Wall clock time and date at job start Mon Mar 30 2020 01:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00122 * 2 1 4 4 H 1.48501 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46974 * 299.99756 * 3 2 1 6 6 H 1.48500 * 109.47508 * 59.99979 * 3 2 1 7 7 C 1.37878 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.46728 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46550 * 179.97438 * 10 9 7 12 12 C 1.46958 * 110.99667 * 189.99811 * 11 10 9 13 13 C 1.53048 * 109.36381 * 183.18871 * 12 11 10 14 14 N 1.46958 * 109.36915 * 301.60024 * 13 12 11 15 15 C 1.46893 * 111.00337 * 183.19049 * 14 13 12 16 16 H 1.09002 * 110.05867 * 301.41771 * 15 14 13 17 17 C 1.54271 * 110.03470 * 62.83287 * 15 14 13 18 18 C 1.54884 * 104.19770 * 142.89616 * 17 15 14 19 19 C 1.54894 * 102.74702 * 322.05883 * 18 17 15 20 20 C 1.53873 * 110.03337 * 180.02562 * 15 14 13 21 21 H 1.09002 * 110.03070 * 359.97438 * 20 15 14 22 22 O 1.42901 * 110.03411 * 121.38002 * 20 15 14 23 23 C 1.46957 * 110.87585 * 59.31775 * 14 13 12 24 24 C 1.46949 * 111.00501 * 313.79874 * 11 10 9 25 25 H 0.96998 * 119.99843 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47671 * 59.99712 * 9 7 2 27 27 H 1.08999 * 109.47184 * 299.99174 * 9 7 2 28 28 H 1.08994 * 109.46725 * 60.00256 * 10 9 7 29 29 H 1.08999 * 109.47020 * 299.99772 * 10 9 7 30 30 H 1.09006 * 109.48502 * 63.22569 * 12 11 10 31 31 H 1.08996 * 109.51147 * 303.16890 * 12 11 10 32 32 H 1.09006 * 109.48745 * 181.63412 * 13 12 11 33 33 H 1.08999 * 109.48833 * 61.57148 * 13 12 11 34 34 H 1.09002 * 110.48328 * 261.57464 * 17 15 14 35 35 H 1.08994 * 110.48367 * 24.21427 * 17 15 14 36 36 H 1.08996 * 110.75718 * 80.36910 * 18 17 15 37 37 H 1.08991 * 110.75873 * 203.55863 * 18 17 15 38 38 H 1.08998 * 110.48844 * 279.26280 * 19 18 17 39 39 H 1.09001 * 110.48508 * 156.62189 * 19 18 17 40 40 H 0.96692 * 114.00025 * 179.30857 * 22 20 15 41 41 H 1.09004 * 109.48703 * 60.65439 * 23 14 13 42 42 H 1.09003 * 109.48666 * 180.71066 * 23 14 13 43 43 H 1.08999 * 109.49076 * 296.78330 * 24 11 10 44 44 H 1.09000 * 109.48879 * 56.82334 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5106 -4.9342 0.0012 12 6 2.4175 -6.0659 0.2394 13 6 1.6290 -7.3748 0.1535 14 7 0.5436 -7.3559 1.1441 15 6 -0.1909 -8.6280 1.1447 16 1 -0.6044 -8.8214 0.1549 17 6 0.7477 -9.7799 1.5596 18 6 -0.1485 -10.7115 2.4128 19 6 -1.0292 -9.7105 3.2012 20 6 -1.3210 -8.5836 2.1880 21 1 -1.3242 -7.6183 2.6942 22 8 -2.5818 -8.8081 1.5539 23 6 -0.3632 -6.2242 0.9058 24 6 0.4253 -4.9153 0.9917 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 2.8618 -5.9733 1.2305 31 1 3.2053 -6.0658 -0.5138 32 1 2.2938 -8.2139 0.3586 33 1 1.2073 -7.4804 -0.8461 34 1 1.1170 -10.3068 0.6797 35 1 1.5782 -9.3999 2.1543 36 1 -0.7627 -11.3471 1.7750 37 1 0.4559 -11.3151 3.0899 38 1 -0.4856 -9.3192 4.0611 39 1 -1.9566 -10.1867 3.5194 40 1 -3.3341 -8.8026 2.1613 41 1 -0.8076 -6.3168 -0.0852 42 1 -1.1508 -6.2245 1.6593 43 1 0.8470 -4.8097 1.9912 44 1 -0.2393 -4.0759 0.7869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609572672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:09 Heat of formation + Delta-G solvation = -47.054338 kcal Electronic energy + Delta-G solvation = -21322.269760 eV Core-core repulsion = 18273.932835 eV Total energy + Delta-G solvation = -3048.336925 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.90089 -38.05640 -35.59564 -34.37411 -32.82467 -30.86160 -29.93030 -27.98286 -27.63588 -25.21203 -23.61141 -23.19357 -20.96332 -20.49116 -19.79939 -19.19111 -17.50773 -16.56534 -16.13129 -15.77249 -15.01051 -14.59902 -14.49669 -14.47274 -14.08280 -13.81286 -13.77141 -13.17788 -12.75906 -12.38598 -12.25061 -12.13621 -11.80228 -11.55750 -11.34963 -11.22665 -11.01670 -10.95557 -10.90376 -10.78509 -10.56413 -10.41533 -10.28811 -9.96861 -9.87619 -9.28614 -9.06407 -8.34172 -8.26224 -7.65556 -5.99736 -4.01787 3.31620 3.38998 3.43202 3.69392 4.19295 4.33001 4.41102 4.57232 4.61047 4.79641 5.10445 5.14673 5.28323 5.34553 5.36266 5.37722 5.44435 5.55672 5.58553 5.62388 5.67177 5.74264 5.78601 5.80811 5.87207 5.90866 6.04419 6.13216 6.19954 6.27024 6.41516 6.52225 6.54418 6.94858 7.12515 7.14959 7.51516 7.54675 7.63620 7.80643 7.87252 8.06052 8.44020 9.05048 9.61914 11.11724 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037491 B = 0.003581 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.663219 B = 7816.288399 C = 8294.063735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C 0.063 3.937 11 N -0.542 5.542 12 C 0.057 3.943 13 C 0.061 3.939 14 N -0.533 5.533 15 C 0.087 3.913 16 H 0.054 0.946 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.151 4.151 20 C 0.099 3.901 21 H 0.071 0.929 22 O -0.567 6.567 23 C 0.056 3.944 24 C 0.056 3.944 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.377 0.623 41 H 0.042 0.958 42 H 0.075 0.925 43 H 0.035 0.965 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 -20.892 5.485 21.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.064 4.064 11 N -0.267 5.267 12 C -0.072 4.072 13 C -0.067 4.067 14 N -0.259 5.259 15 C -0.022 4.022 16 H 0.072 0.928 17 C -0.153 4.153 18 C -0.158 4.158 19 C -0.189 4.189 20 C 0.040 3.960 21 H 0.089 0.911 22 O -0.372 6.372 23 C -0.072 4.072 24 C -0.072 4.072 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.224 0.776 41 H 0.060 0.940 42 H 0.094 0.906 43 H 0.053 0.947 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.239 -20.797 4.939 21.411 hybrid contribution 0.101 1.027 0.507 1.150 sum -1.138 -19.769 5.447 20.537 Atomic orbital electron populations 1.69974 1.06019 1.26481 1.50822 1.24997 0.94846 0.99215 0.95309 0.86533 0.80101 0.83778 0.77560 1.19762 1.20995 1.21042 1.21225 0.93049 0.90996 1.50639 0.92702 1.19240 0.94130 0.90549 0.97736 1.22307 0.96991 0.88089 0.98974 1.62278 1.11927 1.03750 1.48730 1.22105 0.94864 0.90456 0.99786 1.22136 0.93312 0.97772 0.93492 1.62325 1.11952 1.01965 1.49635 1.22145 0.92176 0.89935 0.97946 0.92787 1.22429 0.98203 0.94840 0.99848 1.22411 0.97746 0.97239 0.98363 1.23031 1.00448 0.97008 0.98456 1.22517 0.83455 0.97472 0.92554 0.91102 1.86524 1.16138 1.95438 1.39124 1.22281 0.94669 0.90093 1.00168 1.22231 0.94522 0.96708 0.93786 0.93055 0.95763 0.96162 0.96171 0.91989 0.94621 0.90807 0.90745 0.94178 0.91610 0.90171 0.91443 0.91466 0.90631 0.91310 0.77623 0.94001 0.90633 0.94692 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.54 4.24 -27.88 -0.12 0.42 16 10 C 0.06 1.37 5.22 -3.82 -0.02 1.35 16 11 N -0.54 -10.30 4.86 -234.47 -1.14 -11.43 16 12 C 0.06 0.89 5.58 -3.77 -0.02 0.86 16 13 C 0.06 0.83 5.43 -3.77 -0.02 0.81 16 14 N -0.53 -7.35 4.50 -225.15 -1.01 -8.36 16 15 C 0.09 1.04 2.48 -66.60 -0.16 0.88 16 16 H 0.05 0.74 7.95 -51.93 -0.41 0.33 16 17 C -0.12 -1.13 5.22 -25.07 -0.13 -1.26 16 18 C -0.12 -1.01 6.91 -24.74 -0.17 -1.18 16 19 C -0.15 -1.30 6.56 -25.04 -0.16 -1.46 16 20 C 0.10 1.06 3.37 -25.59 -0.09 0.98 16 21 H 0.07 0.82 6.11 -51.93 -0.32 0.50 16 22 O -0.57 -6.16 13.22 -35.23 -0.47 -6.62 16 23 C 0.06 0.86 5.29 -3.77 -0.02 0.84 16 24 C 0.06 1.02 4.93 -3.77 -0.02 1.00 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.55 6.26 -51.93 -0.33 0.23 16 28 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 29 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.85 7.00 -51.93 -0.36 0.49 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.81 7.91 -51.93 -0.41 0.40 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.50 8.06 -51.93 -0.42 0.08 16 40 H 0.38 2.46 9.09 45.56 0.41 2.87 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.08 6.01 -51.93 -0.31 0.77 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.10 1.97 5.99 -51.93 -0.31 1.66 16 LS Contribution 334.58 15.07 5.04 5.04 Total: -1.00 -31.20 334.58 -10.27 -41.48 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.07 Total: -0.29 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -1.35 Total: -10.38 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -1.42 Total: -45.99 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.47 Total: -6.62 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.20 -10.27 -41.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609572672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.579 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds