 10 9 7 29 29 H 1.08995 * 109.47095 * 300.00579 * 10 9 7 30 30 H 1.08995 * 109.48353 * 63.22239 * 12 11 10 31 31 H 1.08999 * 109.48478 * 303.15910 * 12 11 10 32 32 H 1.08996 * 109.49319 * 181.63517 * 13 12 11 33 33 H 1.09005 * 109.49198 * 61.56562 * 13 12 11 34 34 H 1.08998 * 110.75406 * 321.64123 * 17 15 14 35 35 H 1.09001 * 110.75646 * 85.00654 * 17 15 14 36 36 H 1.08996 * 110.49055 * 156.62516 * 18 17 15 37 37 H 1.09009 * 110.48309 * 279.12716 * 18 17 15 38 38 H 1.09004 * 110.03180 * 217.10473 * 19 18 17 39 39 H 1.09007 * 110.02948 * 95.68347 * 19 18 17 40 40 H 0.96705 * 113.99704 * 62.11731 * 22 20 19 41 41 H 1.09003 * 109.48915 * 60.64570 * 23 14 13 42 42 H 1.08997 * 109.49010 * 180.71043 * 23 14 13 43 43 H 1.09001 * 109.49339 * 296.77949 * 24 11 10 44 44 H 1.09004 * 109.48879 * 56.82671 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4002 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6622 0.0005 11 7 1.5106 -4.9343 0.0012 12 6 2.4173 -6.0661 -0.2370 13 6 1.6048 -7.3611 -0.3081 14 7 0.8623 -7.5400 0.9475 15 6 0.1278 -8.8121 0.9480 16 1 -0.5203 -8.8779 0.0739 17 6 -0.6996 -8.9632 2.2487 18 6 -0.8800 -10.4972 2.3629 19 6 0.4681 -11.0734 1.8830 20 6 1.1088 -10.0021 0.9835 21 1 1.2536 -10.3968 -0.0222 22 8 2.3618 -9.5872 1.5311 23 6 -0.0444 -6.4082 1.1856 24 6 0.7682 -5.1132 1.2566 25 1 -0.4850 0.8401 -0.0004 26 1 0.6246 -2.5571 -0.8897 27 1 0.6240 -2.5567 0.8902 28 1 2.8718 -3.6044 0.8906 29 1 2.8719 -3.6044 -0.8894 30 1 3.1374 -6.1329 0.5785 31 1 2.9461 -5.9165 -1.1783 32 1 2.2782 -8.2053 -0.4557 33 1 0.9033 -7.3051 -1.1405 34 1 -0.1481 -8.5743 3.1046 35 1 -1.6652 -8.4667 2.1521 36 1 -1.0706 -10.7830 3.3973 37 1 -1.6924 -10.8348 1.7191 38 1 0.3018 -11.9881 1.3140 39 1 1.1126 -11.2772 2.7382 40 1 3.0189 -10.2943 1.5898 41 1 -0.7646 -6.3414 0.3701 42 1 -0.5733 -6.5578 2.1269 43 1 1.4696 -5.1693 2.0891 44 1 0.0950 -4.2688 1.4045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609572670.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:03 Heat of formation + Delta-G solvation = -69.948276 kcal Electronic energy + Delta-G solvation = -21355.849104 eV Core-core repulsion = 18306.519423 eV Total energy + Delta-G solvation = -3049.329681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.81684 -39.14104 -36.53095 -35.56112 -34.73434 -32.07971 -31.65478 -29.13093 -28.55682 -26.73110 -25.10902 -24.52619 -22.17793 -21.36782 -20.99663 -20.61948 -18.65584 -18.26621 -17.21424 -16.56737 -16.30860 -16.05846 -15.76627 -15.67665 -15.52853 -15.18896 -14.76436 -14.53141 -14.19449 -13.90219 -13.47821 -13.26891 -13.14784 -12.85756 -12.68595 -12.50246 -12.35795 -12.28059 -12.17942 -11.99404 -11.82854 -11.61645 -11.48886 -11.34506 -11.20507 -11.06919 -10.69693 -10.53984 -9.29187 -9.12790 -8.20213 -6.31732 1.39833 1.41821 1.52903 2.40219 2.84009 3.06953 3.12913 3.43992 3.65858 3.71429 3.95419 4.11708 4.14465 4.19818 4.33675 4.38262 4.43425 4.43763 4.53333 4.55698 4.60894 4.70557 4.73230 4.80924 4.87528 4.92667 5.00229 5.02426 5.06312 5.09931 5.13239 5.18081 5.23803 5.44078 5.44719 5.64789 5.76787 6.05091 6.07646 6.22519 6.31238 6.34687 6.84791 7.10734 7.37154 8.92027 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.045402 B = 0.003468 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.563258 B = 8072.074550 C = 8438.596996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.039 3.961 10 C 0.080 3.920 11 N -0.551 5.551 12 C 0.060 3.940 13 C 0.074 3.926 14 N -0.520 5.520 15 C 0.076 3.924 16 H 0.054 0.946 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.149 4.149 20 C 0.109 3.891 21 H 0.061 0.939 22 O -0.560 6.560 23 C 0.067 3.933 24 C 0.062 3.938 25 H 0.264 0.736 26 H -0.009 1.009 27 H -0.006 1.006 28 H 0.016 0.984 29 H 0.064 0.936 30 H 0.030 0.970 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.383 0.617 41 H 0.030 0.970 42 H 0.089 0.911 43 H 0.027 0.973 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.856 -24.908 2.941 25.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.047 4.047 11 N -0.276 5.276 12 C -0.068 4.068 13 C -0.054 4.054 14 N -0.245 5.245 15 C -0.032 4.032 16 H 0.072 0.928 17 C -0.155 4.155 18 C -0.155 4.155 19 C -0.187 4.187 20 C 0.050 3.950 21 H 0.079 0.921 22 O -0.366 6.366 23 C -0.061 4.061 24 C -0.066 4.066 25 H 0.073 0.927 26 H 0.010 0.990 27 H 0.012 0.988 28 H 0.034 0.966 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.113 0.887 33 H 0.046 0.954 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.231 0.769 41 H 0.048 0.952 42 H 0.108 0.892 43 H 0.045 0.955 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.414 -24.240 2.970 24.425 hybrid contribution 0.395 0.758 -0.092 0.860 sum 0.810 -23.482 2.878 23.672 Atomic orbital electron populations 1.70113 1.07825 1.27794 1.51383 1.25980 0.95787 1.03359 0.94568 0.85406 0.78597 0.78219 0.78557 1.19642 1.20611 1.18781 1.21622 0.93504 0.92285 1.51006 0.92251 1.18899 0.94134 0.91881 0.94968 1.21959 0.95409 0.88466 0.98886 1.62207 1.28273 1.02452 1.34662 1.22155 0.94049 0.90002 1.00643 1.22022 0.96781 0.96897 0.89679 1.62115 1.26620 1.01093 1.34635 1.22729 0.93638 0.88712 0.98157 0.92823 1.22569 0.98857 0.97493 0.96594 1.22255 0.97447 0.93675 1.02157 1.22869 0.97418 0.98348 1.00038 1.22414 0.84305 0.92547 0.95754 0.92101 1.86747 1.23582 1.40343 1.85941 1.22087 0.93671 0.89365 1.01001 1.22067 0.96999 0.97482 0.90095 0.92727 0.99012 0.98793 0.96577 0.91707 0.95155 0.90044 0.88703 0.95419 0.91698 0.91418 0.90627 0.90543 0.89734 0.90533 0.76920 0.95213 0.89240 0.95473 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 45.27 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 7 C -0.55 -32.26 9.11 25.60 0.23 -32.03 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.04 2.16 4.91 29.85 0.15 2.31 16 10 C 0.08 3.67 4.90 86.31 0.42 4.09 16 11 N -0.55 -22.00 4.71 -895.75 -4.22 -26.22 16 12 C 0.06 1.94 5.61 86.31 0.48 2.43 16 13 C 0.07 2.06 5.29 86.31 0.46 2.52 16 14 N -0.52 -14.36 3.92 -864.20 -3.39 -17.75 16 15 C 0.08 1.62 2.52 45.99 0.12 1.74 16 16 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 17 C -0.12 -2.22 4.94 31.88 0.16 -2.07 16 18 C -0.12 -1.58 6.83 31.67 0.22 -1.36 16 19 C -0.15 -1.83 6.61 31.31 0.21 -1.62 16 20 C 0.11 1.82 3.39 31.31 0.11 1.93 16 21 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 22 O -0.56 -10.87 11.51 -148.98 -1.71 -12.59 16 23 C 0.07 2.07 5.33 86.31 0.46 2.53 16 24 C 0.06 2.36 5.41 86.31 0.47 2.83 16 25 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 26 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 27 H -0.01 -0.37 6.49 -2.39 -0.02 -0.39 16 28 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 29 H 0.06 2.86 8.03 -2.39 -0.02 2.84 16 30 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 2.47 8.07 -2.39 -0.02 2.45 16 32 H 0.09 2.29 6.70 -2.39 -0.02 2.28 16 33 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.06 1.46 8.10 -2.39 -0.02 1.44 16 35 H 0.07 1.25 7.91 -2.39 -0.02 1.23 16 36 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 0.87 8.14 -2.38 -0.02 0.86 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.94 7.96 -2.38 -0.02 0.92 16 40 H 0.38 4.06 9.11 -74.05 -0.67 3.39 16 41 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.09 2.47 6.68 -2.39 -0.02 2.46 16 43 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.06 2.65 6.34 -2.39 -0.02 2.63 16 Total: -1.00 -69.50 335.54 -2.80 -72.30 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.28 Total: 10.96 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: 3.93 Total: -16.19 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -7.33 Total: -101.79 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.71 Total: -12.59 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -69.50 -2.80 -72.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609572670.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.353 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds