Wall clock time and date at job start Mon Mar 30 2020 01:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 120.00183 * 2 1 4 4 H 1.48503 * 109.47093 * 270.00236 * 3 2 1 5 5 H 1.48502 * 109.47108 * 30.00033 * 3 2 1 6 6 H 1.48496 * 109.47236 * 150.00321 * 3 2 1 7 7 C 1.37877 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00080 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99942 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47142 * 175.14080 * 9 7 2 11 11 C 1.46956 * 110.99983 * 295.34873 * 10 9 7 12 12 C 1.53045 * 109.36415 * 183.18741 * 11 10 9 13 13 N 1.46954 * 109.36635 * 301.59621 * 12 11 10 14 14 C 1.46895 * 111.00213 * 183.18595 * 13 12 11 15 15 C 1.53005 * 109.46915 * 77.11934 * 14 13 12 16 16 O 1.42901 * 110.43223 * 293.93736 * 15 14 13 17 17 C 1.54886 * 110.59706 * 56.55886 * 15 14 13 18 18 C 1.54892 * 102.74804 * 156.67954 * 17 15 14 19 19 C 1.54276 * 104.19216 * 322.05515 * 18 17 15 20 20 C 1.53866 * 106.59923 * 23.60919 * 19 18 17 21 21 C 1.46956 * 110.87753 * 59.32158 * 13 12 11 22 22 C 1.46954 * 110.99775 * 59.14728 * 10 9 7 23 23 H 0.96996 * 119.99144 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47222 * 55.14352 * 9 7 2 25 25 H 1.08995 * 109.47314 * 295.14099 * 9 7 2 26 26 H 1.09000 * 109.48898 * 63.21798 * 11 10 9 27 27 H 1.09005 * 109.48836 * 303.15294 * 11 10 9 28 28 H 1.09003 * 109.48988 * 181.62496 * 12 11 10 29 29 H 1.09006 * 109.50695 * 61.57693 * 12 11 10 30 30 H 1.08999 * 109.47202 * 317.12263 * 14 13 12 31 31 H 1.09002 * 109.47417 * 197.11842 * 14 13 12 32 32 H 0.96698 * 113.99854 * 178.15842 * 16 15 14 33 33 H 1.09001 * 110.75792 * 274.98835 * 17 15 14 34 34 H 1.09002 * 110.76091 * 38.36145 * 17 15 14 35 35 H 1.09000 * 110.48368 * 203.38138 * 18 17 15 36 36 H 1.08993 * 110.49231 * 80.72964 * 18 17 15 37 37 H 1.09005 * 110.03126 * 264.32653 * 19 18 17 38 38 H 1.09002 * 110.03065 * 142.89996 * 19 18 17 39 39 H 1.08999 * 110.04032 * 240.71547 * 20 19 18 40 40 H 1.09002 * 110.07219 * 119.30828 * 20 19 18 41 41 H 1.09001 * 109.49333 * 60.64604 * 21 13 12 42 42 H 1.09005 * 109.48836 * 180.71419 * 21 13 12 43 43 H 1.08998 * 109.49175 * 296.77854 * 22 10 9 44 44 H 1.08990 * 109.49160 * 56.84309 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2013 -3.6132 -0.1185 11 6 2.8964 -3.5778 -1.4128 12 6 3.8159 -4.7957 -1.5285 13 7 4.7775 -4.7877 -0.4173 14 6 5.7277 -5.9017 -0.5351 15 6 6.7752 -5.5681 -1.5993 16 8 6.1680 -5.4931 -2.8908 17 6 7.4928 -4.2382 -1.2595 18 6 8.8363 -4.3711 -2.0187 19 6 9.2147 -5.8584 -1.8604 20 6 7.9042 -6.6194 -1.5938 21 6 4.0824 -4.8231 0.8771 22 6 3.1628 -3.6051 0.9928 23 1 -0.4849 0.8401 0.0004 24 1 0.5604 -2.5200 -0.8436 25 1 0.6917 -2.5957 0.9299 26 1 3.4898 -2.6662 -1.4820 27 1 2.1637 -3.5973 -2.2197 28 1 4.3542 -4.7564 -2.4755 29 1 3.2196 -5.7073 -1.4868 30 1 5.1927 -6.8066 -0.8231 31 1 6.2216 -6.0611 0.4234 32 1 6.7808 -5.2566 -3.6004 33 1 6.9227 -3.3861 -1.6297 34 1 7.6623 -4.1540 -0.1861 35 1 9.5955 -3.7340 -1.5650 36 1 8.7061 -4.1207 -3.0715 37 1 9.8965 -5.9827 -1.0191 38 1 9.6797 -6.2247 -2.7757 39 1 7.9499 -7.1131 -0.6231 40 1 7.7327 -7.3556 -2.3790 41 1 3.4889 -5.7347 0.9463 42 1 4.8151 -4.8036 1.6839 43 1 3.7594 -2.6938 0.9509 44 1 2.6246 -3.6445 1.9397 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175604.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:33 Heat of formation + Delta-G solvation = -72.531280 kcal Electronic energy + Delta-G solvation = -21854.654551 eV Core-core repulsion = 18805.212862 eV Total energy + Delta-G solvation = -3049.441688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73926 -39.48808 -36.49908 -35.33360 -34.42137 -31.71555 -31.11959 -29.62373 -28.81562 -26.74780 -24.56158 -24.35584 -23.13740 -21.35973 -20.83699 -20.56997 -18.45163 -17.76796 -17.15967 -16.76131 -16.25443 -15.92771 -15.80301 -15.70760 -15.35764 -14.91808 -14.58175 -14.54434 -14.13955 -13.65222 -13.43295 -13.28069 -13.01821 -12.82878 -12.73606 -12.40490 -12.18756 -12.13791 -12.10343 -12.01986 -11.88369 -11.79230 -11.77525 -11.51681 -11.28387 -11.13265 -10.61689 -10.51476 -9.22414 -8.99545 -8.15676 -6.35358 1.35947 1.36298 1.47570 2.37058 2.94588 3.08705 3.33926 3.44152 3.73424 3.79473 3.92965 4.11960 4.20319 4.30616 4.43316 4.48673 4.54687 4.59921 4.66367 4.67111 4.73465 4.79541 4.80118 4.88378 4.98608 5.03247 5.12353 5.13051 5.18696 5.22343 5.25831 5.27435 5.32554 5.43657 5.49489 5.52977 5.73019 6.03875 6.15786 6.16038 6.33493 6.53813 6.85296 6.97584 7.35951 8.86921 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024776 B = 0.004763 C = 0.004337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.863924 B = 5877.417680 C = 6454.748109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.200 3.800 10 N -0.545 5.545 11 C 0.069 3.931 12 C 0.073 3.927 13 N -0.537 5.537 14 C 0.071 3.929 15 C 0.136 3.864 16 O -0.565 6.565 17 C -0.131 4.131 18 C -0.129 4.129 19 C -0.119 4.119 20 C -0.145 4.145 21 C 0.067 3.933 22 C 0.066 3.934 23 H 0.265 0.735 24 H 0.004 0.996 25 H 0.003 0.997 26 H 0.020 0.980 27 H 0.055 0.945 28 H 0.105 0.895 29 H 0.023 0.977 30 H 0.036 0.964 31 H 0.099 0.901 32 H 0.382 0.618 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.095 0.905 43 H 0.024 0.976 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.346 -13.214 -3.133 23.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.269 5.269 11 C -0.059 4.059 12 C -0.055 4.055 13 N -0.262 5.262 14 C -0.057 4.057 15 C 0.095 3.905 16 O -0.373 6.373 17 C -0.169 4.169 18 C -0.167 4.167 19 C -0.157 4.157 20 C -0.183 4.183 21 C -0.061 4.061 22 C -0.062 4.062 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.021 0.979 26 H 0.039 0.961 27 H 0.073 0.927 28 H 0.123 0.877 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.232 0.768 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.113 0.887 43 H 0.042 0.958 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.657 -13.286 -2.779 23.072 hybrid contribution 0.122 1.389 -0.233 1.414 sum 18.779 -11.897 -3.013 22.434 Atomic orbital electron populations 1.70074 1.07581 1.27874 1.51204 1.25825 0.95614 1.02852 0.94479 0.85549 0.78656 0.79043 0.78409 1.19940 1.20393 1.19311 1.21949 0.93293 0.92883 1.51116 0.92690 1.19395 0.91263 0.86954 0.95105 1.62628 1.17284 1.44326 1.02645 1.21915 0.95358 0.97103 0.91565 1.22239 0.92301 0.95108 0.95831 1.62071 1.17754 1.44274 1.02071 1.22167 0.93501 0.91399 0.98628 1.22014 0.91184 0.94291 0.82983 1.86497 1.40647 1.92693 1.17435 1.22878 0.95819 0.97409 1.00817 1.22438 0.96718 0.97006 1.00535 1.22112 0.96799 0.94317 1.02441 1.22795 0.94286 0.97949 1.03300 1.22163 0.95780 0.96282 0.91902 1.21937 0.93182 0.96994 0.94120 0.92582 0.97775 0.97850 0.96141 0.92656 0.87736 0.95876 0.94615 0.88280 0.76826 0.92893 0.91228 0.91226 0.91197 0.91110 0.90749 0.90228 0.90659 0.94638 0.88729 0.95796 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 2 C 0.01 0.67 5.46 84.65 0.46 1.13 16 3 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 4 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.55 -31.98 7.67 25.60 0.20 -31.78 16 8 H 0.05 3.18 5.81 -2.91 -0.02 3.16 16 9 C 0.20 11.10 5.14 85.56 0.44 11.54 16 10 N -0.54 -25.27 4.92 -900.29 -4.43 -29.69 16 11 C 0.07 2.98 5.32 86.31 0.46 3.44 16 12 C 0.07 2.53 5.33 86.31 0.46 2.99 16 13 N -0.54 -16.48 4.17 -895.71 -3.74 -20.22 16 14 C 0.07 1.66 4.30 86.31 0.37 2.03 16 15 C 0.14 2.74 1.03 -9.72 -0.01 2.73 16 16 O -0.56 -12.41 10.34 -148.98 -1.54 -13.95 16 17 C -0.13 -2.75 5.59 31.89 0.18 -2.58 16 18 C -0.13 -1.96 6.52 31.67 0.21 -1.76 16 19 C -0.12 -1.48 6.80 31.32 0.21 -1.26 16 20 C -0.15 -2.11 6.11 31.32 0.19 -1.92 16 21 C 0.07 2.11 5.56 86.31 0.48 2.59 16 22 C 0.07 2.72 5.24 86.31 0.45 3.18 16 23 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 24 H 0.00 0.25 8.12 -2.38 -0.02 0.23 16 25 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 26 H 0.02 0.97 6.96 -2.39 -0.02 0.95 16 27 H 0.05 2.42 8.12 -2.38 -0.02 2.40 16 28 H 0.10 3.45 5.42 -2.39 -0.01 3.44 16 29 H 0.02 0.81 8.13 -2.38 -0.02 0.79 16 30 H 0.04 0.87 7.97 -2.39 -0.02 0.85 16 31 H 0.10 1.93 7.67 -2.39 -0.02 1.91 16 32 H 0.38 5.87 8.44 -74.06 -0.62 5.25 16 33 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.07 1.51 8.06 -2.39 -0.02 1.49 16 35 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.07 0.97 7.86 -2.39 -0.02 0.95 16 37 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 1.05 7.74 -2.39 -0.02 1.03 16 40 H 0.07 1.06 8.07 -2.39 -0.02 1.05 16 41 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 2.47 7.99 -2.38 -0.02 2.45 16 43 H 0.02 1.09 6.45 -2.39 -0.02 1.08 16 44 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -65.99 331.78 -2.96 -68.95 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.34 Total: 13.75 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 4.10 Total: -9.69 kcal Atomic # 7 Polarization: -98.40 SS G_CDS: -7.88 Total: -106.28 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -1.54 Total: -13.95 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.99 -2.96 -68.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175604.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.580 kcal (2) G-P(sol) polarization free energy of solvation -65.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds