Wall clock time and date at job start Mon Mar 30 2020 01:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48500 * 109.47297 * 269.99732 * 3 2 1 5 5 H 1.48497 * 109.47135 * 29.99843 * 3 2 1 6 6 H 1.48502 * 109.47207 * 149.99552 * 3 2 1 7 7 C 1.37880 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99982 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00156 * 180.02562 * 7 2 1 10 10 N 1.46898 * 109.47132 * 179.97438 * 9 7 2 11 11 C 1.46956 * 110.99893 * 169.99899 * 10 9 7 12 12 C 1.53055 * 109.36521 * 183.18979 * 11 10 9 13 13 N 1.46961 * 109.35894 * 301.59526 * 12 11 10 14 14 C 1.46898 * 110.99674 * 183.18733 * 13 12 11 15 15 C 1.53007 * 109.47129 * 75.78022 * 14 13 12 16 16 O 1.42896 * 109.46841 * 65.05516 * 15 14 13 17 17 C 1.42906 * 113.99669 * 180.02562 * 16 15 14 18 18 C 1.52997 * 109.46887 * 180.02562 * 17 16 15 19 19 C 1.53002 * 117.49760 * 243.74650 * 18 17 16 20 20 C 1.52999 * 117.49675 * 175.08812 * 18 17 16 21 21 C 1.46956 * 110.88000 * 59.32353 * 13 12 11 22 22 C 1.46952 * 110.99809 * 293.79310 * 10 9 7 23 23 H 0.97004 * 120.00199 * 0.02562 * 1 2 3 24 24 H 1.09005 * 109.47251 * 59.99540 * 9 7 2 25 25 H 1.09005 * 109.46844 * 299.99707 * 9 7 2 26 26 H 1.09001 * 109.49262 * 63.22133 * 11 10 9 27 27 H 1.09002 * 109.50698 * 303.16148 * 11 10 9 28 28 H 1.09000 * 109.49102 * 181.63591 * 12 11 10 29 29 H 1.08995 * 109.48991 * 61.56425 * 12 11 10 30 30 H 1.08998 * 109.47532 * 315.78323 * 14 13 12 31 31 H 1.09002 * 109.47571 * 195.77644 * 14 13 12 32 32 H 1.08999 * 109.46825 * 185.05487 * 15 14 13 33 33 H 1.09001 * 109.46597 * 305.05390 * 15 14 13 34 34 H 1.09006 * 109.46833 * 300.00116 * 17 16 15 35 35 H 1.09003 * 109.47303 * 59.99782 * 17 16 15 36 36 H 1.08994 * 115.55524 * 29.41693 * 18 17 16 37 37 H 1.09003 * 117.49959 * 359.97438 * 19 18 17 38 38 H 1.08995 * 117.49990 * 145.02505 * 19 18 17 39 39 H 1.09006 * 117.50067 * 214.97965 * 20 18 17 40 40 H 1.09007 * 117.50250 * 359.97438 * 20 18 17 41 41 H 1.09002 * 109.49014 * 60.64605 * 21 13 12 42 42 H 1.09001 * 109.48860 * 180.70849 * 21 13 12 43 43 H 1.08995 * 109.49356 * 296.78130 * 22 10 9 44 44 H 1.08999 * 109.49120 * 56.84942 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5790 -0.0001 11 6 5.4506 -2.6251 -0.2378 12 6 5.9070 -4.0843 -0.3096 13 7 5.5601 -4.7656 0.9455 14 6 6.0498 -6.1505 0.9454 15 6 7.5608 -6.1573 1.1859 16 8 7.8366 -5.6601 2.4969 17 6 9.2272 -5.6240 2.8242 18 6 9.4032 -5.0785 4.2427 19 6 10.1549 -3.7555 4.4026 20 6 10.8179 -5.0689 4.8253 21 6 4.1106 -4.7195 1.1832 22 6 3.6543 -3.2603 1.2550 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6808 0.8905 25 1 3.8751 -0.6797 -0.8895 26 1 5.9692 -2.1217 0.5781 27 1 5.6812 -2.1253 -1.1786 28 1 6.9864 -4.1209 -0.4569 29 1 5.4089 -4.5805 -1.1425 30 1 5.8332 -6.6124 -0.0178 31 1 5.5534 -6.7116 1.7372 32 1 7.9383 -7.1759 1.0968 33 1 8.0492 -5.5227 0.4464 34 1 9.6397 -6.6315 2.7688 35 1 9.7499 -4.9782 2.1186 36 1 8.5783 -5.2746 4.9276 37 1 10.5244 -3.2740 3.4972 38 1 9.8247 -3.0814 5.1929 39 1 10.9237 -5.2582 5.8936 40 1 11.6232 -5.4515 4.1981 41 1 3.5921 -5.2230 0.3673 42 1 3.8804 -5.2192 2.1241 43 1 4.1524 -2.7641 2.0878 44 1 2.5750 -3.2237 1.4024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175694.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:52 Heat of formation + Delta-G solvation = -28.654894 kcal Electronic energy + Delta-G solvation = -20792.304313 eV Core-core repulsion = 17744.765247 eV Total energy + Delta-G solvation = -3047.539066 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.30370 -39.21426 -37.60582 -36.44485 -34.56605 -31.90484 -31.59630 -29.46088 -27.59794 -26.22964 -24.46471 -23.34050 -23.23613 -22.40311 -21.47342 -20.65450 -18.95790 -17.84482 -17.46654 -16.82824 -16.45957 -16.02866 -15.98024 -15.75420 -15.63892 -15.11652 -15.08423 -14.86633 -14.36145 -14.03148 -13.81522 -13.36479 -13.09340 -12.84442 -12.73524 -12.59486 -12.39087 -12.27961 -12.18743 -12.02210 -11.84668 -11.73769 -11.50074 -11.33557 -11.24014 -11.08738 -10.78932 -10.32098 -9.25860 -9.04233 -8.29541 -6.33010 1.33648 1.35453 1.46416 2.33585 2.62635 2.92199 3.02414 3.03117 3.21124 3.86279 3.96603 3.98256 4.03497 4.17950 4.20906 4.29006 4.36562 4.39095 4.44703 4.45042 4.54885 4.60826 4.66317 4.68643 4.73315 4.77418 4.80104 4.85735 4.95362 4.98301 4.99719 5.01760 5.11752 5.16654 5.23441 5.27248 5.51262 5.93151 6.07090 6.15860 6.34909 6.47126 6.63980 6.72479 7.30681 8.87020 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.003758 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.012151 B = 7449.514379 C = 8168.061119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C 0.009 3.991 3 Si 0.948 3.052 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.256 1.256 7 C -0.517 4.517 8 H 0.038 0.962 9 C 0.173 3.827 10 N -0.544 5.544 11 C 0.053 3.947 12 C 0.068 3.932 13 N -0.542 5.542 14 C 0.055 3.945 15 C 0.071 3.929 16 O -0.396 6.396 17 C 0.092 3.908 18 C -0.168 4.168 19 C -0.186 4.186 20 C -0.158 4.158 21 C 0.072 3.928 22 C 0.071 3.929 23 H 0.267 0.733 24 H -0.017 1.017 25 H 0.030 0.970 26 H 0.025 0.975 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.039 0.961 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.035 0.965 42 H 0.087 0.913 43 H 0.019 0.981 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.120 -13.123 4.738 27.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.771 3.229 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.180 1.180 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.046 3.954 10 N -0.269 5.269 11 C -0.076 4.076 12 C -0.060 4.060 13 N -0.267 5.267 14 C -0.072 4.072 15 C -0.005 4.005 16 O -0.315 6.315 17 C 0.016 3.984 18 C -0.186 4.186 19 C -0.223 4.223 20 C -0.195 4.195 21 C -0.056 4.056 22 C -0.057 4.057 23 H 0.076 0.924 24 H 0.000 1.000 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.099 0.901 28 H 0.114 0.886 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.126 0.874 41 H 0.053 0.947 42 H 0.105 0.895 43 H 0.037 0.963 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 22.831 -12.962 4.860 26.700 hybrid contribution -0.331 0.958 -0.121 1.020 sum 22.501 -12.004 4.739 25.939 Atomic orbital electron populations 1.70043 1.08061 1.28155 1.52511 1.25837 0.95622 1.03109 0.94292 0.85706 0.79171 0.78645 0.79363 1.18687 1.20549 1.17989 1.21236 0.90936 0.93321 1.50008 0.94347 1.19910 0.94379 0.86362 0.94789 1.62044 1.13110 1.17029 1.34668 1.22219 0.87512 0.97362 1.00459 1.22138 1.00798 0.92963 0.90113 1.62096 1.13356 1.16537 1.34746 1.22198 0.94885 0.88549 1.01604 1.22569 0.95243 0.98456 0.84268 1.87978 1.24279 1.86349 1.32912 1.22046 0.82592 0.99835 0.93959 1.22141 0.96699 1.02450 0.97359 1.23125 1.04330 0.91156 1.03719 1.23068 0.94096 1.00122 1.02168 1.22048 0.87544 0.95078 1.00920 1.21926 0.99715 0.94279 0.89814 0.92357 0.99980 0.95208 0.95709 0.90087 0.88619 0.94283 0.91601 0.90054 0.90918 0.93051 0.91862 0.93202 0.88378 0.88574 0.88847 0.87556 0.87395 0.94668 0.89474 0.96265 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.14 13.96 21.45 0.30 -59.84 16 2 C 0.01 0.52 5.47 84.66 0.46 0.99 16 3 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 4 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.60 6.54 99.48 0.65 -10.95 16 7 C -0.52 -30.80 9.03 25.60 0.23 -30.56 16 8 H 0.04 2.54 7.37 -2.91 -0.02 2.52 16 9 C 0.17 8.69 3.79 85.56 0.32 9.02 16 10 N -0.54 -23.84 4.70 -900.28 -4.23 -28.07 16 11 C 0.05 1.84 5.61 86.31 0.48 2.33 16 12 C 0.07 1.90 5.43 86.31 0.47 2.37 16 13 N -0.54 -15.55 4.59 -895.68 -4.11 -19.66 16 14 C 0.06 1.18 5.39 86.31 0.46 1.64 16 15 C 0.07 1.33 6.13 71.98 0.44 1.77 16 16 O -0.40 -9.40 10.29 -148.98 -1.53 -10.94 16 17 C 0.09 1.67 6.22 71.98 0.45 2.11 16 18 C -0.17 -3.07 6.05 -10.79 -0.07 -3.14 16 19 C -0.19 -3.11 10.18 30.62 0.31 -2.80 16 20 C -0.16 -2.07 10.25 30.62 0.31 -1.75 16 21 C 0.07 2.35 5.57 86.31 0.48 2.83 16 22 C 0.07 2.96 5.43 86.31 0.47 3.43 16 23 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 24 H -0.02 -0.89 7.18 -2.38 -0.02 -0.91 16 25 H 0.03 1.46 7.45 -2.38 -0.02 1.44 16 26 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.08 2.63 8.07 -2.39 -0.02 2.61 16 28 H 0.10 2.18 6.71 -2.39 -0.02 2.16 16 29 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.22 8.00 -2.39 -0.02 1.20 16 31 H 0.08 1.73 7.84 -2.39 -0.02 1.71 16 32 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.05 0.91 6.74 -2.39 -0.02 0.90 16 34 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.05 0.85 7.88 -2.39 -0.02 0.83 16 36 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.10 1.55 8.03 -2.39 -0.02 1.53 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.11 1.10 8.14 -2.38 -0.02 1.09 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.09 2.55 8.00 -2.39 -0.02 2.53 16 43 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.06 2.79 6.79 -2.39 -0.02 2.78 16 Total: -1.00 -69.75 346.10 -1.98 -71.73 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 0.88 Total: 11.55 kcal Atomic # 6 Polarization: -16.60 SS G_CDS: 4.83 Total: -11.76 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -8.04 Total: -107.56 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: -1.53 Total: -10.94 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -69.75 -1.98 -71.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175694.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.075 kcal (2) G-P(sol) polarization free energy of solvation -69.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds