Wall clock time and date at job start Mon Mar 30 2020 01:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99863 * 2 1 4 4 H 1.48501 * 109.47235 * 269.99947 * 3 2 1 5 5 H 1.48502 * 109.46908 * 29.99796 * 3 2 1 6 6 H 1.48501 * 109.47056 * 149.99634 * 3 2 1 7 7 C 1.37874 * 120.00281 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00301 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99982 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47255 * 176.03353 * 9 7 2 11 11 C 1.46951 * 111.00182 * 296.82688 * 10 9 7 12 12 C 1.53052 * 109.36785 * 183.18560 * 11 10 9 13 13 N 1.46957 * 109.36600 * 301.60142 * 12 11 10 14 14 C 1.46895 * 111.00234 * 183.18216 * 13 12 11 15 15 C 1.52997 * 109.47066 * 163.70995 * 14 13 12 16 16 H 1.08994 * 109.52342 * 56.57296 * 15 14 13 17 17 C 1.53166 * 109.52457 * 296.37702 * 15 14 13 18 18 C 1.53175 * 109.03784 * 183.11192 * 17 15 14 19 19 C 1.53098 * 109.16028 * 56.98417 * 18 17 15 20 20 O 1.42896 * 109.41509 * 302.39025 * 19 18 17 21 21 C 1.42904 * 114.09574 * 61.15714 * 20 19 18 22 22 C 1.46961 * 110.87775 * 59.31909 * 13 12 11 23 23 C 1.46963 * 110.99910 * 60.63065 * 10 9 7 24 24 H 0.96994 * 119.99863 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47148 * 56.03019 * 9 7 2 26 26 H 1.09000 * 109.46895 * 296.03593 * 9 7 2 27 27 H 1.09000 * 109.48911 * 63.21938 * 11 10 9 28 28 H 1.09004 * 109.50778 * 303.16953 * 11 10 9 29 29 H 1.08997 * 109.49244 * 181.63080 * 12 11 10 30 30 H 1.09003 * 109.50122 * 61.57630 * 12 11 10 31 31 H 1.09005 * 109.46532 * 43.71242 * 14 13 12 32 32 H 1.09004 * 109.47231 * 283.71631 * 14 13 12 33 33 H 1.09003 * 109.54754 * 302.98453 * 17 15 14 34 34 H 1.09000 * 109.54218 * 63.16116 * 17 15 14 35 35 H 1.08994 * 109.52626 * 297.07999 * 18 17 15 36 36 H 1.09005 * 109.52633 * 176.88935 * 18 17 15 37 37 H 1.09004 * 109.47788 * 182.40564 * 19 18 17 38 38 H 1.08998 * 109.48111 * 62.37552 * 19 18 17 39 39 H 1.09002 * 109.48175 * 58.82857 * 21 20 19 40 40 H 1.09006 * 109.48182 * 178.84779 * 21 20 19 41 41 H 1.09000 * 109.49308 * 60.64841 * 22 13 12 42 42 H 1.08994 * 109.48768 * 180.71568 * 22 13 12 43 43 H 1.09003 * 109.48639 * 296.77517 * 23 10 9 44 44 H 1.08997 * 109.49126 * 56.81951 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2029 -3.6140 -0.0946 11 6 2.9414 -3.5691 -1.3643 12 6 3.8624 -4.7878 -1.4592 13 7 4.7858 -4.7910 -0.3160 14 6 5.7375 -5.9059 -0.4111 15 6 6.9114 -5.6567 0.5380 16 1 6.5369 -5.5199 1.5524 17 6 7.6687 -4.4007 0.0967 18 6 8.8856 -4.2055 1.0063 19 6 9.7604 -5.4608 0.9514 20 8 8.9870 -6.5963 1.3439 21 6 7.8624 -6.8559 0.5012 22 6 4.0472 -4.8361 0.9537 23 6 3.1263 -3.6173 1.0487 24 1 -0.4850 0.8400 -0.0004 25 1 0.5725 -2.5269 -0.8520 26 1 0.6785 -2.5881 0.9237 27 1 3.5385 -2.6581 -1.4057 28 1 2.2368 -3.5801 -2.1959 29 1 4.4325 -4.7415 -2.3870 30 1 3.2635 -5.6985 -1.4454 31 1 6.1069 -5.9820 -1.4338 32 1 5.2380 -6.8347 -0.1352 33 1 7.9998 -4.5181 -0.9352 34 1 7.0125 -3.5337 0.1725 35 1 8.5519 -4.0387 2.0304 36 1 9.4613 -3.3451 0.6650 37 1 10.6058 -5.3446 1.6297 38 1 10.1269 -5.6043 -0.0651 39 1 8.2040 -7.0177 -0.5212 40 1 7.3405 -7.7450 0.8551 41 1 3.4501 -5.7471 0.9951 42 1 4.7520 -4.8248 1.7850 43 1 3.7255 -2.7068 1.0347 44 1 2.5561 -3.6632 1.9765 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611175997.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:27 Heat of formation + Delta-G solvation = -68.651202 kcal Electronic energy + Delta-G solvation = -21543.369442 eV Core-core repulsion = 18494.096006 eV Total energy + Delta-G solvation = -3049.273436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.70142 -39.75850 -37.04827 -34.91804 -34.04529 -32.55965 -31.75709 -29.68198 -27.37554 -26.03214 -25.29425 -24.47763 -23.47022 -22.51216 -20.89238 -20.57216 -18.47051 -17.42958 -17.08664 -16.83942 -16.30246 -16.08701 -15.79166 -15.75943 -15.46896 -15.32447 -14.95526 -14.56076 -14.48865 -13.64449 -13.50369 -13.48115 -13.20740 -13.04942 -12.83156 -12.67607 -12.37288 -12.21206 -12.12620 -12.05398 -11.95591 -11.80456 -11.55299 -11.44907 -11.33418 -11.05345 -10.61911 -10.34631 -9.24555 -9.00968 -8.16595 -6.36144 1.35453 1.35877 1.46852 2.36246 2.86880 3.06731 3.08092 3.37952 3.78905 3.91797 3.99641 4.07316 4.14611 4.25918 4.27413 4.38781 4.48155 4.49086 4.53549 4.59485 4.64048 4.72863 4.77581 4.78647 4.85694 4.89134 5.02666 5.08090 5.10190 5.15048 5.19874 5.24112 5.25772 5.32070 5.43984 5.47511 5.72405 6.02322 6.11767 6.14231 6.27752 6.34310 6.52103 6.84626 7.35337 8.85947 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.024469 B = 0.004410 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.045517 B = 6347.090828 C = 7073.518626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.200 3.800 10 N -0.543 5.543 11 C 0.066 3.934 12 C 0.072 3.928 13 N -0.544 5.544 14 C 0.066 3.934 15 C -0.111 4.111 16 H 0.064 0.936 17 C -0.105 4.105 18 C -0.156 4.156 19 C 0.059 3.941 20 O -0.403 6.403 21 C 0.068 3.932 22 C 0.072 3.928 23 C 0.066 3.934 24 H 0.265 0.735 25 H 0.006 0.994 26 H 0.002 0.998 27 H 0.022 0.978 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.040 0.960 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.038 0.962 42 H 0.085 0.915 43 H 0.022 0.978 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.928 -12.998 -0.987 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.187 4.187 3 Si 0.782 3.218 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.195 1.195 7 C -0.593 4.593 8 H 0.073 0.927 9 C 0.073 3.927 10 N -0.267 5.267 11 C -0.063 4.063 12 C -0.056 4.056 13 N -0.269 5.269 14 C -0.061 4.061 15 C -0.130 4.130 16 H 0.083 0.917 17 C -0.143 4.143 18 C -0.193 4.193 19 C -0.018 4.018 20 O -0.322 6.322 21 C -0.009 4.009 22 C -0.056 4.056 23 C -0.063 4.063 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.020 0.980 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.058 0.942 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.118 0.882 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.040 0.960 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 17.813 -13.014 -0.830 22.076 hybrid contribution -0.417 1.554 -0.087 1.611 sum 17.396 -11.460 -0.917 20.851 Atomic orbital electron populations 1.70063 1.07551 1.27883 1.51174 1.25802 0.95589 1.02795 0.94507 0.85573 0.78616 0.79162 0.78451 1.19806 1.20505 1.19462 1.21949 0.93278 0.92917 1.51128 0.92715 1.19388 0.91232 0.86867 0.95193 1.62620 1.17321 1.44234 1.02530 1.21937 0.95235 0.97025 0.92080 1.22095 0.93177 0.96350 0.94016 1.62033 1.17869 1.44931 1.02091 1.22048 0.92360 0.91284 1.00456 1.21716 0.95320 0.96396 0.99613 0.91725 1.21445 0.96063 0.97802 0.98962 1.22203 0.97637 0.99101 1.00396 1.22703 0.93487 0.84527 1.01041 1.87898 1.41130 1.48127 1.55056 1.22631 0.86265 0.96915 0.95078 1.22079 0.94835 0.96226 0.92469 1.21929 0.93551 0.96978 0.93795 0.92577 0.97537 0.97988 0.95980 0.91977 0.88899 0.94211 0.89589 0.93832 0.91618 0.92554 0.92388 0.90079 0.87967 0.92137 0.91855 0.88176 0.94344 0.89718 0.95988 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 2 C 0.01 0.71 5.46 84.65 0.46 1.17 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.55 -31.36 7.67 25.60 0.20 -31.16 16 8 H 0.05 3.10 5.81 -2.91 -0.02 3.08 16 9 C 0.20 10.81 5.13 85.56 0.44 11.25 16 10 N -0.54 -24.04 4.92 -900.27 -4.43 -28.47 16 11 C 0.07 2.60 5.30 86.31 0.46 3.06 16 12 C 0.07 2.11 5.58 86.31 0.48 2.59 16 13 N -0.54 -15.24 4.12 -895.71 -3.69 -18.93 16 14 C 0.07 1.36 4.39 86.30 0.38 1.74 16 15 C -0.11 -2.22 2.39 -10.71 -0.03 -2.24 16 16 H 0.06 1.49 6.61 -2.39 -0.02 1.48 16 17 C -0.11 -2.20 5.14 30.71 0.16 -2.04 16 18 C -0.16 -2.85 6.14 30.69 0.19 -2.66 16 19 C 0.06 0.96 6.84 72.01 0.49 1.45 16 20 O -0.40 -8.27 10.77 -148.98 -1.60 -9.88 16 21 C 0.07 1.16 6.13 72.01 0.44 1.60 16 22 C 0.07 2.20 5.44 86.31 0.47 2.67 16 23 C 0.07 2.65 5.26 86.31 0.45 3.11 16 24 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 25 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 26 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 27 H 0.02 0.98 6.85 -2.39 -0.02 0.96 16 28 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.09 2.30 8.02 -2.39 -0.02 2.28 16 30 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.54 7.91 -2.38 -0.02 1.52 16 32 H 0.04 0.84 8.05 -2.38 -0.02 0.82 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 34 H 0.06 1.49 7.81 -2.39 -0.02 1.47 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.08 2.34 6.56 -2.39 -0.02 2.32 16 43 H 0.02 0.99 6.54 -2.39 -0.02 0.97 16 44 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -64.02 333.13 -1.88 -65.90 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: 0.94 Total: 9.78 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 4.59 Total: -9.47 kcal Atomic # 7 Polarization: -95.14 SS G_CDS: -7.83 Total: -102.97 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: -1.60 Total: -9.88 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -64.02 -1.88 -65.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175997.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.755 kcal (2) G-P(sol) polarization free energy of solvation -64.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds