Wall clock time and date at job start Mon Mar 30 2020 01:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48503 * 109.47093 * 270.00236 * 3 2 1 5 5 H 1.48502 * 109.47108 * 30.00033 * 3 2 1 6 6 H 1.48496 * 109.47236 * 150.00321 * 3 2 1 7 7 C 1.37877 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99942 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47142 * 175.14080 * 9 7 2 11 11 C 1.46956 * 110.99983 * 295.34873 * 10 9 7 12 12 C 1.53045 * 109.36415 * 183.18741 * 11 10 9 13 13 N 1.46954 * 109.36635 * 301.59621 * 12 11 10 14 14 C 1.46895 * 111.00213 * 183.18595 * 13 12 11 15 15 C 1.53005 * 109.46915 * 77.11934 * 14 13 12 16 16 O 1.42901 * 110.43223 * 293.93736 * 15 14 13 17 17 C 1.54886 * 110.59706 * 56.55886 * 15 14 13 18 18 C 1.54892 * 102.74804 * 156.67954 * 17 15 14 19 19 C 1.54276 * 104.19216 * 322.05515 * 18 17 15 20 20 C 1.53866 * 106.59923 * 23.60919 * 19 18 17 21 21 C 1.46956 * 110.87753 * 59.32158 * 13 12 11 22 22 C 1.46954 * 110.99775 * 59.14728 * 10 9 7 23 23 H 0.96996 * 119.99144 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47222 * 55.14352 * 9 7 2 25 25 H 1.08995 * 109.47314 * 295.14099 * 9 7 2 26 26 H 1.09000 * 109.48898 * 63.21798 * 11 10 9 27 27 H 1.09005 * 109.48836 * 303.15294 * 11 10 9 28 28 H 1.09003 * 109.48988 * 181.62496 * 12 11 10 29 29 H 1.09006 * 109.50695 * 61.57693 * 12 11 10 30 30 H 1.08999 * 109.47202 * 317.12263 * 14 13 12 31 31 H 1.09002 * 109.47417 * 197.11842 * 14 13 12 32 32 H 0.96698 * 113.99854 * 178.15842 * 16 15 14 33 33 H 1.09001 * 110.75792 * 274.98835 * 17 15 14 34 34 H 1.09002 * 110.76091 * 38.36145 * 17 15 14 35 35 H 1.09000 * 110.48368 * 203.38138 * 18 17 15 36 36 H 1.08993 * 110.49231 * 80.72964 * 18 17 15 37 37 H 1.09005 * 110.03126 * 264.32653 * 19 18 17 38 38 H 1.09002 * 110.03065 * 142.89996 * 19 18 17 39 39 H 1.08999 * 110.04032 * 240.71547 * 20 19 18 40 40 H 1.09002 * 110.07219 * 119.30828 * 20 19 18 41 41 H 1.09001 * 109.49333 * 60.64604 * 21 13 12 42 42 H 1.09005 * 109.48836 * 180.71419 * 21 13 12 43 43 H 1.08998 * 109.49175 * 296.77854 * 22 10 9 44 44 H 1.08990 * 109.49160 * 56.84309 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2013 -3.6132 -0.1185 11 6 2.8964 -3.5778 -1.4128 12 6 3.8159 -4.7957 -1.5285 13 7 4.7775 -4.7877 -0.4173 14 6 5.7277 -5.9017 -0.5351 15 6 6.7752 -5.5681 -1.5993 16 8 6.1680 -5.4931 -2.8908 17 6 7.4928 -4.2382 -1.2595 18 6 8.8363 -4.3711 -2.0187 19 6 9.2147 -5.8584 -1.8604 20 6 7.9042 -6.6194 -1.5938 21 6 4.0824 -4.8231 0.8771 22 6 3.1628 -3.6051 0.9928 23 1 -0.4849 0.8401 0.0004 24 1 0.5604 -2.5200 -0.8436 25 1 0.6917 -2.5957 0.9299 26 1 3.4898 -2.6662 -1.4820 27 1 2.1637 -3.5973 -2.2197 28 1 4.3542 -4.7564 -2.4755 29 1 3.2196 -5.7073 -1.4868 30 1 5.1927 -6.8066 -0.8231 31 1 6.2216 -6.0611 0.4234 32 1 6.7808 -5.2566 -3.6004 33 1 6.9227 -3.3861 -1.6297 34 1 7.6623 -4.1540 -0.1861 35 1 9.5955 -3.7340 -1.5650 36 1 8.7061 -4.1207 -3.0715 37 1 9.8965 -5.9827 -1.0191 38 1 9.6797 -6.2247 -2.7757 39 1 7.9499 -7.1131 -0.6231 40 1 7.7327 -7.3556 -2.3790 41 1 3.4889 -5.7347 0.9463 42 1 4.8151 -4.8036 1.6839 43 1 3.7594 -2.6938 0.9509 44 1 2.6246 -3.6445 1.9397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:33 Heat of formation + Delta-G solvation = -50.276149 kcal Electronic energy + Delta-G solvation = -21853.689496 eV Core-core repulsion = 18805.212862 eV Total energy + Delta-G solvation = -3048.476634 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.70853 -38.09121 -34.91813 -34.47693 -32.34309 -30.16370 -29.85437 -28.84412 -27.17255 -25.07923 -23.18945 -22.79880 -21.39329 -20.60699 -19.94539 -18.92494 -16.89041 -16.33117 -16.04885 -15.33222 -14.85298 -14.55302 -14.47248 -14.05104 -13.88713 -13.85074 -13.51734 -12.98415 -12.76236 -12.25326 -11.99565 -11.73075 -11.61158 -11.49617 -11.29721 -11.12461 -10.98793 -10.96927 -10.74721 -10.62229 -10.49273 -10.39083 -10.14203 -9.96876 -9.82947 -9.63186 -9.33953 -8.37464 -7.91120 -7.06592 -5.96752 -4.05422 3.31146 3.37657 3.41373 4.08403 4.21563 4.45644 4.48418 4.63044 4.71905 5.04435 5.18932 5.29390 5.33449 5.39650 5.41849 5.47965 5.55298 5.60229 5.70391 5.71817 5.80641 5.81455 5.92819 6.00820 6.09152 6.13087 6.19245 6.23302 6.34355 6.36697 6.55083 6.80292 6.88072 6.99324 7.32003 7.45442 7.55572 7.59205 7.72473 7.96622 8.15497 8.36506 8.40266 9.05805 9.61122 11.08166 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.004763 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.863924 B = 5877.417680 C = 6454.748109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.186 3.814 10 N -0.545 5.545 11 C 0.066 3.934 12 C 0.056 3.944 13 N -0.529 5.529 14 C 0.073 3.927 15 C 0.137 3.863 16 O -0.547 6.547 17 C -0.132 4.132 18 C -0.134 4.134 19 C -0.125 4.125 20 C -0.153 4.153 21 C 0.057 3.943 22 C 0.066 3.934 23 H 0.261 0.739 24 H 0.032 0.968 25 H 0.026 0.974 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.095 0.905 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.368 0.632 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.031 0.969 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.714 -12.411 -3.093 21.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.061 3.939 10 N -0.269 5.269 11 C -0.063 4.063 12 C -0.071 4.071 13 N -0.254 5.254 14 C -0.056 4.056 15 C 0.096 3.904 16 O -0.353 6.353 17 C -0.170 4.170 18 C -0.172 4.172 19 C -0.163 4.163 20 C -0.191 4.191 21 C -0.071 4.071 22 C -0.063 4.063 23 H 0.071 0.929 24 H 0.051 0.949 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.113 0.887 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.216 0.784 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.998 -12.463 -2.733 20.463 hybrid contribution 0.964 1.165 -0.240 1.531 sum 16.963 -11.298 -2.973 20.597 Atomic orbital electron populations 1.69956 1.06016 1.26698 1.50534 1.24966 0.94739 0.99097 0.95041 0.86651 0.79922 0.83684 0.78104 1.20687 1.21230 1.19955 1.21789 0.93456 0.92030 1.51147 0.92293 1.19728 0.90936 0.85633 0.97630 1.62683 1.16666 1.46519 1.01044 1.21929 0.95436 0.96265 0.92703 1.22457 0.92655 0.97436 0.94564 1.62090 1.18055 1.42228 1.03010 1.22010 0.93922 0.92870 0.96779 1.22008 0.91186 0.93573 0.83657 1.86569 1.39401 1.92564 1.16718 1.22951 0.94660 0.98402 1.00940 1.22467 0.98188 0.95992 1.00530 1.22140 0.97211 0.95489 1.01431 1.22869 0.95018 0.98611 1.02617 1.22256 0.95775 0.98514 0.90561 1.21898 0.93420 0.95882 0.95139 0.92913 0.94940 0.95553 0.93675 0.91758 0.88670 0.95629 0.94422 0.90281 0.78441 0.89965 0.90717 0.91578 0.91830 0.91854 0.92051 0.91034 0.91082 0.95058 0.91636 0.93409 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.55 -15.31 7.67 -34.44 -0.26 -15.58 16 8 H 0.06 1.66 5.81 -52.48 -0.31 1.36 16 9 C 0.19 4.96 5.14 -4.97 -0.03 4.93 16 10 N -0.54 -12.28 4.92 -235.91 -1.16 -13.44 16 11 C 0.07 1.37 5.32 -3.77 -0.02 1.35 16 12 C 0.06 0.99 5.33 -3.77 -0.02 0.97 16 13 N -0.53 -8.45 4.17 -234.46 -0.98 -9.43 16 14 C 0.07 0.94 4.30 -3.82 -0.02 0.92 16 15 C 0.14 1.53 1.03 -88.96 -0.09 1.44 16 16 O -0.55 -6.50 10.34 -35.23 -0.36 -6.86 16 17 C -0.13 -1.48 5.59 -24.74 -0.14 -1.62 16 18 C -0.13 -1.18 6.52 -25.07 -0.16 -1.34 16 19 C -0.13 -0.99 6.80 -25.61 -0.17 -1.16 16 20 C -0.15 -1.36 6.11 -25.62 -0.16 -1.51 16 21 C 0.06 0.94 5.56 -3.77 -0.02 0.92 16 22 C 0.07 1.33 5.24 -3.77 -0.02 1.31 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H 0.03 0.93 8.12 -51.93 -0.42 0.51 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.04 1.04 6.96 -51.93 -0.36 0.68 16 27 H 0.06 1.35 8.12 -51.93 -0.42 0.93 16 28 H 0.10 1.61 5.42 -51.93 -0.28 1.32 16 29 H 0.03 0.46 8.13 -51.93 -0.42 0.04 16 30 H 0.04 0.51 7.97 -51.93 -0.41 0.10 16 31 H 0.08 0.90 7.67 -51.93 -0.40 0.51 16 32 H 0.37 3.18 8.44 45.56 0.38 3.57 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.51 7.86 -51.93 -0.41 0.11 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.60 7.74 -51.93 -0.40 0.20 16 40 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.94 7.99 -51.93 -0.42 0.53 16 43 H 0.05 1.07 6.45 -51.93 -0.33 0.74 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -30.19 331.78 -10.13 -40.32 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -7.13 Total: 1.23 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -1.21 Total: -7.64 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: -1.40 Total: -48.86 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.36 Total: -6.86 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.19 -10.13 -40.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.955 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds