Wall clock time and date at job start Mon Mar 30 2020 01:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 180.02562 * 9 7 2 11 11 C 1.46960 * 110.99996 * 293.79758 * 10 9 7 12 12 C 1.53050 * 109.36394 * 176.81475 * 11 10 9 13 13 N 1.46958 * 109.36635 * 58.40200 * 12 11 10 14 14 C 1.46895 * 110.99921 * 176.81289 * 13 12 11 15 15 C 1.53004 * 109.47179 * 293.79767 * 14 13 12 16 16 H 1.08990 * 109.47822 * 60.02858 * 15 14 13 17 17 C 1.53097 * 109.47855 * 180.02562 * 15 14 13 18 18 C 1.53181 * 109.15813 * 177.59070 * 17 15 14 19 19 C 1.53176 * 109.03659 * 303.01732 * 18 17 15 20 20 C 1.53098 * 109.16282 * 56.98486 * 19 18 17 21 21 O 1.42896 * 109.47875 * 300.00136 * 15 14 13 22 22 C 1.46960 * 110.87909 * 300.67915 * 13 12 11 23 23 C 1.46958 * 110.99921 * 170.00034 * 10 9 7 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 26 26 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 27 27 H 1.09000 * 109.48987 * 296.77749 * 11 10 9 28 28 H 1.09001 * 109.49037 * 56.84581 * 11 10 9 29 29 H 1.08999 * 109.48818 * 298.43647 * 12 11 10 30 30 H 1.09000 * 109.48942 * 178.37184 * 12 11 10 31 31 H 1.08997 * 109.47602 * 53.79888 * 14 13 12 32 32 H 1.09003 * 109.46969 * 173.79868 * 14 13 12 33 33 H 1.08993 * 109.52147 * 297.49847 * 17 15 14 34 34 H 1.08996 * 109.51981 * 57.69001 * 17 15 14 35 35 H 1.08996 * 109.54057 * 183.15264 * 18 17 15 36 36 H 1.08995 * 109.54148 * 62.88803 * 18 17 15 37 37 H 1.08991 * 109.52617 * 297.07385 * 19 18 17 38 38 H 1.09004 * 109.52041 * 176.88698 * 19 18 17 39 39 H 1.08997 * 109.47895 * 182.40718 * 20 19 18 40 40 H 1.09001 * 109.48728 * 62.37272 * 20 19 18 41 41 H 1.09000 * 109.48987 * 299.35669 * 22 13 12 42 42 H 1.09001 * 109.49037 * 179.28836 * 22 13 12 43 43 H 1.09000 * 109.48990 * 303.15665 * 23 10 9 44 44 H 1.08999 * 109.48701 * 63.22086 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0018 11 6 2.9697 -3.6567 -1.2530 12 6 4.0052 -4.7814 -1.1800 13 7 3.3203 -6.0596 -0.9418 14 6 4.2749 -7.1761 -0.9405 15 6 4.8689 -7.3408 -2.3409 16 1 5.3835 -6.4238 -2.6275 17 6 5.8634 -8.5048 -2.3399 18 6 6.4082 -8.7017 -3.7580 19 6 5.2361 -8.9393 -4.7150 20 6 4.2659 -7.7585 -4.6242 21 8 3.8211 -7.6111 -3.2742 22 6 2.5563 -6.0186 0.3130 23 6 1.5208 -4.8939 0.2400 24 1 -0.4850 -0.8401 -0.0004 25 1 0.6241 -2.5566 0.8903 26 1 0.6247 -2.5571 -0.8897 27 1 2.2912 -3.8406 -2.0860 28 1 3.4777 -2.7037 -1.4008 29 1 4.7001 -4.5836 -0.3639 30 1 4.5535 -4.8325 -2.1207 31 1 5.0742 -6.9700 -0.2287 32 1 3.7607 -8.0935 -0.6538 33 1 6.6863 -8.2802 -1.6614 34 1 5.3591 -9.4144 -2.0140 35 1 7.0744 -9.5642 -3.7761 36 1 6.9552 -7.8104 -4.0654 37 1 4.7193 -9.8577 -4.4371 38 1 5.6105 -9.0254 -5.7351 39 1 3.4083 -7.9421 -5.2715 40 1 4.7721 -6.8467 -4.9412 41 1 3.2348 -5.8347 1.1460 42 1 2.0483 -6.9716 0.4608 43 1 0.9725 -4.8428 1.1807 44 1 0.8259 -5.0917 -0.5761 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611176150.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:03 Heat of formation + Delta-G solvation = -48.493876 kcal Electronic energy + Delta-G solvation = -21388.569620 eV Core-core repulsion = 18340.170272 eV Total energy + Delta-G solvation = -3048.399348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.73181 -38.42905 -35.28884 -33.73460 -32.86529 -31.58576 -30.42247 -28.24469 -26.14967 -24.59325 -23.70209 -23.24965 -21.86340 -21.28004 -20.35716 -19.19880 -16.74726 -16.40003 -16.13189 -15.89154 -14.88123 -14.71417 -14.51418 -14.31113 -14.05330 -13.95730 -13.69099 -13.35205 -13.14015 -12.82083 -12.37861 -12.11095 -11.98442 -11.54414 -11.40156 -11.30344 -11.16786 -11.04013 -10.81835 -10.75260 -10.60325 -10.43880 -10.26069 -10.08544 -9.84741 -9.45356 -8.63448 -8.33531 -8.04774 -7.26593 -6.33506 -4.01964 3.46014 3.49623 3.65461 3.70928 4.01180 4.54752 4.55984 4.62263 4.63999 4.82528 4.88449 5.00059 5.12432 5.23179 5.28953 5.42339 5.43622 5.47101 5.51582 5.56127 5.57911 5.67262 5.69094 5.76131 5.82169 5.85348 5.90108 5.91975 6.04722 6.07926 6.20608 6.41619 6.57901 6.67823 7.03178 7.13503 7.18451 7.33208 7.37681 7.85154 8.05059 8.37085 8.62489 8.91024 9.68955 11.05813 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.030760 B = 0.003791 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.064358 B = 7383.446456 C = 7715.948521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 1.075 2.925 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.285 1.285 7 C -0.587 4.587 8 H 0.056 0.944 9 C 0.183 3.817 10 N -0.532 5.532 11 C 0.070 3.930 12 C 0.058 3.942 13 N -0.529 5.529 14 C 0.064 3.936 15 C 0.095 3.905 16 H 0.057 0.943 17 C -0.151 4.151 18 C -0.121 4.121 19 C -0.157 4.157 20 C 0.058 3.942 21 O -0.357 6.357 22 C 0.063 3.937 23 C 0.055 3.945 24 H 0.267 0.733 25 H 0.019 0.981 26 H -0.019 1.019 27 H 0.028 0.972 28 H 0.086 0.914 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.037 0.963 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.941 -18.391 -6.409 22.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.190 4.190 3 Si 0.904 3.096 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.211 1.211 7 C -0.626 4.626 8 H 0.075 0.925 9 C 0.057 3.943 10 N -0.257 5.257 11 C -0.059 4.059 12 C -0.070 4.070 13 N -0.254 5.254 14 C -0.065 4.065 15 C 0.037 3.963 16 H 0.075 0.925 17 C -0.189 4.189 18 C -0.159 4.159 19 C -0.194 4.194 20 C -0.019 4.019 21 O -0.275 6.275 22 C -0.065 4.065 23 C -0.074 4.074 24 H 0.077 0.923 25 H 0.037 0.963 26 H -0.001 1.001 27 H 0.047 0.953 28 H 0.104 0.896 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 11.540 -16.747 -6.345 21.304 hybrid contribution 0.475 -1.754 -0.102 1.820 sum 12.015 -18.500 -6.447 22.982 Atomic orbital electron populations 1.70759 1.06895 1.30441 1.47124 1.25849 0.96511 1.02694 0.93986 0.83454 0.74547 0.74901 0.76725 1.21471 1.21496 1.21100 1.21993 0.94752 0.90987 1.54835 0.92542 1.19805 0.90718 0.88964 0.94784 1.62197 1.27581 1.02411 1.33546 1.21964 0.95459 0.97445 0.91026 1.22270 0.96079 0.88815 0.99869 1.62094 1.25616 1.02925 1.34751 1.22083 0.94883 0.95532 0.93961 1.22112 0.88206 0.96038 0.89971 0.92468 1.22198 0.99367 0.99890 0.97439 1.21566 0.97544 1.01914 0.94859 1.22206 0.97331 1.00031 0.99859 1.22543 0.98190 0.96445 0.84716 1.88088 1.31926 1.91808 1.15703 1.22132 0.96049 0.98472 0.89870 1.22082 0.94933 0.90036 1.00317 0.92274 0.96277 1.00127 0.95332 0.89610 0.94557 0.91273 0.93693 0.90357 0.91025 0.91008 0.91626 0.91869 0.91177 0.91180 0.89069 0.93491 0.94482 0.91140 0.91179 0.95103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.40 13.65 55.43 0.76 -27.64 16 2 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 3 Si 1.08 25.70 29.90 -169.99 -5.08 20.62 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.59 -17.00 8.47 -34.44 -0.29 -17.29 16 8 H 0.06 1.63 7.13 -52.48 -0.37 1.26 16 9 C 0.18 4.91 4.03 -4.98 -0.02 4.89 16 10 N -0.53 -12.12 4.70 -235.90 -1.11 -13.23 16 11 C 0.07 1.45 5.43 -3.77 -0.02 1.43 16 12 C 0.06 0.97 5.41 -3.77 -0.02 0.95 16 13 N -0.53 -8.40 4.58 -234.47 -1.07 -9.47 16 14 C 0.06 0.80 4.65 -3.83 -0.02 0.78 16 15 C 0.10 1.11 2.52 -26.68 -0.07 1.04 16 16 H 0.06 0.69 6.49 -51.93 -0.34 0.35 16 17 C -0.15 -1.35 5.42 -26.59 -0.14 -1.50 16 18 C -0.12 -0.97 6.03 -26.55 -0.16 -1.13 16 19 C -0.16 -1.29 6.14 -26.59 -0.16 -1.45 16 20 C 0.06 0.60 6.84 37.21 0.25 0.85 16 21 O -0.36 -4.80 10.27 -35.23 -0.36 -5.16 16 22 C 0.06 1.01 5.61 -3.77 -0.02 0.99 16 23 C 0.06 1.07 5.61 -3.77 -0.02 1.05 16 24 H 0.27 8.28 7.22 -40.82 -0.29 7.99 16 25 H 0.02 0.54 7.89 -51.93 -0.41 0.13 16 26 H -0.02 -0.54 7.99 -51.93 -0.41 -0.95 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 1.91 6.79 -51.93 -0.35 1.55 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.06 6.34 -51.93 -0.33 0.73 16 31 H 0.05 0.52 8.12 -51.93 -0.42 0.10 16 32 H 0.08 0.94 8.03 -51.93 -0.42 0.52 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 43 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 335.88 15.07 5.06 5.06 Total: -1.00 -31.94 335.88 -10.66 -42.59 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -8.06 Total: -3.68 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: -0.79 Total: -9.09 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -1.43 Total: -50.35 kcal Atomic # 8 Polarization: -4.80 SS G_CDS: -0.36 Total: -5.16 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.94 -10.66 -42.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611176150.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.900 kcal (2) G-P(sol) polarization free energy of solvation -31.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds