Wall clock time and date at job start Mon Mar 30 2020 01:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99863 * 2 1 4 4 H 1.48501 * 109.47235 * 269.99947 * 3 2 1 5 5 H 1.48502 * 109.46908 * 29.99796 * 3 2 1 6 6 H 1.48501 * 109.47056 * 149.99634 * 3 2 1 7 7 C 1.37874 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00301 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99982 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47255 * 176.03353 * 9 7 2 11 11 C 1.46951 * 111.00182 * 296.82688 * 10 9 7 12 12 C 1.53052 * 109.36785 * 183.18560 * 11 10 9 13 13 N 1.46957 * 109.36600 * 301.60142 * 12 11 10 14 14 C 1.46895 * 111.00234 * 183.18216 * 13 12 11 15 15 C 1.52997 * 109.47066 * 163.70995 * 14 13 12 16 16 H 1.08994 * 109.52342 * 56.57296 * 15 14 13 17 17 C 1.53166 * 109.52457 * 296.37702 * 15 14 13 18 18 C 1.53175 * 109.03784 * 183.11192 * 17 15 14 19 19 C 1.53098 * 109.16028 * 56.98417 * 18 17 15 20 20 O 1.42896 * 109.41509 * 302.39025 * 19 18 17 21 21 C 1.42904 * 114.09574 * 61.15714 * 20 19 18 22 22 C 1.46961 * 110.87775 * 59.31909 * 13 12 11 23 23 C 1.46963 * 110.99910 * 60.63065 * 10 9 7 24 24 H 0.96994 * 119.99863 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47148 * 56.03019 * 9 7 2 26 26 H 1.09000 * 109.46895 * 296.03593 * 9 7 2 27 27 H 1.09000 * 109.48911 * 63.21938 * 11 10 9 28 28 H 1.09004 * 109.50778 * 303.16953 * 11 10 9 29 29 H 1.08997 * 109.49244 * 181.63080 * 12 11 10 30 30 H 1.09003 * 109.50122 * 61.57630 * 12 11 10 31 31 H 1.09005 * 109.46532 * 43.71242 * 14 13 12 32 32 H 1.09004 * 109.47231 * 283.71631 * 14 13 12 33 33 H 1.09003 * 109.54754 * 302.98453 * 17 15 14 34 34 H 1.09000 * 109.54218 * 63.16116 * 17 15 14 35 35 H 1.08994 * 109.52626 * 297.07999 * 18 17 15 36 36 H 1.09005 * 109.52633 * 176.88935 * 18 17 15 37 37 H 1.09004 * 109.47788 * 182.40564 * 19 18 17 38 38 H 1.08998 * 109.48111 * 62.37552 * 19 18 17 39 39 H 1.09002 * 109.48175 * 58.82857 * 21 20 19 40 40 H 1.09006 * 109.48182 * 178.84779 * 21 20 19 41 41 H 1.09000 * 109.49308 * 60.64841 * 22 13 12 42 42 H 1.08994 * 109.48768 * 180.71568 * 22 13 12 43 43 H 1.09003 * 109.48639 * 296.77517 * 23 10 9 44 44 H 1.08997 * 109.49126 * 56.81951 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2029 -3.6140 -0.0946 11 6 2.9414 -3.5691 -1.3643 12 6 3.8624 -4.7878 -1.4592 13 7 4.7858 -4.7910 -0.3160 14 6 5.7375 -5.9059 -0.4111 15 6 6.9114 -5.6567 0.5380 16 1 6.5369 -5.5199 1.5524 17 6 7.6687 -4.4007 0.0967 18 6 8.8856 -4.2055 1.0063 19 6 9.7604 -5.4608 0.9514 20 8 8.9870 -6.5963 1.3439 21 6 7.8624 -6.8559 0.5012 22 6 4.0472 -4.8361 0.9537 23 6 3.1263 -3.6173 1.0487 24 1 -0.4850 0.8400 -0.0004 25 1 0.5725 -2.5269 -0.8520 26 1 0.6785 -2.5881 0.9237 27 1 3.5385 -2.6581 -1.4057 28 1 2.2368 -3.5801 -2.1959 29 1 4.4325 -4.7415 -2.3870 30 1 3.2635 -5.6985 -1.4454 31 1 6.1069 -5.9820 -1.4338 32 1 5.2380 -6.8347 -0.1352 33 1 7.9998 -4.5181 -0.9352 34 1 7.0125 -3.5337 0.1725 35 1 8.5519 -4.0387 2.0304 36 1 9.4613 -3.3451 0.6650 37 1 10.6058 -5.3446 1.6297 38 1 10.1269 -5.6043 -0.0651 39 1 8.2040 -7.0177 -0.5212 40 1 7.3405 -7.7450 0.8551 41 1 3.4501 -5.7471 0.9951 42 1 4.7520 -4.8248 1.7850 43 1 3.7255 -2.7068 1.0347 44 1 2.5561 -3.6632 1.9765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:27 Heat of formation + Delta-G solvation = -48.485144 kcal Electronic energy + Delta-G solvation = -21542.494976 eV Core-core repulsion = 18494.096006 eV Total energy + Delta-G solvation = -3048.398970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.72375 -38.47756 -35.62855 -33.54690 -32.40063 -31.53547 -30.30581 -28.04817 -25.80775 -25.10031 -23.98601 -23.01454 -21.99546 -21.30425 -19.94421 -19.04661 -16.51521 -16.30893 -16.21869 -15.49743 -15.00193 -14.82103 -14.65086 -14.23393 -14.15694 -13.99422 -13.76689 -13.18064 -12.89517 -12.63722 -12.23987 -11.96932 -11.82678 -11.76424 -11.30416 -11.11599 -11.03360 -10.87099 -10.65651 -10.60353 -10.49399 -10.38043 -10.22489 -10.00911 -9.81952 -9.56902 -9.45665 -8.42015 -8.04019 -7.15169 -6.01402 -4.10295 3.28137 3.35020 3.38521 3.70657 4.10124 4.41902 4.66086 4.72438 4.86443 4.95514 5.05995 5.08623 5.24602 5.27320 5.28963 5.40371 5.45388 5.50158 5.60361 5.65205 5.68321 5.82484 5.83709 5.94101 5.95317 6.01233 6.01787 6.16858 6.28368 6.35172 6.39458 6.63489 6.79583 6.88235 7.02842 7.23180 7.34986 7.42316 7.53632 7.91502 8.07395 8.29496 8.32213 9.00508 9.56593 11.03685 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.004410 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.045517 B = 6347.090828 C = 7073.518626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.187 3.813 10 N -0.544 5.544 11 C 0.065 3.935 12 C 0.060 3.940 13 N -0.533 5.533 14 C 0.062 3.938 15 C -0.117 4.117 16 H 0.080 0.920 17 C -0.107 4.107 18 C -0.158 4.158 19 C 0.060 3.940 20 O -0.384 6.384 21 C 0.066 3.934 22 C 0.058 3.942 23 C 0.064 3.936 24 H 0.262 0.738 25 H 0.032 0.968 26 H 0.028 0.972 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.033 0.967 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.648 -12.062 -0.440 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.061 3.939 10 N -0.268 5.268 11 C -0.064 4.064 12 C -0.068 4.068 13 N -0.258 5.258 14 C -0.066 4.066 15 C -0.136 4.136 16 H 0.098 0.902 17 C -0.144 4.144 18 C -0.196 4.196 19 C -0.016 4.016 20 O -0.303 6.303 21 C -0.011 4.011 22 C -0.070 4.070 23 C -0.065 4.065 24 H 0.071 0.929 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.051 0.949 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 15.512 -12.058 -0.281 19.649 hybrid contribution 0.295 1.283 -0.259 1.341 sum 15.806 -10.775 -0.540 19.137 Atomic orbital electron populations 1.69946 1.06028 1.26786 1.50351 1.24961 0.94739 0.99128 0.94963 0.86650 0.79937 0.83648 0.78124 1.20666 1.21184 1.19936 1.21770 0.93432 0.92018 1.51404 0.92307 1.19728 0.90833 0.85551 0.97757 1.62679 1.16784 1.46600 1.00769 1.21904 0.95165 0.95855 0.93439 1.22224 0.93438 0.98557 0.92579 1.62074 1.17924 1.42813 1.03002 1.22003 0.93108 0.92263 0.99264 1.21781 0.95290 0.95804 1.00728 0.90206 1.21497 0.96010 0.98789 0.98146 1.22226 0.97848 0.98088 1.01412 1.22583 0.93571 0.85622 0.99874 1.87915 1.40668 1.47464 1.54248 1.22586 0.86793 0.97390 0.94332 1.22263 0.95193 0.98429 0.91079 1.21922 0.93756 0.95963 0.94824 0.92854 0.94945 0.95425 0.93409 0.91478 0.91439 0.94895 0.91208 0.94901 0.92440 0.89830 0.91163 0.91093 0.89269 0.93444 0.93329 0.89165 0.94897 0.91318 0.93387 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.33 13.29 55.43 0.74 -25.60 16 2 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.55 -15.06 7.67 -34.44 -0.26 -15.33 16 8 H 0.06 1.62 5.81 -52.49 -0.31 1.32 16 9 C 0.19 4.84 5.13 -4.98 -0.03 4.82 16 10 N -0.54 -11.76 4.92 -235.91 -1.16 -12.92 16 11 C 0.07 1.28 5.30 -3.77 -0.02 1.26 16 12 C 0.06 0.94 5.58 -3.77 -0.02 0.92 16 13 N -0.53 -7.95 4.12 -234.46 -0.97 -8.92 16 14 C 0.06 0.73 4.39 -3.83 -0.02 0.72 16 15 C -0.12 -1.30 2.39 -90.49 -0.22 -1.52 16 16 H 0.08 0.99 6.61 -51.93 -0.34 0.65 16 17 C -0.11 -1.21 5.14 -26.55 -0.14 -1.35 16 18 C -0.16 -1.58 6.14 -26.59 -0.16 -1.74 16 19 C 0.06 0.57 6.84 37.21 0.25 0.82 16 20 O -0.38 -4.42 10.77 -35.23 -0.38 -4.80 16 21 C 0.07 0.66 6.13 37.21 0.23 0.89 16 22 C 0.06 0.93 5.44 -3.76 -0.02 0.91 16 23 C 0.06 1.27 5.26 -3.76 -0.02 1.25 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 1.04 6.85 -51.93 -0.36 0.69 16 28 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.07 0.94 8.02 -51.93 -0.42 0.52 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.77 7.91 -51.93 -0.41 0.36 16 32 H 0.03 0.38 8.05 -51.93 -0.42 -0.04 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.14 7.81 -51.93 -0.41 0.73 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.99 6.56 -51.93 -0.34 0.65 16 43 H 0.05 1.05 6.54 -51.93 -0.34 0.71 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -29.30 333.13 -10.25 -39.56 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.97 Total: -2.22 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -0.52 Total: -6.64 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -1.39 Total: -47.44 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.38 Total: -4.80 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.30 -10.25 -39.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.928 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds