Wall clock time and date at job start Mon Mar 30 2020 01:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48500 * 109.47297 * 269.99732 * 3 2 1 5 5 H 1.48497 * 109.47135 * 29.99843 * 3 2 1 6 6 H 1.48502 * 109.47207 * 149.99552 * 3 2 1 7 7 C 1.37880 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99982 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00156 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47132 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99893 * 169.99899 * 10 9 7 12 12 C 1.53055 * 109.36521 * 183.18979 * 11 10 9 13 13 N 1.46961 * 109.35894 * 301.59526 * 12 11 10 14 14 C 1.46898 * 110.99674 * 183.18733 * 13 12 11 15 15 C 1.53007 * 109.47129 * 75.78022 * 14 13 12 16 16 O 1.42896 * 109.46841 * 65.05516 * 15 14 13 17 17 C 1.42906 * 113.99669 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.46887 * 180.02562 * 17 16 15 19 19 C 1.53002 * 117.49760 * 243.74650 * 18 17 16 20 20 C 1.52999 * 117.49675 * 175.08812 * 18 17 16 21 21 C 1.46956 * 110.88000 * 59.32353 * 13 12 11 22 22 C 1.46952 * 110.99809 * 293.79310 * 10 9 7 23 23 H 0.97004 * 120.00199 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47251 * 59.99540 * 9 7 2 25 25 H 1.09005 * 109.46844 * 299.99707 * 9 7 2 26 26 H 1.09001 * 109.49262 * 63.22133 * 11 10 9 27 27 H 1.09002 * 109.50698 * 303.16148 * 11 10 9 28 28 H 1.09000 * 109.49102 * 181.63591 * 12 11 10 29 29 H 1.08995 * 109.48991 * 61.56425 * 12 11 10 30 30 H 1.08998 * 109.47532 * 315.78323 * 14 13 12 31 31 H 1.09002 * 109.47571 * 195.77644 * 14 13 12 32 32 H 1.08999 * 109.46825 * 185.05487 * 15 14 13 33 33 H 1.09001 * 109.46597 * 305.05390 * 15 14 13 34 34 H 1.09006 * 109.46833 * 300.00116 * 17 16 15 35 35 H 1.09003 * 109.47303 * 59.99782 * 17 16 15 36 36 H 1.08994 * 115.55524 * 29.41693 * 18 17 16 37 37 H 1.09003 * 117.49959 * 359.97438 * 19 18 17 38 38 H 1.08995 * 117.49990 * 145.02505 * 19 18 17 39 39 H 1.09006 * 117.50067 * 214.97965 * 20 18 17 40 40 H 1.09007 * 117.50250 * 359.97438 * 20 18 17 41 41 H 1.09002 * 109.49014 * 60.64605 * 21 13 12 42 42 H 1.09001 * 109.48860 * 180.70849 * 21 13 12 43 43 H 1.08995 * 109.49356 * 296.78130 * 22 10 9 44 44 H 1.08999 * 109.49120 * 56.84942 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5790 -0.0001 11 6 5.4506 -2.6251 -0.2378 12 6 5.9070 -4.0843 -0.3096 13 7 5.5601 -4.7656 0.9455 14 6 6.0498 -6.1505 0.9454 15 6 7.5608 -6.1573 1.1859 16 8 7.8366 -5.6601 2.4969 17 6 9.2272 -5.6240 2.8242 18 6 9.4032 -5.0785 4.2427 19 6 10.1549 -3.7555 4.4026 20 6 10.8179 -5.0689 4.8253 21 6 4.1106 -4.7195 1.1832 22 6 3.6543 -3.2603 1.2550 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8751 -0.6797 -0.8895 26 1 5.9692 -2.1217 0.5781 27 1 5.6812 -2.1253 -1.1786 28 1 6.9864 -4.1209 -0.4569 29 1 5.4089 -4.5805 -1.1425 30 1 5.8332 -6.6124 -0.0178 31 1 5.5534 -6.7116 1.7372 32 1 7.9383 -7.1759 1.0968 33 1 8.0492 -5.5227 0.4464 34 1 9.6397 -6.6315 2.7688 35 1 9.7499 -4.9782 2.1186 36 1 8.5783 -5.2746 4.9276 37 1 10.5244 -3.2740 3.4972 38 1 9.8247 -3.0814 5.1929 39 1 10.9237 -5.2582 5.8936 40 1 11.6232 -5.4515 4.1981 41 1 3.5921 -5.2230 0.3673 42 1 3.8804 -5.2192 2.1241 43 1 4.1524 -2.7641 2.0878 44 1 2.5750 -3.2237 1.4024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:53 Heat of formation + Delta-G solvation = -6.192906 kcal Electronic energy + Delta-G solvation = -20791.330288 eV Core-core repulsion = 17744.765247 eV Total energy + Delta-G solvation = -3046.565041 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.05299 -38.29495 -36.72064 -35.03058 -32.44650 -30.52159 -30.23745 -27.88916 -26.61306 -24.75926 -23.03940 -22.62915 -21.87567 -20.95022 -20.69126 -19.18827 -17.05018 -16.73217 -16.39137 -15.84632 -15.16863 -14.77889 -14.60651 -14.35732 -14.30478 -13.95406 -13.61593 -13.28628 -13.11613 -12.70551 -12.39199 -11.93237 -11.78800 -11.66418 -11.62566 -11.37118 -11.18013 -10.85032 -10.75968 -10.65800 -10.50125 -10.41752 -10.28439 -9.98016 -9.76974 -9.54334 -9.22690 -8.54048 -8.05496 -7.30714 -6.02641 -3.99661 3.30933 3.34338 3.38226 3.41411 3.71394 4.07756 4.44936 4.56630 4.64951 4.78209 4.82714 5.04569 5.06953 5.11462 5.27182 5.28278 5.31082 5.35630 5.41027 5.42863 5.50929 5.57233 5.65480 5.73144 5.76819 5.84919 5.88384 5.93776 5.99600 6.05937 6.18916 6.37684 6.57762 6.70198 6.89073 7.02528 7.14146 7.32165 7.36488 7.63688 7.96287 8.10560 8.69535 9.05498 9.59493 11.10495 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.003758 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.012151 B = 7449.514379 C = 8168.061119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.508 4.508 8 H 0.080 0.920 9 C 0.162 3.838 10 N -0.530 5.530 11 C 0.055 3.945 12 C 0.060 3.940 13 N -0.531 5.531 14 C 0.056 3.944 15 C 0.071 3.929 16 O -0.366 6.366 17 C 0.093 3.907 18 C -0.149 4.149 19 C -0.176 4.176 20 C -0.178 4.178 21 C 0.060 3.940 22 C 0.067 3.933 23 H 0.263 0.737 24 H -0.011 1.011 25 H 0.023 0.977 26 H 0.031 0.969 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.038 0.962 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.133 -12.685 5.044 24.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.546 4.546 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.255 5.255 11 C -0.074 4.074 12 C -0.068 4.068 13 N -0.256 5.256 14 C -0.073 4.073 15 C -0.006 4.006 16 O -0.285 6.285 17 C 0.016 3.984 18 C -0.167 4.167 19 C -0.213 4.213 20 C -0.215 4.215 21 C -0.068 4.068 22 C -0.061 4.061 23 H 0.073 0.927 24 H 0.007 0.993 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.056 0.944 42 H 0.090 0.910 43 H 0.048 0.952 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.819 -12.494 5.169 23.992 hybrid contribution 0.629 0.913 -0.243 1.135 sum 20.448 -11.581 4.927 24.011 Atomic orbital electron populations 1.69894 1.06122 1.26807 1.51238 1.24898 0.94731 0.98856 0.94866 0.86861 0.80358 0.84009 0.78547 1.20189 1.21213 1.19240 1.21037 0.88757 0.94682 1.50162 0.90188 1.20149 0.97008 0.84181 0.95040 1.62109 1.10358 1.19020 1.33987 1.22089 0.90239 0.94813 1.00285 1.22180 0.99259 0.95224 0.90125 1.62107 1.14770 1.14126 1.34571 1.22092 0.93935 0.90619 1.00614 1.22505 0.96328 0.96917 0.84882 1.88015 1.22622 1.85901 1.31935 1.21941 0.83701 0.98802 0.93978 1.22114 0.95837 1.01459 0.97319 1.23062 1.03819 0.90861 1.03518 1.22981 0.95190 1.01921 1.01398 1.22239 0.86249 0.98122 1.00174 1.22018 1.01665 0.91756 0.90663 0.92697 0.99320 0.95901 0.95073 0.91172 0.91437 0.94327 0.93270 0.90191 0.93524 0.93447 0.93512 0.93558 0.86856 0.88717 0.88585 0.88533 0.88868 0.94351 0.90952 0.95194 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.88 13.96 55.43 0.77 -27.11 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 7 C -0.51 -14.66 9.03 -34.44 -0.31 -14.97 16 8 H 0.08 2.50 7.37 -52.49 -0.39 2.11 16 9 C 0.16 4.07 3.79 -4.98 -0.02 4.05 16 10 N -0.53 -11.56 4.70 -235.91 -1.11 -12.67 16 11 C 0.05 0.99 5.61 -3.77 -0.02 0.97 16 12 C 0.06 0.92 5.43 -3.76 -0.02 0.89 16 13 N -0.53 -8.10 4.59 -234.46 -1.08 -9.17 16 14 C 0.06 0.67 5.39 -3.82 -0.02 0.65 16 15 C 0.07 0.77 6.13 37.16 0.23 1.00 16 16 O -0.37 -4.72 10.29 -35.23 -0.36 -5.08 16 17 C 0.09 0.94 6.22 37.16 0.23 1.17 16 18 C -0.15 -1.46 6.05 -90.62 -0.55 -2.01 16 19 C -0.18 -1.57 10.18 -26.69 -0.27 -1.85 16 20 C -0.18 -1.36 10.25 -26.69 -0.27 -1.63 16 21 C 0.06 0.99 5.57 -3.77 -0.02 0.97 16 22 C 0.07 1.37 5.43 -3.77 -0.02 1.34 16 23 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 24 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 25 H 0.02 0.57 7.45 -51.93 -0.39 0.18 16 26 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 28 H 0.07 0.89 6.71 -51.93 -0.35 0.54 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.54 8.00 -51.93 -0.42 0.12 16 31 H 0.08 0.94 7.84 -51.93 -0.41 0.53 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.51 6.74 -51.93 -0.35 0.16 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.45 7.88 -51.93 -0.41 0.04 16 36 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 0.83 8.03 -51.93 -0.42 0.41 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 0.62 8.14 -51.92 -0.42 0.19 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.09 2.01 6.79 -51.93 -0.35 1.66 16 LS Contribution 346.10 15.07 5.22 5.22 Total: -1.00 -31.67 346.10 -10.47 -42.14 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -8.08 Total: -2.99 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.17 Total: -7.51 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -1.41 Total: -48.94 kcal Atomic # 8 Polarization: -4.72 SS G_CDS: -0.36 Total: -5.08 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.67 -10.47 -42.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.947 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds