Wall clock time and date at job start Mon Mar 30 2020 01:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86795 * 120.00423 * 2 1 4 4 H 1.48506 * 109.47077 * 239.99867 * 3 2 1 5 5 H 1.48501 * 109.47299 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47251 * 120.00107 * 3 2 1 7 7 C 1.37884 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99857 * 179.72632 * 7 2 1 9 9 C 1.50700 * 120.00141 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47153 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.46879 * 179.97438 * 10 9 7 12 12 C 1.46948 * 111.00398 * 293.79947 * 11 10 9 13 13 C 1.53051 * 109.36681 * 176.81367 * 12 11 10 14 14 N 1.46956 * 109.36341 * 58.40196 * 13 12 11 15 15 C 1.46902 * 110.99643 * 176.81136 * 14 13 12 16 16 H 1.09002 * 110.43259 * 63.37234 * 15 14 13 17 17 C 1.54887 * 110.48345 * 186.05195 * 15 14 13 18 18 C 1.54887 * 102.75088 * 156.61990 * 17 15 14 19 19 C 1.54267 * 104.19557 * 322.05926 * 18 17 15 20 20 C 1.53880 * 106.59728 * 23.60784 * 19 18 17 21 21 H 1.09001 * 110.03087 * 119.28408 * 20 19 18 22 22 O 1.42894 * 110.07021 * 240.69312 * 20 19 18 23 23 C 1.46956 * 110.87809 * 300.67854 * 14 13 12 24 24 C 1.46956 * 110.99641 * 169.99707 * 11 10 9 25 25 H 0.97001 * 119.99657 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.46870 * 300.00541 * 9 7 2 27 27 H 1.09000 * 109.46853 * 59.99758 * 9 7 2 28 28 H 1.08999 * 109.47002 * 300.00062 * 10 9 7 29 29 H 1.08999 * 109.47113 * 59.99937 * 10 9 7 30 30 H 1.09006 * 109.48723 * 296.78387 * 12 11 10 31 31 H 1.08997 * 109.49125 * 56.84188 * 12 11 10 32 32 H 1.08994 * 109.48558 * 298.42975 * 13 12 11 33 33 H 1.09007 * 109.50526 * 178.37622 * 13 12 11 34 34 H 1.08996 * 110.75906 * 274.93858 * 17 15 14 35 35 H 1.09005 * 110.75777 * 38.30878 * 17 15 14 36 36 H 1.08992 * 110.49348 * 203.37656 * 18 17 15 37 37 H 1.08998 * 110.48411 * 80.73168 * 18 17 15 38 38 H 1.08993 * 110.03467 * 264.32569 * 19 18 17 39 39 H 1.09002 * 110.07385 * 142.91158 * 19 18 17 40 40 H 0.96703 * 114.00248 * 297.18910 * 22 20 19 41 41 H 1.08998 * 109.48681 * 299.35202 * 23 14 13 42 42 H 1.09007 * 109.50285 * 179.30300 * 23 14 13 43 43 H 1.09001 * 109.49437 * 303.15867 * 24 11 10 44 44 H 1.09002 * 109.49007 * 63.22701 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0050 9 6 1.2508 -2.4992 -0.0005 10 6 2.2450 -3.6622 -0.0005 11 7 1.5103 -4.9343 0.0001 12 6 0.7680 -5.1132 1.2556 13 6 -0.0447 -6.4082 1.1846 14 7 0.8619 -7.5400 0.9464 15 6 0.1273 -8.8121 0.9470 16 1 -0.5910 -8.8371 0.1275 17 6 1.1097 -10.0054 0.8471 18 6 0.2937 -11.1720 1.4572 19 6 -0.4814 -10.5228 2.6223 20 6 -0.5872 -9.0223 2.2979 21 1 -1.6343 -8.7310 2.2158 22 8 0.0559 -8.2538 3.3166 23 6 1.6043 -7.3611 -0.3092 24 6 2.4170 -6.0661 -0.2382 25 1 -0.4850 0.8401 -0.0004 26 1 0.6245 -2.5570 0.8897 27 1 0.6238 -2.5567 -0.8903 28 1 2.8716 -3.6045 -0.8905 29 1 2.8717 -3.6045 0.8894 30 1 1.4695 -5.1693 2.0880 31 1 0.0946 -4.2690 1.4034 32 1 -0.7649 -6.3412 0.3692 33 1 -0.5738 -6.5580 2.1258 34 1 1.3615 -10.2125 -0.1929 35 1 2.0091 -9.8154 1.4330 36 1 0.9600 -11.9503 1.8290 37 1 -0.3975 -11.5804 0.7199 38 1 0.0609 -10.6654 3.5569 39 1 -1.4773 -10.9594 2.6985 40 1 -0.3475 -8.3436 4.1909 41 1 0.9028 -7.3051 -1.1416 42 1 2.2777 -8.2054 -0.4573 43 1 2.9458 -5.9166 -1.1795 44 1 3.1372 -6.1331 0.5772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609572671.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:06 Heat of formation + Delta-G solvation = -69.733025 kcal Electronic energy + Delta-G solvation = -21388.521550 eV Core-core repulsion = 18339.201203 eV Total energy + Delta-G solvation = -3049.320347 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.83053 -39.13838 -36.51289 -35.58692 -34.75039 -32.06760 -31.64143 -29.08827 -28.59353 -26.72752 -25.09689 -24.50344 -22.20450 -21.32050 -21.03636 -20.61148 -18.65865 -18.29021 -17.21655 -16.57075 -16.24447 -16.12019 -15.78475 -15.75970 -15.40649 -15.17653 -14.80034 -14.51693 -14.20952 -13.91710 -13.43639 -13.31599 -13.06210 -12.85238 -12.79779 -12.49811 -12.32441 -12.27044 -12.16536 -11.94221 -11.80236 -11.64044 -11.51918 -11.31824 -11.14153 -11.10989 -10.71689 -10.53626 -9.29282 -9.12964 -8.20092 -6.31825 1.39721 1.43550 1.51414 2.40301 2.84476 3.07734 3.12896 3.44111 3.65177 3.70705 3.96707 4.11350 4.14799 4.21837 4.34341 4.37995 4.43078 4.44487 4.54478 4.58102 4.60190 4.72109 4.74687 4.81397 4.87789 4.93480 5.01360 5.02901 5.06850 5.11850 5.14501 5.18967 5.26244 5.43904 5.46256 5.64634 5.76720 6.04462 6.10547 6.21425 6.32546 6.34534 6.84586 7.06184 7.37020 8.92015 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.043938 B = 0.003516 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.111458 B = 7962.673597 C = 8309.235949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.039 3.961 10 C 0.080 3.920 11 N -0.552 5.552 12 C 0.065 3.935 13 C 0.076 3.924 14 N -0.520 5.520 15 C 0.076 3.924 16 H 0.053 0.947 17 C -0.111 4.111 18 C -0.117 4.117 19 C -0.148 4.148 20 C 0.104 3.896 21 H 0.055 0.945 22 O -0.561 6.561 23 C 0.063 3.937 24 C 0.057 3.943 25 H 0.264 0.736 26 H -0.007 1.007 27 H -0.009 1.009 28 H 0.065 0.935 29 H 0.016 0.984 30 H 0.026 0.974 31 H 0.058 0.942 32 H 0.021 0.979 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.383 0.617 41 H 0.032 0.968 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 -24.085 4.115 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.002 3.998 10 C -0.047 4.047 11 N -0.277 5.277 12 C -0.063 4.063 13 C -0.052 4.052 14 N -0.245 5.245 15 C -0.032 4.032 16 H 0.070 0.930 17 C -0.148 4.148 18 C -0.155 4.155 19 C -0.186 4.186 20 C 0.044 3.956 21 H 0.073 0.927 22 O -0.367 6.367 23 C -0.065 4.065 24 C -0.071 4.071 25 H 0.073 0.927 26 H 0.011 0.989 27 H 0.009 0.991 28 H 0.084 0.916 29 H 0.034 0.966 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.040 0.960 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.231 0.769 41 H 0.050 0.950 42 H 0.116 0.884 43 H 0.102 0.898 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -0.318 -23.812 3.617 24.087 hybrid contribution -0.267 1.143 0.409 1.243 sum -0.585 -22.669 4.026 23.031 Atomic orbital electron populations 1.70109 1.07853 1.27873 1.51301 1.25988 0.95788 1.03383 0.94534 0.85456 0.78241 0.77851 0.79215 1.19066 1.20675 1.19172 1.21600 0.93520 0.92285 1.51147 0.92203 1.18890 0.94135 0.91922 0.94899 1.21959 0.95398 0.88477 0.98891 1.62210 1.28258 1.02462 1.34745 1.22022 0.96921 0.97430 0.89940 1.22013 0.93372 0.89018 1.00825 1.62125 1.27367 1.01389 1.33645 1.22735 0.95213 0.89673 0.95619 0.92963 1.22516 0.97989 0.93089 1.01242 1.22259 0.98751 0.97075 0.97423 1.22853 1.01633 0.94346 0.99798 1.22466 0.94466 0.90948 0.87709 0.92688 1.86738 1.59380 1.69861 1.20718 1.22166 0.97146 0.96971 0.90257 1.22195 0.94044 0.90052 1.00804 0.92715 0.98911 0.99056 0.91648 0.96577 0.95559 0.92367 0.96041 0.88773 0.90851 0.91519 0.90410 0.90549 0.90525 0.89985 0.76874 0.95018 0.88394 0.89782 0.95087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.28 13.29 21.45 0.28 -58.00 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.55 -32.42 9.11 25.60 0.23 -32.18 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 9 C 0.04 2.19 4.91 29.85 0.15 2.34 16 10 C 0.08 3.68 4.90 86.30 0.42 4.10 16 11 N -0.55 -22.11 4.71 -895.73 -4.22 -26.33 16 12 C 0.07 2.53 5.41 86.31 0.47 3.00 16 13 C 0.08 2.41 5.15 86.31 0.44 2.85 16 14 N -0.52 -14.38 4.04 -864.20 -3.49 -17.87 16 15 C 0.08 1.62 2.52 45.99 0.12 1.74 16 16 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 17 C -0.11 -1.90 5.33 31.88 0.17 -1.73 16 18 C -0.12 -1.48 6.83 31.67 0.22 -1.26 16 19 C -0.15 -1.91 6.61 31.32 0.21 -1.70 16 20 C 0.10 1.88 3.32 31.32 0.10 1.98 16 21 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 22 O -0.56 -11.88 10.79 -148.98 -1.61 -13.49 16 23 C 0.06 1.69 5.43 86.31 0.47 2.16 16 24 C 0.06 1.83 5.61 86.31 0.48 2.32 16 25 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 26 H -0.01 -0.45 6.49 -2.39 -0.02 -0.46 16 27 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 28 H 0.07 2.89 8.03 -2.39 -0.02 2.87 16 29 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 30 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.06 2.55 6.34 -2.39 -0.02 2.53 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.09 2.80 5.92 -2.38 -0.01 2.78 16 34 H 0.07 1.12 7.88 -2.39 -0.02 1.10 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 0.98 7.96 -2.39 -0.02 0.96 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.38 4.91 9.11 -74.06 -0.67 4.24 16 41 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.10 2.16 6.93 -2.38 -0.02 2.14 16 43 H 0.08 2.49 8.07 -2.39 -0.02 2.47 16 44 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -69.78 334.73 -2.78 -72.56 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.28 Total: 11.68 kcal Atomic # 6 Polarization: -19.81 SS G_CDS: 3.94 Total: -15.87 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -7.43 Total: -102.20 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.61 Total: -13.49 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -69.78 -2.78 -72.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609572671.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.832 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds