Wall clock time and date at job start Mon Mar 30 2020 01:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00122 * 2 1 4 4 H 1.48501 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46974 * 299.99756 * 3 2 1 6 6 H 1.48500 * 109.47508 * 59.99979 * 3 2 1 7 7 C 1.37878 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99796 * 0.02562 * 7 2 1 10 10 C 1.53010 * 109.46728 * 179.97438 * 9 7 2 11 11 N 1.46899 * 109.46550 * 179.97438 * 10 9 7 12 12 C 1.46958 * 110.99667 * 189.99811 * 11 10 9 13 13 C 1.53048 * 109.36381 * 183.18871 * 12 11 10 14 14 N 1.46958 * 109.36915 * 301.60024 * 13 12 11 15 15 C 1.46893 * 111.00337 * 183.19049 * 14 13 12 16 16 H 1.09002 * 110.05867 * 301.41771 * 15 14 13 17 17 C 1.54271 * 110.03470 * 62.83287 * 15 14 13 18 18 C 1.54884 * 104.19770 * 142.89616 * 17 15 14 19 19 C 1.54894 * 102.74702 * 322.05883 * 18 17 15 20 20 C 1.53873 * 110.03337 * 180.02562 * 15 14 13 21 21 H 1.09002 * 110.03070 * 359.97438 * 20 15 14 22 22 O 1.42901 * 110.03411 * 121.38002 * 20 15 14 23 23 C 1.46957 * 110.87585 * 59.31775 * 14 13 12 24 24 C 1.46949 * 111.00501 * 313.79874 * 11 10 9 25 25 H 0.96998 * 119.99843 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47671 * 59.99712 * 9 7 2 27 27 H 1.08999 * 109.47184 * 299.99174 * 9 7 2 28 28 H 1.08994 * 109.46725 * 60.00256 * 10 9 7 29 29 H 1.08999 * 109.47020 * 299.99772 * 10 9 7 30 30 H 1.09006 * 109.48502 * 63.22569 * 12 11 10 31 31 H 1.08996 * 109.51147 * 303.16890 * 12 11 10 32 32 H 1.09006 * 109.48745 * 181.63412 * 13 12 11 33 33 H 1.08999 * 109.48833 * 61.57148 * 13 12 11 34 34 H 1.09002 * 110.48328 * 261.57464 * 17 15 14 35 35 H 1.08994 * 110.48367 * 24.21427 * 17 15 14 36 36 H 1.08996 * 110.75718 * 80.36910 * 18 17 15 37 37 H 1.08991 * 110.75873 * 203.55863 * 18 17 15 38 38 H 1.08998 * 110.48844 * 279.26280 * 19 18 17 39 39 H 1.09001 * 110.48508 * 156.62189 * 19 18 17 40 40 H 0.96692 * 114.00025 * 179.30857 * 22 20 15 41 41 H 1.09004 * 109.48703 * 60.65439 * 23 14 13 42 42 H 1.09003 * 109.48666 * 180.71066 * 23 14 13 43 43 H 1.08999 * 109.49076 * 296.78330 * 24 11 10 44 44 H 1.09000 * 109.48879 * 56.82334 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5106 -4.9342 0.0012 12 6 2.4175 -6.0659 0.2394 13 6 1.6290 -7.3748 0.1535 14 7 0.5436 -7.3559 1.1441 15 6 -0.1909 -8.6280 1.1447 16 1 -0.6044 -8.8214 0.1549 17 6 0.7477 -9.7799 1.5596 18 6 -0.1485 -10.7115 2.4128 19 6 -1.0292 -9.7105 3.2012 20 6 -1.3210 -8.5836 2.1880 21 1 -1.3242 -7.6183 2.6942 22 8 -2.5818 -8.8081 1.5539 23 6 -0.3632 -6.2242 0.9058 24 6 0.4253 -4.9153 0.9917 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 2.8718 -3.6043 0.8905 29 1 2.8718 -3.6044 -0.8895 30 1 2.8618 -5.9733 1.2305 31 1 3.2053 -6.0658 -0.5138 32 1 2.2938 -8.2139 0.3586 33 1 1.2073 -7.4804 -0.8461 34 1 1.1170 -10.3068 0.6797 35 1 1.5782 -9.3999 2.1543 36 1 -0.7627 -11.3471 1.7750 37 1 0.4559 -11.3151 3.0899 38 1 -0.4856 -9.3192 4.0611 39 1 -1.9566 -10.1867 3.5194 40 1 -3.3341 -8.8026 2.1613 41 1 -0.8076 -6.3168 -0.0852 42 1 -1.1508 -6.2245 1.6593 43 1 0.8470 -4.8097 1.9912 44 1 -0.2393 -4.0759 0.7869 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609572672.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:08 Heat of formation + Delta-G solvation = -70.842447 kcal Electronic energy + Delta-G solvation = -21323.301290 eV Core-core repulsion = 18273.932835 eV Total energy + Delta-G solvation = -3049.368455 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.96200 -39.24391 -36.78394 -35.56138 -34.70471 -32.24330 -31.59110 -29.11588 -28.64993 -26.73493 -25.22725 -24.57649 -22.23757 -21.60228 -20.96812 -20.49313 -18.74973 -18.26858 -17.25075 -16.60965 -16.53359 -16.19108 -15.96301 -15.72978 -15.51259 -15.22563 -15.00501 -14.26688 -14.16398 -13.80244 -13.44570 -13.36080 -13.13883 -12.93253 -12.85046 -12.65556 -12.36532 -12.29446 -12.10900 -11.97455 -11.91807 -11.70396 -11.64373 -11.35714 -11.20768 -11.11446 -10.76648 -10.56010 -9.43818 -9.19970 -8.21318 -6.32654 1.39770 1.40264 1.53694 2.39639 2.69139 3.04372 3.12109 3.35716 3.54946 3.77661 3.95301 4.03806 4.10531 4.18559 4.27855 4.38833 4.41983 4.48205 4.49665 4.54273 4.61553 4.69109 4.71265 4.79730 4.86112 4.92002 4.96922 4.97881 5.00504 5.05607 5.10772 5.16666 5.18373 5.42888 5.43800 5.62833 5.76020 5.93570 6.00155 6.13764 6.28455 6.31491 6.83751 6.88761 7.36439 8.90926 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.037491 B = 0.003581 C = 0.003375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.663219 B = 7816.288399 C = 8294.063735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.544 4.544 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.079 3.921 11 N -0.552 5.552 12 C 0.056 3.944 13 C 0.065 3.935 14 N -0.532 5.532 15 C 0.083 3.917 16 H 0.035 0.965 17 C -0.111 4.111 18 C -0.116 4.116 19 C -0.146 4.146 20 C 0.097 3.903 21 H 0.060 0.940 22 O -0.584 6.584 23 C 0.068 3.932 24 C 0.062 3.938 25 H 0.264 0.736 26 H -0.009 1.009 27 H 0.000 1.000 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.036 0.964 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.031 0.969 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.394 0.606 41 H 0.025 0.975 42 H 0.086 0.914 43 H 0.029 0.971 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -22.217 6.260 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.048 4.048 11 N -0.277 5.277 12 C -0.072 4.072 13 C -0.062 4.062 14 N -0.258 5.258 15 C -0.025 4.025 16 H 0.053 0.947 17 C -0.149 4.149 18 C -0.153 4.153 19 C -0.183 4.183 20 C 0.038 3.962 21 H 0.078 0.922 22 O -0.392 6.392 23 C -0.060 4.060 24 C -0.067 4.067 25 H 0.073 0.927 26 H 0.009 0.991 27 H 0.019 0.981 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.123 0.877 33 H 0.050 0.950 34 H 0.093 0.907 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.244 0.756 41 H 0.044 0.956 42 H 0.105 0.895 43 H 0.047 0.953 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.013 -22.149 5.725 22.877 hybrid contribution -0.343 1.403 0.256 1.467 sum -0.356 -20.746 5.980 21.594 Atomic orbital electron populations 1.70110 1.07804 1.27743 1.51445 1.25972 0.95783 1.03361 0.94588 0.85361 0.79048 0.78585 0.77802 1.18554 1.20359 1.20277 1.21643 0.93538 0.92221 1.50871 0.92176 1.19052 0.94292 0.92197 0.95146 1.21978 0.95738 0.88024 0.99080 1.62243 1.12570 1.03615 1.49289 1.22226 0.94856 0.89826 1.00269 1.22152 0.93470 0.97538 0.93089 1.62362 1.11755 1.02229 1.49416 1.22278 0.93191 0.89561 0.97513 0.94732 1.22423 0.97886 0.94108 1.00485 1.22413 0.97589 0.96993 0.98349 1.22997 1.01356 0.96178 0.97807 1.22500 0.83182 0.97999 0.92502 0.92247 1.86482 1.16919 1.95436 1.40406 1.22079 0.94709 0.89573 0.99641 1.22085 0.94094 0.97306 0.93177 0.92737 0.99072 0.98129 0.96082 0.91666 0.94543 0.89369 0.87711 0.95038 0.90744 0.90094 0.91450 0.89714 0.90250 0.89760 0.75585 0.95627 0.89538 0.95251 0.91797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.13 16 2 C 0.00 0.05 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.79 29.54 68.60 2.03 46.82 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.42 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.03 1.66 4.24 29.85 0.13 1.79 16 10 C 0.08 3.50 5.22 86.31 0.45 3.95 16 11 N -0.55 -21.30 4.86 -895.73 -4.35 -25.65 16 12 C 0.06 1.69 5.58 86.31 0.48 2.18 16 13 C 0.07 1.68 5.43 86.31 0.47 2.15 16 14 N -0.53 -14.22 4.50 -866.24 -3.89 -18.11 16 15 C 0.08 1.89 2.48 45.64 0.11 2.00 16 16 H 0.03 0.94 7.95 -2.39 -0.02 0.92 16 17 C -0.11 -1.90 5.22 31.67 0.17 -1.73 16 18 C -0.12 -1.62 6.91 31.89 0.22 -1.40 16 19 C -0.15 -2.14 6.56 31.69 0.21 -1.93 16 20 C 0.10 1.97 3.37 31.34 0.11 2.08 16 21 H 0.06 1.33 6.11 -2.39 -0.01 1.31 16 22 O -0.58 -12.10 13.22 -148.98 -1.97 -14.07 16 23 C 0.07 2.15 5.29 86.31 0.46 2.61 16 24 C 0.06 2.35 4.93 86.31 0.43 2.78 16 25 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 26 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 27 H 0.00 0.03 6.26 -2.39 -0.01 0.01 16 28 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 29 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 30 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.10 2.10 7.00 -2.38 -0.02 2.08 16 33 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.08 1.40 7.91 -2.39 -0.02 1.38 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 0.99 8.06 -2.39 -0.02 0.97 16 40 H 0.39 4.65 9.09 -74.06 -0.67 3.98 16 41 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.09 2.52 6.01 -2.39 -0.01 2.51 16 43 H 0.03 1.13 8.14 -2.39 -0.02 1.12 16 44 H 0.06 2.82 5.99 -2.39 -0.01 2.80 16 Total: -1.00 -68.02 334.58 -3.70 -71.72 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.29 Total: 12.86 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 3.92 Total: -16.43 kcal Atomic # 7 Polarization: -92.93 SS G_CDS: -7.96 Total: -100.89 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: -1.97 Total: -14.07 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -68.02 -3.70 -71.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609572672.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.879 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds