Wall clock time and date at job start Mon Mar 30 2020 01:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00423 * 2 1 4 4 H 1.48506 * 109.47077 * 239.99867 * 3 2 1 5 5 H 1.48501 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47251 * 120.00107 * 3 2 1 7 7 C 1.37884 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99857 * 179.72632 * 7 2 1 9 9 C 1.50700 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47153 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46879 * 179.97438 * 10 9 7 12 12 C 1.46948 * 111.00398 * 293.79947 * 11 10 9 13 13 C 1.53051 * 109.36681 * 176.81367 * 12 11 10 14 14 N 1.46956 * 109.36341 * 58.40196 * 13 12 11 15 15 C 1.46902 * 110.99643 * 176.81136 * 14 13 12 16 16 H 1.09002 * 110.43259 * 63.37234 * 15 14 13 17 17 C 1.54887 * 110.48345 * 186.05195 * 15 14 13 18 18 C 1.54887 * 102.75088 * 156.61990 * 17 15 14 19 19 C 1.54267 * 104.19557 * 322.05926 * 18 17 15 20 20 C 1.53880 * 106.59728 * 23.60784 * 19 18 17 21 21 H 1.09001 * 110.03087 * 119.28408 * 20 19 18 22 22 O 1.42894 * 110.07021 * 240.69312 * 20 19 18 23 23 C 1.46956 * 110.87809 * 300.67854 * 14 13 12 24 24 C 1.46956 * 110.99641 * 169.99707 * 11 10 9 25 25 H 0.97001 * 119.99657 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46870 * 300.00541 * 9 7 2 27 27 H 1.09000 * 109.46853 * 59.99758 * 9 7 2 28 28 H 1.08999 * 109.47002 * 300.00062 * 10 9 7 29 29 H 1.08999 * 109.47113 * 59.99937 * 10 9 7 30 30 H 1.09006 * 109.48723 * 296.78387 * 12 11 10 31 31 H 1.08997 * 109.49125 * 56.84188 * 12 11 10 32 32 H 1.08994 * 109.48558 * 298.42975 * 13 12 11 33 33 H 1.09007 * 109.50526 * 178.37622 * 13 12 11 34 34 H 1.08996 * 110.75906 * 274.93858 * 17 15 14 35 35 H 1.09005 * 110.75777 * 38.30878 * 17 15 14 36 36 H 1.08992 * 110.49348 * 203.37656 * 18 17 15 37 37 H 1.08998 * 110.48411 * 80.73168 * 18 17 15 38 38 H 1.08993 * 110.03467 * 264.32569 * 19 18 17 39 39 H 1.09002 * 110.07385 * 142.91158 * 19 18 17 40 40 H 0.96703 * 114.00248 * 297.18910 * 22 20 19 41 41 H 1.08998 * 109.48681 * 299.35202 * 23 14 13 42 42 H 1.09007 * 109.50285 * 179.30300 * 23 14 13 43 43 H 1.09001 * 109.49437 * 303.15867 * 24 11 10 44 44 H 1.09002 * 109.49007 * 63.22701 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0050 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5103 -4.9343 0.0001 12 6 0.7680 -5.1132 1.2556 13 6 -0.0447 -6.4082 1.1846 14 7 0.8619 -7.5400 0.9464 15 6 0.1273 -8.8121 0.9470 16 1 -0.5910 -8.8371 0.1275 17 6 1.1097 -10.0054 0.8471 18 6 0.2937 -11.1720 1.4572 19 6 -0.4814 -10.5228 2.6223 20 6 -0.5872 -9.0223 2.2979 21 1 -1.6343 -8.7310 2.2158 22 8 0.0559 -8.2538 3.3166 23 6 1.6043 -7.3611 -0.3092 24 6 2.4170 -6.0661 -0.2382 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5570 0.8897 27 1 0.6238 -2.5567 -0.8903 28 1 2.8716 -3.6045 -0.8905 29 1 2.8717 -3.6045 0.8894 30 1 1.4695 -5.1693 2.0880 31 1 0.0946 -4.2690 1.4034 32 1 -0.7649 -6.3412 0.3692 33 1 -0.5738 -6.5580 2.1258 34 1 1.3615 -10.2125 -0.1929 35 1 2.0091 -9.8154 1.4330 36 1 0.9600 -11.9503 1.8290 37 1 -0.3975 -11.5804 0.7199 38 1 0.0609 -10.6654 3.5569 39 1 -1.4773 -10.9594 2.6985 40 1 -0.3475 -8.3436 4.1909 41 1 0.9028 -7.3051 -1.1416 42 1 2.2777 -8.2054 -0.4573 43 1 2.9458 -5.9166 -1.1795 44 1 3.1372 -6.1331 0.5772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609572671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:07 Heat of formation + Delta-G solvation = -45.951931 kcal Electronic energy + Delta-G solvation = -21387.490324 eV Core-core repulsion = 18339.201203 eV Total energy + Delta-G solvation = -3048.289121 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.79786 -37.93544 -35.31092 -34.45255 -32.80297 -30.64309 -29.94328 -28.00160 -27.62891 -25.16040 -23.46594 -23.11642 -20.73388 -20.32191 -19.93612 -19.32902 -17.51045 -16.49994 -16.09196 -15.28850 -14.84076 -14.70858 -14.53852 -14.43637 -14.16551 -13.75697 -13.54489 -13.35220 -12.73061 -12.38512 -12.17973 -11.96638 -11.70039 -11.45754 -11.38776 -11.18793 -10.99399 -10.88207 -10.83158 -10.77494 -10.53634 -10.32863 -10.18288 -9.95913 -9.73690 -9.25609 -9.07105 -8.27909 -8.08031 -7.58696 -5.94827 -3.96844 3.36811 3.40729 3.43452 3.85713 4.20927 4.39564 4.40815 4.45418 4.65896 4.79526 5.09348 5.15147 5.19725 5.28193 5.39942 5.40859 5.47040 5.55335 5.60094 5.63730 5.71680 5.74216 5.78579 5.84716 5.95099 5.99688 6.10686 6.14646 6.26756 6.33483 6.47386 6.55504 6.62403 7.05218 7.21363 7.30872 7.61153 7.68041 7.70035 7.87837 7.97601 8.15006 8.49655 9.10289 9.66285 11.16607 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043938 B = 0.003516 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.111458 B = 7962.673597 C = 8309.235949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.064 3.936 11 N -0.541 5.541 12 C 0.061 3.939 13 C 0.063 3.937 14 N -0.514 5.514 15 C 0.085 3.915 16 H 0.052 0.948 17 C -0.114 4.114 18 C -0.121 4.121 19 C -0.155 4.155 20 C 0.106 3.894 21 H 0.052 0.948 22 O -0.536 6.536 23 C 0.057 3.943 24 C 0.058 3.942 25 H 0.260 0.740 26 H 0.017 0.983 27 H 0.023 0.977 28 H 0.059 0.941 29 H 0.019 0.981 30 H 0.035 0.965 31 H 0.086 0.914 32 H 0.031 0.969 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.366 0.634 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.361 -22.689 4.063 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.063 4.063 11 N -0.267 5.267 12 C -0.068 4.068 13 C -0.065 4.065 14 N -0.238 5.238 15 C -0.024 4.024 16 H 0.070 0.930 17 C -0.152 4.152 18 C -0.159 4.159 19 C -0.194 4.194 20 C 0.047 3.953 21 H 0.069 0.931 22 O -0.340 6.340 23 C -0.071 4.071 24 C -0.071 4.071 25 H 0.070 0.930 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.104 0.896 32 H 0.049 0.951 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.212 0.788 41 H 0.054 0.946 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.129 -22.382 3.555 22.690 hybrid contribution 0.020 0.747 0.411 0.853 sum -1.109 -21.634 3.967 22.023 Atomic orbital electron populations 1.69966 1.06014 1.26604 1.50744 1.24993 0.94831 0.99134 0.95371 0.86657 0.79568 0.83173 0.78578 1.20267 1.21309 1.20291 1.21179 0.92955 0.91124 1.50763 0.92871 1.19079 0.93985 0.90106 0.97673 1.22302 0.96700 0.88435 0.98850 1.62267 1.27634 1.02445 1.34307 1.22113 0.97433 0.96641 0.90575 1.22208 0.93915 0.89755 1.00641 1.62128 1.27269 1.00828 1.33624 1.22532 0.94684 0.90715 0.94442 0.93050 1.22552 0.98785 0.93147 1.00742 1.22250 0.98679 0.97682 0.97316 1.22911 1.00602 0.96095 0.99747 1.22394 0.94730 0.89548 0.88663 0.93052 1.86804 1.58535 1.69227 1.19401 1.22183 0.97062 0.97471 0.90390 1.22082 0.94239 0.90349 1.00438 0.93001 0.96505 0.95870 0.92274 0.96231 0.94661 0.89551 0.95093 0.89722 0.91714 0.90049 0.91438 0.91695 0.90708 0.91623 0.78782 0.94561 0.91000 0.90962 0.94760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.37 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.78 4.91 -27.88 -0.14 0.64 16 10 C 0.06 1.43 4.90 -3.82 -0.02 1.41 16 11 N -0.54 -10.64 4.71 -234.47 -1.10 -11.75 16 12 C 0.06 1.13 5.41 -3.77 -0.02 1.11 16 13 C 0.06 0.99 5.15 -3.77 -0.02 0.97 16 14 N -0.51 -7.33 4.04 -224.50 -0.91 -8.24 16 15 C 0.09 0.98 2.52 -66.06 -0.17 0.81 16 16 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 17 C -0.11 -1.11 5.33 -24.74 -0.13 -1.25 16 18 C -0.12 -0.94 6.83 -25.07 -0.17 -1.11 16 19 C -0.16 -1.20 6.61 -25.61 -0.17 -1.37 16 20 C 0.11 1.06 3.32 -25.61 -0.08 0.97 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 O -0.54 -6.00 10.79 -35.23 -0.38 -6.38 16 23 C 0.06 0.81 5.43 -3.77 -0.02 0.79 16 24 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16 25 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 26 H 0.02 0.47 6.49 -51.93 -0.34 0.14 16 27 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.30 8.03 -51.93 -0.42 0.88 16 29 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.77 6.34 -51.93 -0.33 1.44 16 32 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 1.25 5.92 -51.92 -0.31 0.95 16 34 H 0.06 0.58 7.88 -51.93 -0.41 0.17 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.57 7.96 -51.93 -0.41 0.16 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.37 2.57 9.11 45.56 0.42 2.99 16 41 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.88 6.93 -51.93 -0.36 0.52 16 43 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 44 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -32.07 334.73 -10.19 -42.26 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -7.19 Total: -1.36 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.37 Total: -9.98 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -1.28 Total: -46.62 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.38 Total: -6.38 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.07 -10.19 -42.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609572671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.693 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds